/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/discovered_motifs/peak-motifs_motifs_disco_compa
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	13	55
		file1	2	12	64
		file1	3	10	27
		file1	4	12	66
		file1	5	10	31
		file1	6	12	52
		file1	7	11	39
		file1	8	13	43
		file1	9	13	38
		file1	10	12	19
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		13		55
		file2		2		12		64
		file2		3		10		27
		file2		4		12		66
		file2		5		10		31
		file2		6		12		52
		file2		7		11		39
		file2		8		13		43
		file2		9		13		38
		file2		10		12		19
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m1 0.964 0.964 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m4 0.964 0.964 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m3 0.948 0.948 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m1 0.948 0.948 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m3 0.908 0.908 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m4 0.908 0.908 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m2 0.987 0.897 10 11 10 11 0.9091 1.0000 0.9091 R -1
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m5 0.987 0.897 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 0.877 0.877 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 0.877 0.877 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m4 0.949 0.876 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m1 0.949 0.876 12 13 12 13 0.9231 1.0000 0.9231 D 0
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m4 0.924 0.853 12 13 12 13 0.9231 1.0000 0.9231 D 0
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m4 0.924 0.853 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m2 0.837 0.837 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m5 0.837 0.837 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m3 0.904 0.835 12 13 12 13 0.9231 1.0000 0.9231 D 0
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m4 0.904 0.835 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m5 0.962 0.802 10 12 10 12 0.8333 1.0000 0.8333 D -1
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m3 0.962 0.802 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 0.718 0.718 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 0.718 0.718 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m2 0.785 0.654 10 12 10 12 0.8333 1.0000 0.8333 D -1
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m3 0.785 0.654 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m3 0.779 0.649 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m1 0.779 0.649 10 12 10 12 0.8333 1.0000 0.8333 D -1 
 Host name	rsat
 Job started	2025-08-17.121444
 Job done	2025-08-17.121451
 Seconds	0.28
	user	0.28
	system	0.22
	cuser	5.58
;	csystem	0.83