peak-motifs Down_peak-motifs

motif discovery

oligos_6nt_mkv4

oligos_6nt_mkv4_m1	assembly: aacccta (sig=6.45; e-value=3.5e-07)	RC: tagggtt
oligos_6nt_mkv4_m2	assembly: atcctat (sig=4.57; e-value=2.7e-05)	RC: ataggat
oligos_6nt_mkv4_m3	assembly: caaatc (sig=4.32; e-value=4.8e-05)	RC: gatttg
oligos_6nt_mkv4_m4	assembly: aacatt (sig=4.30; e-value=5e-05)	RC: aatgtt
oligos_6nt_mkv4_m5	assembly: caaaac (sig=3.52; e-value=0.0003)	RC: gttttg

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_6nt

positions_6nt_m1	assembly: catgcg (sig=1.18; e-value=0.066)	RC: cgcatg
positions_6nt_m2	: (sig=; e-value=1)	RC:
positions_6nt_m3	: (sig=; e-value=1)	RC:
positions_6nt_m4	: (sig=; e-value=1)	RC:
positions_6nt_m5	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

oligos_7nt_mkv5

oligos_7nt_mkv5_m1	assembly: caacatc (sig=3.30; e-value=0.0005)	RC: gatgttg
oligos_7nt_mkv5_m2	assembly: cttcctc (sig=3.13; e-value=0.00074)	RC: gaggaag
oligos_7nt_mkv5_m3	assembly: actccta (sig=2.75; e-value=0.0018)	RC: taggagt
oligos_7nt_mkv5_m4	assembly: accggga (sig=2.70; e-value=0.002)	RC: tcccggt
oligos_7nt_mkv5_m5	assembly: tactccctc (sig=2.41; e-value=0.0039)	RC: gagggagta

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_7nt

positions_7nt_m1	assembly: ttggccaa (sig=0.41; e-value=0.39)	RC: ttggccaa
positions_7nt_m2	assembly: actgatg (sig=0.39; e-value=0.41)	RC: catcagt
positions_7nt_m3	: (sig=; e-value=1)	RC:
positions_7nt_m4	: (sig=; e-value=1)	RC:
positions_7nt_m5	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

Motif discovery

Motif 1 oligos_6nt_mkv4_m1

k-mer sig=6.45; evalue=3.5e-07

cmAACCCTAgc

GCTAGGGTTKG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 209 (14.96%)
Max nb of predicted sites per peak: 6
(HORVU.MOREX.r3.3HG0240600)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv4_m2

k-mer sig=4.57; evalue=2.7e-05

wyATCCTATaw

WTATAGGATRW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 186 (13.31%)
Max nb of predicted sites per peak: 4
(HORVU.MOREX.r3.2HG0208680)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv4_m3

k-mer sig=4.32; evalue=4.8e-05

whCAAATChw

WDGATTTGDW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 638 (45.67%)
Max nb of predicted sites per peak: 6
(HORVU.MOREX.r3.7HG0743160)
Mean nb of predicted sites per peak: 1.44

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv4_m4

k-mer sig=4.30; evalue=5e-05

wmAACATTtt

AAAATGTTKW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 518 (37.08%)
Max nb of predicted sites per peak: 11
(HORVU.MOREX.r3.6HG0567400)
Mean nb of predicted sites per peak: 1.73

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv4_m5

k-mer sig=3.52; evalue=0.0003

wmCAAAACmw

WKGTTTTGKW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 685 (49.03%)
Max nb of predicted sites per peak: 6
(HORVU.MOREX.r3.7HG0717820)
Mean nb of predicted sites per peak: 1.52

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=1.18; evalue=0.066

yrCATGCGys

SRCGCATGYR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 379 (27.13%)
Max nb of predicted sites per peak: 6
(HORVU.MOREX.r3.4HG0340200)
Mean nb of predicted sites per peak: 1.28

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_mkv5_m1

k-mer sig=3.30; evalue=0.0005

ahCAACATCah

DTGATGTTGDT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 290 (20.76%)
Max nb of predicted sites per peak: 4
(HORVU.MOREX.r3.5HG0430620)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_mkv5_m2

k-mer sig=3.13; evalue=0.00074

yyCTTCCTCyy

RRGAGGAAGRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 460 (32.93%)
Max nb of predicted sites per peak: 14
(HORVU.MOREX.r3.1HG0075150)
Mean nb of predicted sites per peak: 1.57

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_mkv5_m3

k-mer sig=2.75; evalue=0.0018

cwACTCCTAst

ASTAGGAGTWG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 186 (13.31%)
Max nb of predicted sites per peak: 14
(HORVU.MOREX.r3.7HG0668320)
Mean nb of predicted sites per peak: 1.27

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_mkv5_m4

k-mer sig=2.70; evalue=0.002

ssACCGGGAss

SSTCCCGGTSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 135 (9.66%)
Max nb of predicted sites per peak: 10
(HORVU.MOREX.r3.7HG0661680)
Mean nb of predicted sites per peak: 1.55

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv5_m5

k-mer sig=2.41; evalue=0.0039

yctmCTCCCTCyc

GRGAGGGAGKAGR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 567 (40.59%)
Max nb of predicted sites per peak: 9
(HORVU.MOREX.r3.3HG0281780)
Mean nb of predicted sites per peak: 1.72

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 positions_7nt_m1

k-mer sig=0.41; evalue=0.39

wyTTGGCCAArw

WYTTGGCCAARW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 28 (2.00%)
Max nb of predicted sites per peak: 2
(Rpr1)
Mean nb of predicted sites per peak: 2.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 positions_7nt_m2

k-mer sig=0.39; evalue=0.41

mwACTGATGww

WWCATCAGTWK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 153 (10.95%)
Max nb of predicted sites per peak: 3
(HORVU.MOREX.r3.4HG0358770)
Mean nb of predicted sites per peak: 1.08

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: Down_peak-motifs (14/08/2025 17:35)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results