One-to-n alignments

Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m5_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5)
; oligos_7nt_mkv2_m5; m=0 (reference); ncol1=12; shift=0; ncol=12; vrCCACGAGGhy ; Alignment reference a 5 7 2 0 19 0 0 16 0 0 5 3 c 6 3 14 19 0 19 1 1 0 4 5 7 g 6 6 3 0 0 0 18 2 19 14 3 3 t 2 3 0 0 0 0 0 0 0 1 6 6

oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5)
; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m5; m=1/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; vrCCACGAGGhy ; cor=; Ncor= a 5 7 2 0 19 0 0 16 0 0 5 3 c 6 3 14 19 0 19 1 1 0 4 5 7 g 6 6 3 0 0 0 18 2 19 14 3 3 t 2 3 0 0 0 0 0 0 0 1 6 6

oligos_6nt_mkv2_m2_shift0 (oligos_6nt_mkv2_m2)
; oligos_7nt_mkv2_m5 versus oligos_6nt_mkv2_m2; m=2/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 0.8372; srCCACGTGGys ; cor=; Ncor= a 11 18 3 3 56 0 3 5 0 4 12 11 c 17 13 44 60 2 59 2 1 1 13 21 25 g 25 21 13 1 1 2 59 2 60 44 13 17 t 11 12 4 0 5 3 0 56 3 3 18 11

oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)
; oligos_7nt_mkv2_m5 versus oligos_6nt_mkv2_m3; m=3/4; ncol2=10; w=0; offset=1; strand=D; shift=1; score=0.80178; -rsCACGAGsy- ; cor=; Ncor= a 0 9 4 0 27 0 0 27 0 3 6 0 c 0 5 11 27 0 27 0 0 0 9 10 0 g 0 9 9 0 0 0 27 0 27 11 4 0 t 0 4 3 0 0 0 0 0 0 4 7 0

oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m1; m=4/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.717854; sggCACGTGccs ; cor=; Ncor= a 10 12 7 1 46 0 0 4 0 3 12 11 c 17 11 8 51 2 52 0 0 0 34 17 14 g 14 17 34 0 0 0 52 2 51 8 11 17 t 11 12 3 0 4 0 0 46 1 7 12 10

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m4_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m4_shift0 (oligos_6nt_mkv2_m4)
; oligos_6nt_mkv2_m4; m=0 (reference); ncol1=12; shift=0; ncol=12; crsCTGTCArya ; Alignment reference a 15 18 12 1 0 0 2 1 62 33 16 21 c 27 14 26 61 3 2 1 63 2 9 19 15 g 11 20 21 1 0 63 2 1 0 17 12 15 t 13 14 7 3 63 1 61 1 2 7 19 15

oligos_6nt_mkv2_m4_shift0 (oligos_6nt_mkv2_m4)
; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m4; m=1/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; crsCTGTCArya ; cor=; Ncor= a 15 18 12 1 0 0 2 1 62 33 16 21 c 27 14 26 61 3 2 1 63 2 9 19 15 g 11 20 21 1 0 63 2 1 0 17 12 15 t 13 14 7 3 63 1 61 1 2 7 19 15

oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1)
; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m1; m=2/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.87645; yvvCTGTCAgak ; cor=; Ncor= a 11 16 14 1 2 0 1 1 53 8 27 11 c 19 14 19 49 1 0 2 54 2 6 9 13 g 11 17 20 4 2 55 1 0 0 35 6 16 t 14 8 2 1 50 0 51 0 0 6 13 15

oligos_7nt_mkv2_m4_shift0 (oligos_7nt_mkv2_m4)
; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m4; m=3/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.85295; yrcCTGTCAGtb ; cor=; Ncor= a 7 10 3 0 1 0 3 1 35 1 9 6 c 12 9 25 37 1 1 0 37 2 3 9 10 g 6 11 9 1 1 37 0 0 0 29 6 12 t 13 8 1 0 35 0 35 0 1 5 14 10

oligos_7nt_mkv2_m3_shift0 (oligos_7nt_mkv2_m3)
; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m3; m=4/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.834681; swGCTGTCAGmy ; cor=; Ncor= a 9 14 3 0 0 0 4 0 42 5 13 10 c 16 9 4 39 1 1 2 43 1 4 12 12 g 11 9 35 3 0 41 2 0 0 33 8 7 t 7 11 1 1 42 1 35 0 0 1 10 14

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m3_shift1 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)
; oligos_6nt_mkv2_m3; m=0 (reference); ncol1=10; shift=1; ncol=11; -rsCACGAGsy ; Alignment reference a 0 9 4 0 27 0 0 27 0 3 6 c 0 5 11 27 0 27 0 0 0 9 10 g 0 9 9 0 0 0 27 0 27 11 4 t 0 4 3 0 0 0 0 0 0 4 7

oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)
; oligos_6nt_mkv2_m3 versus oligos_6nt_mkv2_m3; m=1/4; ncol2=10; w=0; offset=0; strand=D; shift=1; score= 1; -rsCACGAGsy ; cor=; Ncor= a 0 9 4 0 27 0 0 27 0 3 6 c 0 5 11 27 0 27 0 0 0 9 10 g 0 9 9 0 0 0 27 0 27 11 4 t 0 4 3 0 0 0 0 0 0 4 7

oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5)
; oligos_6nt_mkv2_m3 versus oligos_7nt_mkv2_m5; m=2/4; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.80178; vrCCACGAGGh ; cor=; Ncor= a 5 7 2 0 19 0 0 16 0 0 5 c 6 3 14 19 0 19 1 1 0 4 5 g 6 6 3 0 0 0 18 2 19 14 3 t 2 3 0 0 0 0 0 0 0 1 6

oligos_6nt_mkv2_m2_shift0 (oligos_6nt_mkv2_m2)
; oligos_6nt_mkv2_m3 versus oligos_6nt_mkv2_m2; m=3/4; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.654248; srCCACGTGGy ; cor=; Ncor= a 11 18 3 3 56 0 3 5 0 4 12 c 17 13 44 60 2 59 2 1 1 13 21 g 25 21 13 1 1 2 59 2 60 44 13 t 11 12 4 0 5 3 0 56 3 3 18

oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1)
; oligos_6nt_mkv2_m3 versus oligos_7nt_mkv2_m1; m=4/4; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.649095; sggCACGTGcc ; cor=; Ncor= a 10 12 7 1 46 0 0 4 0 3 12 c 17 11 8 51 2 52 0 0 0 34 17 g 14 17 34 0 0 0 52 2 51 8 11 t 11 12 3 0 4 0 0 46 1 7 12

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m1_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=12; shift=0; ncol=12; sggCACGTGccs ; Alignment reference a 10 12 7 1 46 0 0 4 0 3 12 11 c 17 11 8 51 2 52 0 0 0 34 17 14 g 14 17 34 0 0 0 52 2 51 8 11 17 t 11 12 3 0 4 0 0 46 1 7 12 10

oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m1; m=1/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; sggCACGTGccs ; cor=; Ncor= a 10 12 7 1 46 0 0 4 0 3 12 11 c 17 11 8 51 2 52 0 0 0 34 17 14 g 14 17 34 0 0 0 52 2 51 8 11 17 t 11 12 3 0 4 0 0 46 1 7 12 10

oligos_6nt_mkv2_m2_shift0 (oligos_6nt_mkv2_m2)
; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m2; m=2/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.877179; srCCACGTGGys ; cor=; Ncor= a 11 18 3 3 56 0 3 5 0 4 12 11 c 17 13 44 60 2 59 2 1 1 13 21 25 g 25 21 13 1 1 2 59 2 60 44 13 17 t 11 12 4 0 5 3 0 56 3 3 18 11

oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5)
; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m5; m=3/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.717854; vrCCACGAGGhy ; cor=; Ncor= a 5 7 2 0 19 0 0 16 0 0 5 3 c 6 3 14 19 0 19 1 1 0 4 5 7 g 6 6 3 0 0 0 18 2 19 14 3 3 t 2 3 0 0 0 0 0 0 0 1 6 6

oligos_6nt_mkv2_m3_rc_shift1 (oligos_6nt_mkv2_m3_rc)
; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m3_rc; m=4/4; ncol2=10; w=0; offset=1; strand=R; shift=1; score=0.649095; -rsCTCGTGsy- ; cor=; Ncor= a 0 7 4 0 0 0 0 0 0 3 4 0 c 0 4 11 27 0 27 0 0 0 9 9 0 g 0 10 9 0 0 0 27 0 27 11 5 0 t 0 6 3 0 27 0 0 27 0 4 9 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m2_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)
; oligos_7nt_mkv2_m2; m=0 (reference); ncol1=11; shift=0; ncol=11; hdTACCGTAwk ; Alignment reference a 12 11 0 36 1 1 1 2 32 11 6 c 10 5 0 0 36 28 0 1 3 7 9 g 7 12 2 2 1 9 38 0 3 7 11 t 10 11 37 1 1 1 0 36 1 14 13

oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)
; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m2; m=1/2; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; hdTACCGTAwk ; cor=; Ncor= a 12 11 0 36 1 1 1 2 32 11 6 c 10 5 0 0 36 28 0 1 3 7 9 g 7 12 2 2 1 9 38 0 3 7 11 t 10 11 37 1 1 1 0 36 1 14 13

oligos_6nt_mkv2_m5_rc_shift0 (oligos_6nt_mkv2_m5_rc)
; oligos_7nt_mkv2_m2 versus oligos_6nt_mkv2_m5_rc; m=2/2; ncol2=10; w=0; offset=0; strand=R; shift=0; score=0.897393; bkTACsGTaw- ; cor=; Ncor= a 6 7 1 31 1 1 0 0 21 10 0 c 8 3 0 0 29 20 0 0 4 7 0 g 9 11 0 0 0 10 31 1 4 4 0 t 8 10 30 0 1 0 0 30 2 10 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m4_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m4_shift0 (oligos_7nt_mkv2_m4)
; oligos_7nt_mkv2_m4; m=0 (reference); ncol1=13; shift=0; ncol=13; yrcCTGTCAGtby ; Alignment reference a 7 10 3 0 1 0 3 1 35 1 9 6 4 c 12 9 25 37 1 1 0 37 2 3 9 10 13 g 6 11 9 1 1 37 0 0 0 29 6 12 5 t 13 8 1 0 35 0 35 0 1 5 14 10 16

oligos_7nt_mkv2_m4_shift0 (oligos_7nt_mkv2_m4)
; oligos_7nt_mkv2_m4 versus oligos_7nt_mkv2_m4; m=1/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; yrcCTGTCAGtby ; cor=; Ncor= a 7 10 3 0 1 0 3 1 35 1 9 6 4 c 12 9 25 37 1 1 0 37 2 3 9 10 13 g 6 11 9 1 1 37 0 0 0 29 6 12 5 t 13 8 1 0 35 0 35 0 1 5 14 10 16

oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1)
; oligos_7nt_mkv2_m4 versus oligos_6nt_mkv2_m1; m=2/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.963878; yvvCTGTCAgaky ; cor=; Ncor= a 11 16 14 1 2 0 1 1 53 8 27 11 10 c 19 14 19 49 1 0 2 54 2 6 9 13 17 g 11 17 20 4 2 55 1 0 0 35 6 16 11 t 14 8 2 1 50 0 51 0 0 6 13 15 17

oligos_7nt_mkv2_m3_shift0 (oligos_7nt_mkv2_m3)
; oligos_7nt_mkv2_m4 versus oligos_7nt_mkv2_m3; m=3/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.908235; swGCTGTCAGmyb ; cor=; Ncor= a 9 14 3 0 0 0 4 0 42 5 13 10 6 c 16 9 4 39 1 1 2 43 1 4 12 12 13 g 11 9 35 3 0 41 2 0 0 33 8 7 11 t 7 11 1 1 42 1 35 0 0 1 10 14 13

oligos_6nt_mkv2_m4_shift0 (oligos_6nt_mkv2_m4)
; oligos_7nt_mkv2_m4 versus oligos_6nt_mkv2_m4; m=4/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.85295; crsCTGTCArya- ; cor=; Ncor= a 15 18 12 1 0 0 2 1 62 33 16 21 0 c 27 14 26 61 3 2 1 63 2 9 19 15 0 g 11 20 21 1 0 63 2 1 0 17 12 15 0 t 13 14 7 3 63 1 61 1 2 7 19 15 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m5_shift1 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m5_shift1 (oligos_6nt_mkv2_m5)
; oligos_6nt_mkv2_m5; m=0 (reference); ncol1=10; shift=1; ncol=11; -wtACsGTAmv ; Alignment reference a 0 10 2 30 0 0 1 0 30 10 8 c 0 4 4 1 31 10 0 0 0 11 9 g 0 7 4 0 0 20 29 0 0 3 8 t 0 10 21 0 0 1 1 31 1 7 6

oligos_6nt_mkv2_m5_shift1 (oligos_6nt_mkv2_m5)
; oligos_6nt_mkv2_m5 versus oligos_6nt_mkv2_m5; m=1/2; ncol2=10; w=0; offset=0; strand=D; shift=1; score= 1; -wtACsGTAmv ; cor=; Ncor= a 0 10 2 30 0 0 1 0 30 10 8 c 0 4 4 1 31 10 0 0 0 11 9 g 0 7 4 0 0 20 29 0 0 3 8 t 0 10 21 0 0 1 1 31 1 7 6

oligos_7nt_mkv2_m2_rc_shift0 (oligos_7nt_mkv2_m2_rc)
; oligos_6nt_mkv2_m5 versus oligos_7nt_mkv2_m2_rc; m=2/2; ncol2=11; w=-1; offset=-1; strand=R; shift=0; score=0.897393; mwTACGGTAhd ; cor=; Ncor= a 13 14 1 36 0 1 1 1 37 11 10 c 11 7 3 0 38 9 1 2 2 12 7 g 9 7 3 1 0 28 36 0 0 5 10 t 6 11 32 2 1 1 1 36 0 11 12

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m3_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m3_shift0 (oligos_7nt_mkv2_m3)
; oligos_7nt_mkv2_m3; m=0 (reference); ncol1=13; shift=0; ncol=13; swGCTGTCAGmyb ; Alignment reference a 9 14 3 0 0 0 4 0 42 5 13 10 6 c 16 9 4 39 1 1 2 43 1 4 12 12 13 g 11 9 35 3 0 41 2 0 0 33 8 7 11 t 7 11 1 1 42 1 35 0 0 1 10 14 13

oligos_7nt_mkv2_m3_shift0 (oligos_7nt_mkv2_m3)
; oligos_7nt_mkv2_m3 versus oligos_7nt_mkv2_m3; m=1/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; swGCTGTCAGmyb ; cor=; Ncor= a 9 14 3 0 0 0 4 0 42 5 13 10 6 c 16 9 4 39 1 1 2 43 1 4 12 12 13 g 11 9 35 3 0 41 2 0 0 33 8 7 11 t 7 11 1 1 42 1 35 0 0 1 10 14 13

oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1)
; oligos_7nt_mkv2_m3 versus oligos_6nt_mkv2_m1; m=2/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.947699; yvvCTGTCAgaky ; cor=; Ncor= a 11 16 14 1 2 0 1 1 53 8 27 11 10 c 19 14 19 49 1 0 2 54 2 6 9 13 17 g 11 17 20 4 2 55 1 0 0 35 6 16 11 t 14 8 2 1 50 0 51 0 0 6 13 15 17

oligos_7nt_mkv2_m4_shift0 (oligos_7nt_mkv2_m4)
; oligos_7nt_mkv2_m3 versus oligos_7nt_mkv2_m4; m=3/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.908235; yrcCTGTCAGtby ; cor=; Ncor= a 7 10 3 0 1 0 3 1 35 1 9 6 4 c 12 9 25 37 1 1 0 37 2 3 9 10 13 g 6 11 9 1 1 37 0 0 0 29 6 12 5 t 13 8 1 0 35 0 35 0 1 5 14 10 16

oligos_6nt_mkv2_m4_shift0 (oligos_6nt_mkv2_m4)
; oligos_7nt_mkv2_m3 versus oligos_6nt_mkv2_m4; m=4/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.834681; crsCTGTCArya- ; cor=; Ncor= a 15 18 12 1 0 0 2 1 62 33 16 21 0 c 27 14 26 61 3 2 1 63 2 9 19 15 0 g 11 20 21 1 0 63 2 1 0 17 12 15 0 t 13 14 7 3 63 1 61 1 2 7 19 15 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m2_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m2_shift0 (oligos_6nt_mkv2_m2)
; oligos_6nt_mkv2_m2; m=0 (reference); ncol1=12; shift=0; ncol=12; srCCACGTGGys ; Alignment reference a 11 18 3 3 56 0 3 5 0 4 12 11 c 17 13 44 60 2 59 2 1 1 13 21 25 g 25 21 13 1 1 2 59 2 60 44 13 17 t 11 12 4 0 5 3 0 56 3 3 18 11

oligos_6nt_mkv2_m2_shift0 (oligos_6nt_mkv2_m2)
; oligos_6nt_mkv2_m2 versus oligos_6nt_mkv2_m2; m=1/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; srCCACGTGGys ; cor=; Ncor= a 11 18 3 3 56 0 3 5 0 4 12 11 c 17 13 44 60 2 59 2 1 1 13 21 25 g 25 21 13 1 1 2 59 2 60 44 13 17 t 11 12 4 0 5 3 0 56 3 3 18 11

oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1)
; oligos_6nt_mkv2_m2 versus oligos_7nt_mkv2_m1; m=2/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.877179; sggCACGTGccs ; cor=; Ncor= a 10 12 7 1 46 0 0 4 0 3 12 11 c 17 11 8 51 2 52 0 0 0 34 17 14 g 14 17 34 0 0 0 52 2 51 8 11 17 t 11 12 3 0 4 0 0 46 1 7 12 10

oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5)
; oligos_6nt_mkv2_m2 versus oligos_7nt_mkv2_m5; m=3/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 0.8372; vrCCACGAGGhy ; cor=; Ncor= a 5 7 2 0 19 0 0 16 0 0 5 3 c 6 3 14 19 0 19 1 1 0 4 5 7 g 6 6 3 0 0 0 18 2 19 14 3 3 t 2 3 0 0 0 0 0 0 0 1 6 6

oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)
; oligos_6nt_mkv2_m2 versus oligos_6nt_mkv2_m3; m=4/4; ncol2=10; w=0; offset=1; strand=D; shift=1; score=0.654248; -rsCACGAGsy- ; cor=; Ncor= a 0 9 4 0 27 0 0 27 0 3 6 0 c 0 5 11 27 0 27 0 0 0 9 10 0 g 0 9 9 0 0 0 27 0 27 11 4 0 t 0 4 3 0 0 0 0 0 0 4 7 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m1_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1)
; oligos_6nt_mkv2_m1; m=0 (reference); ncol1=13; shift=0; ncol=13; yvvCTGTCAgaky ; Alignment reference a 11 16 14 1 2 0 1 1 53 8 27 11 10 c 19 14 19 49 1 0 2 54 2 6 9 13 17 g 11 17 20 4 2 55 1 0 0 35 6 16 11 t 14 8 2 1 50 0 51 0 0 6 13 15 17

oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1)
; oligos_6nt_mkv2_m1 versus oligos_6nt_mkv2_m1; m=1/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; yvvCTGTCAgaky ; cor=; Ncor= a 11 16 14 1 2 0 1 1 53 8 27 11 10 c 19 14 19 49 1 0 2 54 2 6 9 13 17 g 11 17 20 4 2 55 1 0 0 35 6 16 11 t 14 8 2 1 50 0 51 0 0 6 13 15 17

oligos_7nt_mkv2_m4_shift0 (oligos_7nt_mkv2_m4)
; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m4; m=2/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.963878; yrcCTGTCAGtby ; cor=; Ncor= a 7 10 3 0 1 0 3 1 35 1 9 6 4 c 12 9 25 37 1 1 0 37 2 3 9 10 13 g 6 11 9 1 1 37 0 0 0 29 6 12 5 t 13 8 1 0 35 0 35 0 1 5 14 10 16

oligos_7nt_mkv2_m3_shift0 (oligos_7nt_mkv2_m3)
; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m3; m=3/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.947699; swGCTGTCAGmyb ; cor=; Ncor= a 9 14 3 0 0 0 4 0 42 5 13 10 6 c 16 9 4 39 1 1 2 43 1 4 12 12 13 g 11 9 35 3 0 41 2 0 0 33 8 7 11 t 7 11 1 1 42 1 35 0 0 1 10 14 13

oligos_6nt_mkv2_m4_shift0 (oligos_6nt_mkv2_m4)
; oligos_6nt_mkv2_m1 versus oligos_6nt_mkv2_m4; m=4/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.87645; crsCTGTCArya- ; cor=; Ncor= a 15 18 12 1 0 0 2 1 62 33 16 21 0 c 27 14 26 61 3 2 1 63 2 9 19 15 0 g 11 20 21 1 0 63 2 1 0 17 12 15 0 t 13 14 7 3 63 1 61 1 2 7 19 15 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5)				; oligos_7nt_mkv2_m5; m=0 (reference); ncol1=12; shift=0; ncol=12; vrCCACGAGGhy ; Alignment reference a 5 7 2 0 19 0 0 16 0 0 5 3 c 6 3 14 19 0 19 1 1 0 4 5 7 g 6 6 3 0 0 0 18 2 19 14 3 3 t 2 3 0 0 0 0 0 0 0 1 6 6
oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5)				; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m5; m=1/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; vrCCACGAGGhy ; cor=; Ncor= a 5 7 2 0 19 0 0 16 0 0 5 3 c 6 3 14 19 0 19 1 1 0 4 5 7 g 6 6 3 0 0 0 18 2 19 14 3 3 t 2 3 0 0 0 0 0 0 0 1 6 6
oligos_6nt_mkv2_m2_shift0 (oligos_6nt_mkv2_m2)				; oligos_7nt_mkv2_m5 versus oligos_6nt_mkv2_m2; m=2/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 0.8372; srCCACGTGGys ; cor=; Ncor= a 11 18 3 3 56 0 3 5 0 4 12 11 c 17 13 44 60 2 59 2 1 1 13 21 25 g 25 21 13 1 1 2 59 2 60 44 13 17 t 11 12 4 0 5 3 0 56 3 3 18 11
oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)				; oligos_7nt_mkv2_m5 versus oligos_6nt_mkv2_m3; m=3/4; ncol2=10; w=0; offset=1; strand=D; shift=1; score=0.80178; -rsCACGAGsy- ; cor=; Ncor= a 0 9 4 0 27 0 0 27 0 3 6 0 c 0 5 11 27 0 27 0 0 0 9 10 0 g 0 9 9 0 0 0 27 0 27 11 4 0 t 0 4 3 0 0 0 0 0 0 4 7 0
oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1)				; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m1; m=4/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.717854; sggCACGTGccs ; cor=; Ncor= a 10 12 7 1 46 0 0 4 0 3 12 11 c 17 11 8 51 2 52 0 0 0 34 17 14 g 14 17 34 0 0 0 52 2 51 8 11 17 t 11 12 3 0 4 0 0 46 1 7 12 10

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m4_shift0 (oligos_6nt_mkv2_m4)				; oligos_6nt_mkv2_m4; m=0 (reference); ncol1=12; shift=0; ncol=12; crsCTGTCArya ; Alignment reference a 15 18 12 1 0 0 2 1 62 33 16 21 c 27 14 26 61 3 2 1 63 2 9 19 15 g 11 20 21 1 0 63 2 1 0 17 12 15 t 13 14 7 3 63 1 61 1 2 7 19 15
oligos_6nt_mkv2_m4_shift0 (oligos_6nt_mkv2_m4)				; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m4; m=1/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; crsCTGTCArya ; cor=; Ncor= a 15 18 12 1 0 0 2 1 62 33 16 21 c 27 14 26 61 3 2 1 63 2 9 19 15 g 11 20 21 1 0 63 2 1 0 17 12 15 t 13 14 7 3 63 1 61 1 2 7 19 15
oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1)				; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m1; m=2/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.87645; yvvCTGTCAgak ; cor=; Ncor= a 11 16 14 1 2 0 1 1 53 8 27 11 c 19 14 19 49 1 0 2 54 2 6 9 13 g 11 17 20 4 2 55 1 0 0 35 6 16 t 14 8 2 1 50 0 51 0 0 6 13 15
oligos_7nt_mkv2_m4_shift0 (oligos_7nt_mkv2_m4)				; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m4; m=3/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.85295; yrcCTGTCAGtb ; cor=; Ncor= a 7 10 3 0 1 0 3 1 35 1 9 6 c 12 9 25 37 1 1 0 37 2 3 9 10 g 6 11 9 1 1 37 0 0 0 29 6 12 t 13 8 1 0 35 0 35 0 1 5 14 10
oligos_7nt_mkv2_m3_shift0 (oligos_7nt_mkv2_m3)				; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m3; m=4/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.834681; swGCTGTCAGmy ; cor=; Ncor= a 9 14 3 0 0 0 4 0 42 5 13 10 c 16 9 4 39 1 1 2 43 1 4 12 12 g 11 9 35 3 0 41 2 0 0 33 8 7 t 7 11 1 1 42 1 35 0 0 1 10 14

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)				; oligos_6nt_mkv2_m3; m=0 (reference); ncol1=10; shift=1; ncol=11; -rsCACGAGsy ; Alignment reference a 0 9 4 0 27 0 0 27 0 3 6 c 0 5 11 27 0 27 0 0 0 9 10 g 0 9 9 0 0 0 27 0 27 11 4 t 0 4 3 0 0 0 0 0 0 4 7
oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)				; oligos_6nt_mkv2_m3 versus oligos_6nt_mkv2_m3; m=1/4; ncol2=10; w=0; offset=0; strand=D; shift=1; score= 1; -rsCACGAGsy ; cor=; Ncor= a 0 9 4 0 27 0 0 27 0 3 6 c 0 5 11 27 0 27 0 0 0 9 10 g 0 9 9 0 0 0 27 0 27 11 4 t 0 4 3 0 0 0 0 0 0 4 7
oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5)				; oligos_6nt_mkv2_m3 versus oligos_7nt_mkv2_m5; m=2/4; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.80178; vrCCACGAGGh ; cor=; Ncor= a 5 7 2 0 19 0 0 16 0 0 5 c 6 3 14 19 0 19 1 1 0 4 5 g 6 6 3 0 0 0 18 2 19 14 3 t 2 3 0 0 0 0 0 0 0 1 6
oligos_6nt_mkv2_m2_shift0 (oligos_6nt_mkv2_m2)				; oligos_6nt_mkv2_m3 versus oligos_6nt_mkv2_m2; m=3/4; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.654248; srCCACGTGGy ; cor=; Ncor= a 11 18 3 3 56 0 3 5 0 4 12 c 17 13 44 60 2 59 2 1 1 13 21 g 25 21 13 1 1 2 59 2 60 44 13 t 11 12 4 0 5 3 0 56 3 3 18
oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1)				; oligos_6nt_mkv2_m3 versus oligos_7nt_mkv2_m1; m=4/4; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.649095; sggCACGTGcc ; cor=; Ncor= a 10 12 7 1 46 0 0 4 0 3 12 c 17 11 8 51 2 52 0 0 0 34 17 g 14 17 34 0 0 0 52 2 51 8 11 t 11 12 3 0 4 0 0 46 1 7 12

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1)				; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=12; shift=0; ncol=12; sggCACGTGccs ; Alignment reference a 10 12 7 1 46 0 0 4 0 3 12 11 c 17 11 8 51 2 52 0 0 0 34 17 14 g 14 17 34 0 0 0 52 2 51 8 11 17 t 11 12 3 0 4 0 0 46 1 7 12 10
oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1)				; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m1; m=1/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; sggCACGTGccs ; cor=; Ncor= a 10 12 7 1 46 0 0 4 0 3 12 11 c 17 11 8 51 2 52 0 0 0 34 17 14 g 14 17 34 0 0 0 52 2 51 8 11 17 t 11 12 3 0 4 0 0 46 1 7 12 10
oligos_6nt_mkv2_m2_shift0 (oligos_6nt_mkv2_m2)				; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m2; m=2/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.877179; srCCACGTGGys ; cor=; Ncor= a 11 18 3 3 56 0 3 5 0 4 12 11 c 17 13 44 60 2 59 2 1 1 13 21 25 g 25 21 13 1 1 2 59 2 60 44 13 17 t 11 12 4 0 5 3 0 56 3 3 18 11
oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5)				; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m5; m=3/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.717854; vrCCACGAGGhy ; cor=; Ncor= a 5 7 2 0 19 0 0 16 0 0 5 3 c 6 3 14 19 0 19 1 1 0 4 5 7 g 6 6 3 0 0 0 18 2 19 14 3 3 t 2 3 0 0 0 0 0 0 0 1 6 6
oligos_6nt_mkv2_m3_rc_shift1 (oligos_6nt_mkv2_m3_rc)				; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m3_rc; m=4/4; ncol2=10; w=0; offset=1; strand=R; shift=1; score=0.649095; -rsCTCGTGsy- ; cor=; Ncor= a 0 7 4 0 0 0 0 0 0 3 4 0 c 0 4 11 27 0 27 0 0 0 9 9 0 g 0 10 9 0 0 0 27 0 27 11 5 0 t 0 6 3 0 27 0 0 27 0 4 9 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m4_shift0 (oligos_7nt_mkv2_m4)				; oligos_7nt_mkv2_m4; m=0 (reference); ncol1=13; shift=0; ncol=13; yrcCTGTCAGtby ; Alignment reference a 7 10 3 0 1 0 3 1 35 1 9 6 4 c 12 9 25 37 1 1 0 37 2 3 9 10 13 g 6 11 9 1 1 37 0 0 0 29 6 12 5 t 13 8 1 0 35 0 35 0 1 5 14 10 16
oligos_7nt_mkv2_m4_shift0 (oligos_7nt_mkv2_m4)				; oligos_7nt_mkv2_m4 versus oligos_7nt_mkv2_m4; m=1/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; yrcCTGTCAGtby ; cor=; Ncor= a 7 10 3 0 1 0 3 1 35 1 9 6 4 c 12 9 25 37 1 1 0 37 2 3 9 10 13 g 6 11 9 1 1 37 0 0 0 29 6 12 5 t 13 8 1 0 35 0 35 0 1 5 14 10 16
oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1)				; oligos_7nt_mkv2_m4 versus oligos_6nt_mkv2_m1; m=2/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.963878; yvvCTGTCAgaky ; cor=; Ncor= a 11 16 14 1 2 0 1 1 53 8 27 11 10 c 19 14 19 49 1 0 2 54 2 6 9 13 17 g 11 17 20 4 2 55 1 0 0 35 6 16 11 t 14 8 2 1 50 0 51 0 0 6 13 15 17
oligos_7nt_mkv2_m3_shift0 (oligos_7nt_mkv2_m3)				; oligos_7nt_mkv2_m4 versus oligos_7nt_mkv2_m3; m=3/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.908235; swGCTGTCAGmyb ; cor=; Ncor= a 9 14 3 0 0 0 4 0 42 5 13 10 6 c 16 9 4 39 1 1 2 43 1 4 12 12 13 g 11 9 35 3 0 41 2 0 0 33 8 7 11 t 7 11 1 1 42 1 35 0 0 1 10 14 13
oligos_6nt_mkv2_m4_shift0 (oligos_6nt_mkv2_m4)				; oligos_7nt_mkv2_m4 versus oligos_6nt_mkv2_m4; m=4/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.85295; crsCTGTCArya- ; cor=; Ncor= a 15 18 12 1 0 0 2 1 62 33 16 21 0 c 27 14 26 61 3 2 1 63 2 9 19 15 0 g 11 20 21 1 0 63 2 1 0 17 12 15 0 t 13 14 7 3 63 1 61 1 2 7 19 15 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m3_shift0 (oligos_7nt_mkv2_m3)				; oligos_7nt_mkv2_m3; m=0 (reference); ncol1=13; shift=0; ncol=13; swGCTGTCAGmyb ; Alignment reference a 9 14 3 0 0 0 4 0 42 5 13 10 6 c 16 9 4 39 1 1 2 43 1 4 12 12 13 g 11 9 35 3 0 41 2 0 0 33 8 7 11 t 7 11 1 1 42 1 35 0 0 1 10 14 13
oligos_7nt_mkv2_m3_shift0 (oligos_7nt_mkv2_m3)				; oligos_7nt_mkv2_m3 versus oligos_7nt_mkv2_m3; m=1/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; swGCTGTCAGmyb ; cor=; Ncor= a 9 14 3 0 0 0 4 0 42 5 13 10 6 c 16 9 4 39 1 1 2 43 1 4 12 12 13 g 11 9 35 3 0 41 2 0 0 33 8 7 11 t 7 11 1 1 42 1 35 0 0 1 10 14 13
oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1)				; oligos_7nt_mkv2_m3 versus oligos_6nt_mkv2_m1; m=2/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.947699; yvvCTGTCAgaky ; cor=; Ncor= a 11 16 14 1 2 0 1 1 53 8 27 11 10 c 19 14 19 49 1 0 2 54 2 6 9 13 17 g 11 17 20 4 2 55 1 0 0 35 6 16 11 t 14 8 2 1 50 0 51 0 0 6 13 15 17
oligos_7nt_mkv2_m4_shift0 (oligos_7nt_mkv2_m4)				; oligos_7nt_mkv2_m3 versus oligos_7nt_mkv2_m4; m=3/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.908235; yrcCTGTCAGtby ; cor=; Ncor= a 7 10 3 0 1 0 3 1 35 1 9 6 4 c 12 9 25 37 1 1 0 37 2 3 9 10 13 g 6 11 9 1 1 37 0 0 0 29 6 12 5 t 13 8 1 0 35 0 35 0 1 5 14 10 16
oligos_6nt_mkv2_m4_shift0 (oligos_6nt_mkv2_m4)				; oligos_7nt_mkv2_m3 versus oligos_6nt_mkv2_m4; m=4/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.834681; crsCTGTCArya- ; cor=; Ncor= a 15 18 12 1 0 0 2 1 62 33 16 21 0 c 27 14 26 61 3 2 1 63 2 9 19 15 0 g 11 20 21 1 0 63 2 1 0 17 12 15 0 t 13 14 7 3 63 1 61 1 2 7 19 15 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m2_shift0 (oligos_6nt_mkv2_m2)				; oligos_6nt_mkv2_m2; m=0 (reference); ncol1=12; shift=0; ncol=12; srCCACGTGGys ; Alignment reference a 11 18 3 3 56 0 3 5 0 4 12 11 c 17 13 44 60 2 59 2 1 1 13 21 25 g 25 21 13 1 1 2 59 2 60 44 13 17 t 11 12 4 0 5 3 0 56 3 3 18 11
oligos_6nt_mkv2_m2_shift0 (oligos_6nt_mkv2_m2)				; oligos_6nt_mkv2_m2 versus oligos_6nt_mkv2_m2; m=1/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; srCCACGTGGys ; cor=; Ncor= a 11 18 3 3 56 0 3 5 0 4 12 11 c 17 13 44 60 2 59 2 1 1 13 21 25 g 25 21 13 1 1 2 59 2 60 44 13 17 t 11 12 4 0 5 3 0 56 3 3 18 11
oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1)				; oligos_6nt_mkv2_m2 versus oligos_7nt_mkv2_m1; m=2/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.877179; sggCACGTGccs ; cor=; Ncor= a 10 12 7 1 46 0 0 4 0 3 12 11 c 17 11 8 51 2 52 0 0 0 34 17 14 g 14 17 34 0 0 0 52 2 51 8 11 17 t 11 12 3 0 4 0 0 46 1 7 12 10
oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5)				; oligos_6nt_mkv2_m2 versus oligos_7nt_mkv2_m5; m=3/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 0.8372; vrCCACGAGGhy ; cor=; Ncor= a 5 7 2 0 19 0 0 16 0 0 5 3 c 6 3 14 19 0 19 1 1 0 4 5 7 g 6 6 3 0 0 0 18 2 19 14 3 3 t 2 3 0 0 0 0 0 0 0 1 6 6
oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)				; oligos_6nt_mkv2_m2 versus oligos_6nt_mkv2_m3; m=4/4; ncol2=10; w=0; offset=1; strand=D; shift=1; score=0.654248; -rsCACGAGsy- ; cor=; Ncor= a 0 9 4 0 27 0 0 27 0 3 6 0 c 0 5 11 27 0 27 0 0 0 9 10 0 g 0 9 9 0 0 0 27 0 27 11 4 0 t 0 4 3 0 0 0 0 0 0 4 7 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1)				; oligos_6nt_mkv2_m1; m=0 (reference); ncol1=13; shift=0; ncol=13; yvvCTGTCAgaky ; Alignment reference a 11 16 14 1 2 0 1 1 53 8 27 11 10 c 19 14 19 49 1 0 2 54 2 6 9 13 17 g 11 17 20 4 2 55 1 0 0 35 6 16 11 t 14 8 2 1 50 0 51 0 0 6 13 15 17
oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1)				; oligos_6nt_mkv2_m1 versus oligos_6nt_mkv2_m1; m=1/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; yvvCTGTCAgaky ; cor=; Ncor= a 11 16 14 1 2 0 1 1 53 8 27 11 10 c 19 14 19 49 1 0 2 54 2 6 9 13 17 g 11 17 20 4 2 55 1 0 0 35 6 16 11 t 14 8 2 1 50 0 51 0 0 6 13 15 17
oligos_7nt_mkv2_m4_shift0 (oligos_7nt_mkv2_m4)				; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m4; m=2/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.963878; yrcCTGTCAGtby ; cor=; Ncor= a 7 10 3 0 1 0 3 1 35 1 9 6 4 c 12 9 25 37 1 1 0 37 2 3 9 10 13 g 6 11 9 1 1 37 0 0 0 29 6 12 5 t 13 8 1 0 35 0 35 0 1 5 14 10 16
oligos_7nt_mkv2_m3_shift0 (oligos_7nt_mkv2_m3)				; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m3; m=3/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.947699; swGCTGTCAGmyb ; cor=; Ncor= a 9 14 3 0 0 0 4 0 42 5 13 10 6 c 16 9 4 39 1 1 2 43 1 4 12 12 13 g 11 9 35 3 0 41 2 0 0 33 8 7 11 t 7 11 1 1 42 1 35 0 0 1 10 14 13
oligos_6nt_mkv2_m4_shift0 (oligos_6nt_mkv2_m4)				; oligos_6nt_mkv2_m1 versus oligos_6nt_mkv2_m4; m=4/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.87645; crsCTGTCArya- ; cor=; Ncor= a 15 18 12 1 0 0 2 1 62 33 16 21 0 c 27 14 26 61 3 2 1 63 2 9 19 15 0 g 11 20 21 1 0 63 2 1 0 17 12 15 0 t 13 14 7 3 63 1 61 1 2 7 19 15 0