; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	11	16	14	1	2	0	1	1	53	8	27	11	10
c	19	14	19	49	1	0	2	54	2	6	9	13	17
g	11	17	20	4	2	55	1	0	0	35	6	16	11
t	14	8	2	1	50	0	51	0	0	6	13	15	17
//
; Sites	55
>site_0
CGCCTGTCACTTT
>site_1
TCCCTGTCATTGA
>site_2
CCGCTGTCAAATC
>site_3
CAGCTGTCAGTGT
>site_4
AAAATGTCAGATC
>site_5
CCACGGTCAGACT
>site_6
CAACTGTCAGTGT
>site_7
CACCTGTCATCTT
>site_8
CAACTGTCAGCCC
>site_9
TCCCTGTCCGTCC
>site_10
GGACCGTCAGAGC
>site_11
CGGCTGTCATTCG
>site_12
TACCAGTCAGTGG
>site_13
AGGCTGTCAGGCT
>site_14
TTGCTGTCAGATG
>site_15
TAGGTGTCAGAAT
>site_16
GGGTTGTCAGATA
>site_17
TGACTGTCACGCG
>site_18
TACCTGTCATAGG
>site_19
CTCCTGTCAGCAC
>site_20
TTCCTGTCAGAAA
>site_21
GAGCTGACAGACG
>site_22
CGTCTGTCAGCTC
>site_23
CAGCTGTCAAAAC
>site_24
GGGCTGCCAGAAA
>site_25
AAGCTGTCACCGA
>site_26
CAGCTGTCACAAA
>site_27
AATGTGTCAGACT
>site_28
GTCCTGTCAGTTC
>site_29
TGGCTGTCAGTTG
>site_30
TTGCTGTCAGTTG
>site_31
TCACTGGCAGAGG
>site_32
CTGCTGTCAGTAC
>site_33
ACCCTGTCCGTGC
>site_34
GTACTGCCAGAGA
>site_35
CCGCTGTCAGATC
>site_36
GCCCTGTCAGGCC
>site_37
GGCCTGTCACAAT
>site_38
GTCCTGTCATACC
>site_39
CCGCTGTCAAAGC
>site_40
AGCCTGTCACGGA
>site_41
CCCCTGTCAACTC
>site_42
ACACAGTCAGAAT
>site_43
TGCCGGTCAGACT
>site_44
GGACTGTCAAAAA
>site_45
AGACTGTCAACGG
>site_46
ACCGTGTCAGAGC
>site_47
TGCCTGTCATGCA
>site_48
ACACTGTCAGGTT
>site_49
CGACTGTCAACGG
>site_50
GCGCTGTCAGCGT
>site_51
TACCTGTAAGTAT
>site_52
AAGCTGTCAAATT
>site_53
CGAGTGTCAGATT
>site_54
CAGCTGTCAGACT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m1_rc.png
;
a	11	18	3	3	56	0	3	5	0	4	12	11
c	17	13	44	60	2	59	2	1	1	13	21	25
g	25	21	13	1	1	2	59	2	60	44	13	17
t	11	12	4	0	5	3	0	56	3	3	18	11
//
; Sites	64
>site_0
TGGCACGTGGCG
>site_1
CGCCACGTGCCA
>site_2
GCCAACGTGGCA
>site_3
TGCCACGTTGGC
>site_4
GGGCACGTGGGG
>site_5
CCCCACGTGCCC
>site_6
CACCACGAGGAT
>site_7
ATCCTCGTGGTG
>site_8
TAGCACGTGCGG
>site_9
CCGCACGTGCTA
>site_10
GGCCACCTGGCC
>site_11
GGCCAGGTGGCC
>site_12
CGACACGTGCCG
>site_13
CGGCACGTGTCG
>site_14
CACCACGTGCAG
>site_15
CTGCACGTGGTG
>site_16
CGACACGTGCCG
>site_17
CGGCACGTGTCG
>site_18
GCCAACGTGGTC
>site_19
GACCACGTTGGC
>site_20
CGGCACGTGTAA
>site_21
TTACACGTGCCG
>site_22
CACAACGTGGGC
>site_23
GCCCACGTTGTG
>site_24
TACCATGTGGCG
>site_25
CGCCACATGGTA
>site_26
GTCCACGTGCTT
>site_27
AAGCACGTGGAC
>site_28
ACCCACGTGCAC
>site_29
GTGCACGTGGGT
>site_30
ATCCTCGTGGTC
>site_31
GACCACGAGGAT
>site_32
GGCCATGTGGAA
>site_33
TTCCACATGGCC
>site_34
GCTCACGTGGGA
>site_35
TCCCACGTGAGC
>site_36
CATCACGTGGAC
>site_37
GTCCACGTGATG
>site_38
ACGCACGTGGTC
>site_39
GACCACGTGCGT
>site_40
TGCCTCGTGGAG
>site_41
CTCCACGAGGCA
>site_42
AAGCACGTGGAC
>site_43
GTCCACGTGCTT
>site_44
ATCCCCGTGGGT
>site_45
ACCCACGGGGAT
>site_46
GGCCACGAGGGC
>site_47
GCCCTCGTGGCC
>site_48
TGGCACGTGGCC
>site_49
GGCCACGTGCCA
>site_50
TACCACGTCGGT
>site_51
ACCGACGTGGTA
>site_52
CGCCACGCGGCC
>site_53
GGCCGCGTGGCG
>site_54
TATCACGTGACC
>site_55
GGTCACGTGATA
>site_56
CTCCAGGTGGCT
>site_57
AGCCACCTGGAG
>site_58
AACCATGTGGGC
>site_59
GCCCACATGGTT
>site_60
GACCCCGTGGTC
>site_61
GACCACGGGGTC
>site_62
GACCACGAGGTC
>site_63
GACCTCGTGGTC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m2_rc.png
;
a	9	4	0	27	0	0	27	0	3	6
c	5	11	27	0	27	0	0	0	9	10
g	9	9	0	0	0	27	0	27	11	4
t	4	3	0	0	0	0	0	0	4	7
//
; Sites	27
>site_0
CGCACGAGAC
>site_1
CCCACGAGCC
>site_2
TCCACGAGCC
>site_3
ACCACGAGGA
>site_4
ACCACGAGTT
>site_5
GTCACGAGCT
>site_6
GTCACGAGTG
>site_7
CGCACGAGCT
>site_8
AGCACGAGCA
>site_9
GGCACGAGGG
>site_10
GCCACGAGCT
>site_11
GCCACGAGGC
>site_12
GACACGAGTC
>site_13
TGCACGAGGT
>site_14
AACACGAGGA
>site_15
ACCACGAGGA
>site_16
CGCACGAGCA
>site_17
AACACGAGAC
>site_18
CGCACGAGGT
>site_19
TCCACGAGGC
>site_20
ATCACGAGTG
>site_21
GCCACGAGGG
>site_22
TGCACGAGAC
>site_23
GGCACGAGCC
>site_24
GACACGAGGA
>site_25
ACCACGAGCC
>site_26
ACCACGAGGT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m3_rc.png
;
a	15	18	12	1	0	0	2	1	62	33	16	21
c	27	14	26	61	3	2	1	63	2	9	19	15
g	11	20	21	1	0	63	2	1	0	17	12	15
t	13	14	7	3	63	1	61	1	2	7	19	15
//
; Sites	66
>site_0
AGCCTCTCAACA
>site_1
AGTTTGTCAATA
>site_2
CGCCTGTCACTT
>site_3
TCCCTGTCATTG
>site_4
CCGCTGTCAAAT
>site_5
CATCTGTCATGA
>site_6
CAGCTGTCAGTG
>site_7
TTACTGCCAATA
>site_8
CAACTGTCAGTG
>site_9
CACCTGTCATCT
>site_10
ATCCCGTCAACA
>site_11
CAACTGTCAGCC
>site_12
GACCTGTCCATT
>site_13
CGGCTGTCATTC
>site_14
GATCTGTCTAAC
>site_15
AGCCTGACAAAA
>site_16
AGGCTGTCAGGC
>site_17
TTGCTGTCAGAT
>site_18
TATCTGACAACC
>site_19
TGACTGTCACGC
>site_20
TACCTGTCATAG
>site_21
CTCCTGTCAGCA
>site_22
TTCCTGTCAGAA
>site_23
CGTCTGTCAGCT
>site_24
TACCCGTCAATT
>site_25
CAGCTGTCAAAA
>site_26
CTCCTGTGAAGC
>site_27
CTACTGTCCACG
>site_28
AAGCTGTCACCG
>site_29
GCCGTGTCAATG
>site_30
CAGCTGTCACAA
>site_31
GTCCTGTCAGTT
>site_32
TGGCTGTCAGTT
>site_33
TTGCTGTCAGTT
>site_34
ATGCTGTCACGA
>site_35
ATTCTGTAAACA
>site_36
GAGCTGTCACCC
>site_37
CTGCTGTCAGTA
>site_38
CCGCTGTCAGAT
>site_39
GCCCTGTCAGGC
>site_40
GGCCTGTCACAA
>site_41
GTCCTGTCATAC
>site_42
CCGCTGTCTAGA
>site_43
CCGCTGTCAAAG
>site_44
AGCCTGTCACGG
>site_45
CCCCTGGCAATA
>site_46
CCCCTGTCAACT
>site_47
TCACTGTCACTG
>site_48
GGACTGTCAAAA
>site_49
AGACTGTCAACG
>site_50
TGCATGTCAATG
>site_51
GGCCTTTCAACC
>site_52
TGCCTGTCATGC
>site_53
ACACTGTCAGGT
>site_54
CGACTGTCAACG
>site_55
GCGCTGTCAGCG
>site_56
CCACTGTTAAGA
>site_57
ACGCTCTCAACC
>site_58
ATCCCGTCAACA
>site_59
AAGCTGTCAAAT
>site_60
AGTTTGTCAATA
>site_61
CGCCTGGCAAAC
>site_62
CAACTGTCAACA
>site_63
CAGCTGTCAGAC
>site_64
CAGCTGTCAATT
>site_65
CGCTTGTCAAGG
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m4_rc.png
;
a	10	2	30	0	0	1	0	30	10	8
c	4	4	1	31	10	0	0	0	11	9
g	7	4	0	0	20	29	0	0	3	8
t	10	21	0	0	1	1	31	1	7	6
//
; Sites	31
>site_0
CCACGGTAAC
>site_1
ATACTGTATA
>site_2
GTACCGTACG
>site_3
GTACGGTACC
>site_4
GCACGGTAAC
>site_5
ATACGGTAGA
>site_6
CTACCGTATC
>site_7
AGACGGTAGT
>site_8
TTACCGTATA
>site_9
ATACGGTAAA
>site_10
TTACCGTACA
>site_11
GTACGGTAAG
>site_12
TCCCGGTACG
>site_13
CCACGGTACG
>site_14
ATACGGTATG
>site_15
ATACCGTATT
>site_16
CAACGGTACC
>site_17
ATACGTTACA
>site_18
TGACGGTACG
>site_19
TTACGATACA
>site_20
TTACCGTAAG
>site_21
TTACGGTAAT
>site_22
ATACCGTAAC
>site_23
TTACGGTATT
>site_24
GTACGGTAAC
>site_25
TTACCGTACA
>site_26
GTACCGTATG
>site_27
ATACGGTACT
>site_28
GGACCGTAAC
>site_29
TAACGGTTAC
>site_30
AGACGGTAGT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121427_2025-08-17.121427_PAZ7BE/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m5_rc.png
;
; Host name	rsat
; Job started	2025-08-17.121436
; Job done	2025-08-17.121437
; Seconds	0.13
;	user	0.13
;	system	0.05
;	cuser	1.26
;	csystem	0.16
