peak-motifs UP_peak-motifs

Motif discovery

Motif 1 oligos_6nt_mkv4_m1

k-mer sig=9.79; evalue=1.6e-10

cmAACCCTAgm

KCTAGGGTTKG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 230 (17.44%)
Max nb of predicted sites per peak: 4
(HORVU.MOREX.r3.6HG0614650)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv4_m2

k-mer sig=4.87; evalue=1.3e-05

ahCCAAACmv

BKGTTTGGDT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 606 (45.94%)
Max nb of predicted sites per peak: 8
(HORVU.MOREX.r3.3HG0330630)
Mean nb of predicted sites per peak: 1.52

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv4_m3

k-mer sig=4.79; evalue=1.6e-05

tyCTTCTCyy

RRGAGAAGRA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 624 (47.31%)
Max nb of predicted sites per peak: 20
(HORVU.MOREX.r3.1HG0080860)
Mean nb of predicted sites per peak: 1.57

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv4_m4

k-mer sig=4.50; evalue=3.2e-05

whCAAATChw

WDGATTTGDW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 626 (47.46%)
Max nb of predicted sites per peak: 5
(HORVU.MOREX.r3.4HG0413950)
Mean nb of predicted sites per peak: 1.44

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv4_m5

k-mer sig=3.36; evalue=0.00044

kwAGAGCAws

SWTGCTCTWM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 568 (43.06%)
Max nb of predicted sites per peak: 5
(HORVU.MOREX.r3.4HG0382480)
Mean nb of predicted sites per peak: 1.35

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=2.27; evalue=0.0054

ymAAACGTyy

RRACGTTTKR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 357 (27.07%)
Max nb of predicted sites per peak: 7
(HORVU.MOREX.r3.2HG0153470)
Mean nb of predicted sites per peak: 1.39

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=0.40; evalue=0.4

waCTTGTAbw

WVTACAAGTW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 592 (44.88%)
Max nb of predicted sites per peak: 7
(HORVU.MOREX.r3.6HG0543960)
Mean nb of predicted sites per peak: 1.47

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=0.17; evalue=0.68

hsCCCTTAkw

WMTAAGGGSD

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 288 (21.83%)
Max nb of predicted sites per peak: 5
(HORVU.MOREX.r3.7HG0670730)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

k-mer sig=0.16; evalue=0.69

msGCGGCCgs

SCGGCCGCSK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 340 (25.78%)
Max nb of predicted sites per peak: 10
(HORVU.MOREX.r3.6HG0605830)
Mean nb of predicted sites per peak: 1.62

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

k-mer sig=0.14; evalue=0.72

bwCCTGGAss

SSTCCAGGWV

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 284 (21.53%)
Max nb of predicted sites per peak: 5
(HORVU.MOREX.r3.3HG0263750)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv5_m1

k-mer sig=3.84; evalue=0.00014

cyACTCCCTCcs

SGGAGGGAGTRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 495 (37.53%)
Max nb of predicted sites per peak: 11
(HORVU.MOREX.r3.5HG0519070)
Mean nb of predicted sites per peak: 1.54

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv5_m2

k-mer sig=2.59; evalue=0.0026

wwAATATAAdw

WHTTATATTWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 406 (30.78%)
Max nb of predicted sites per peak: 6
(HORVU.MOREX.r3.2HG0138380)
Mean nb of predicted sites per peak: 1.49

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv5_m3

k-mer sig=2.54; evalue=0.0029

yyCTTCCTCyy

RRGAGGAAGRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 491 (37.23%)
Max nb of predicted sites per peak: 42
(HORVU.MOREX.r3.1HG0080860)
Mean nb of predicted sites per peak: 1.88

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv5_m4

k-mer sig=1.87; evalue=0.013

yyCCTCTCCyy

RRGGAGAGGRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 315 (23.88%)
Max nb of predicted sites per peak: 8
(HORVU.MOREX.r3.1HG0090320)
Mean nb of predicted sites per peak: 1.38

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv5_m5

k-mer sig=1.83; evalue=0.015

wwTTTCAAAAww

WWTTTTGAAAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 284 (21.53%)
Max nb of predicted sites per peak: 11
(HORVU.MOREX.r3.4HG0340220)
Mean nb of predicted sites per peak: 2.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

k-mer sig=2.16; evalue=0.0069

wwGTATTTAkw

WMTAAATACWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 260 (19.71%)
Max nb of predicted sites per peak: 4
(HORVU.MOREX.r3.4HG0409120)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m2

k-mer sig=1.19; evalue=0.065

aaAAACGTTTtt

AAAAACGTTTTT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 116 (8.79%)
Max nb of predicted sites per peak: 10
(HORVU.MOREX.r3.1HG0077030)
Mean nb of predicted sites per peak: 2.59

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 positions_7nt_m3

k-mer sig=0.79; evalue=0.16

ssGTCGCCAcs

SGTGGCGACSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 268 (20.32%)
Max nb of predicted sites per peak: 6
(HORVU.MOREX.r3.4HG0383280)
Mean nb of predicted sites per peak: 1.38

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 positions_7nt_m4

k-mer sig=0.36; evalue=0.44

awAAAACTAka

TMTAGTTTTWT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 316 (23.96%)
Max nb of predicted sites per peak: 6
(HORVU.MOREX.r3.4HG0415110)
Mean nb of predicted sites per peak: 1.28

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: UP_peak-motifs (14/08/2025 16:43)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results