RSAT - position-analysis result

Analysis: result (14/08/2025 16:32)

Command: position-analysis -i $RSAT/public_html/tmp/www-data/2025/08/14/retrieve-seq_2025-08-14.161845_1GRfpB.fasta.fasta.purged -v 1 -sort -nofilter -lth_occ 1 -lth_sig 0 -clust_nb 5 -max_asmb_per_cluster 5 -return chi,sig,rank,distrib,exp_occ,clusters,matrices,graphs,index -1str -noov -l 6 -ci 20 -origin start -o $RSAT/public_html/tmp/www-data/2025/08/14/position-analysis_2025-08-14.163228_RqWWHk/position-analysis.tab

Input files

Type	File
sequences	../retrieve-seq_2025-08-14.161845_1GRfpB.fasta.fasta.purged

Output files

Type	File
output	position-analysis.tab
exp_occ	position-analysis_exp_occ.tab
clusters_k5	position-analysis_clusters_complete_k5.tab
cluster_heatmap_k5	position-analysis_clusters_complete_k5/position-analysis_profile_heatmap.pdf
cluster_occ_profiles_k5	position-analysis_clusters_complete_k5/position-analysis_occ_profiles_per_cluster.pdf
cluster_freq_profiles_k5	position-analysis_clusters_complete_k5/position-analysis_freq_profiles_per_cluster.pdf
cluster_median_profiles_k5	position-analysis_clusters_complete_k5/position-analysis_median_profiles_per_cluster.pdf
cluster_median_profiles_table_k5	position-analysis_clusters_complete_k5/position-analysis_median_profiles_per_cluster.tab
assembly	position-analysis_pssm.asmb
sig_matrices	position-analysis_pssm_sig_matrices.tf
count_matrices	position-analysis_pssm_count_matrices.tf
graph_index	position-analysis_graph_index.html

Graph files

Type	File	Image
logo_m1	position-analysis_pssm_count_matrices_logo_m1.png
logo_m2	position-analysis_pssm_count_matrices_logo_m2.png
logo_m3	position-analysis_pssm_count_matrices_logo_m3.png
logo_m4	position-analysis_pssm_count_matrices_logo_m4.png
logo_m5	position-analysis_pssm_count_matrices_logo_m5.png

Directories

Type	Directory
output	.
graphs	position-analysis_graphs
clusters_k5	position-analysis_clusters_complete_k5