; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	11	11	7	0	58	0	1	2	0	6	13	15
c	21	18	11	62	2	58	3	0	0	38	20	15
g	15	20	38	0	0	3	58	2	62	11	18	21
t	15	13	6	0	2	1	0	58	0	7	11	11
//
; Sites	62
>site_0
TGGCACGTGGCG
>site_1
CGCCACGTGCCA
>site_2
GGGCACGTGGGG
>site_3
CCCCACGTGCCC
>site_4
GGGCACGGGCTT
>site_5
AAGCCCGTGCCC
>site_6
TAGCACGTGCGG
>site_7
CCGCACGTGCTA
>site_8
ACACACGTGCTG
>site_9
CAGCACGTGTGT
>site_10
GTTCACGTGACA
>site_11
TGTCACGTGAAC
>site_12
CGACACGTGCCG
>site_13
CGGCACGTGTCG
>site_14
CAGCACGAGCAG
>site_15
CTGCTCGTGCTG
>site_16
CGACACGTGCCG
>site_17
CGGCACGTGTCG
>site_18
GAGCACGGGCGT
>site_19
ACGCCCGTGCTC
>site_20
TGCCACGTGATT
>site_21
AATCACGTGGCA
>site_22
CGGCACGTGTAA
>site_23
TTACACGTGCCG
>site_24
GCCCACGTGGAA
>site_25
TTCCACGTGGGC
>site_26
TCGCACGTGCTG
>site_27
CAGCACGTGCGA
>site_28
TGCCACGTGCGC
>site_29
GCGCACGTGGCA
>site_30
ACCCACGTGCAC
>site_31
GTGCACGTGGGT
>site_32
GTGCAGGTGCAG
>site_33
CTGCACCTGCAC
>site_34
CGTCACGTGTCA
>site_35
TGACACGTGACG
>site_36
TTGCTCGTGCGC
>site_37
GCGCACGAGCAA
>site_38
CCGCAGGTGCCA
>site_39
TGGCACCTGCGG
>site_40
CCGCACGTGCCA
>site_41
TGGCACGTGCGG
>site_42
CATCACGTGGAC
>site_43
GTCCACGTGATG
>site_44
ACGCACGTGTGG
>site_45
CCACACGTGCGT
>site_46
ACGCACGTGGTC
>site_47
GACCACGTGCGT
>site_48
GGTCACGTGTGC
>site_49
GCACACGTGACC
>site_50
TGGCACCTGCGC
>site_51
GCGCAGGTGCCA
>site_52
CTCCACGTGCAA
>site_53
TTGCACGTGGAG
>site_54
AAGCATGTGCCG
>site_55
CGGCACATGCTT
>site_56
ATCCACGTGCTT
>site_57
AAGCACGTGGAT
>site_58
CGGCACGTGCAT
>site_59
ATGCACGTGCCG
>site_60
TCGCACGTGCGC
>site_61
GCGCACGTGCGA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m1_rc.png
;
a	11	11	6	3	51	0	0	8	53	1	2	22	15
c	5	24	7	5	3	11	0	46	1	0	53	12	18
g	35	10	4	39	1	44	1	0	1	51	0	11	19
t	4	10	38	8	0	0	54	1	0	3	0	10	3
//
; Sites	55
>site_0
GAGCAGTCAGCAC
>site_1
AGTGAGGCAGCCC
>site_2
TGCGAGTTAGCGA
>site_3
AACGAGTCGGCCA
>site_4
GATGAGTCAGCAG
>site_5
GTACAGTCAGCCC
>site_6
GGAAAGTCAGCTC
>site_7
CTAGCGTCAGCAC
>site_8
GGTTAGTCAGCCG
>site_9
GCTGACTCAGCCG
>site_10
GCTGAGTCAGCAG
>site_11
GATGAGTCATCTG
>site_12
GCTGACTCAGCTC
>site_13
GCTGAGTCAGCAG
>site_14
TAGGAGTCATCCA
>site_15
ATTTAGTAAGCTA
>site_16
ATTTAGTAAGCTA
>site_17
GCTGAGTCAGCCA
>site_18
GCTGACTCAGCCA
>site_19
GATGAGTCAGCGA
>site_20
GCTGACTCAGCAA
>site_21
GCTGAGTCAGCAA
>site_22
ATTTAGTAAGCTA
>site_23
AGCGGGTCAGCCC
>site_24
GCTGACTCAGCTC
>site_25
GCTGAGTCAGCAG
>site_26
AATGAGTAAGCAT
>site_27
CGTTAGTCCGCAA
>site_28
GCTGAGTCAGCTG
>site_29
GCTGACTCAGCAG
>site_30
CCAGAGTAAGCTC
>site_31
GGAGAGTAAGCAG
>site_32
GCTGACTCAGCGC
>site_33
GCTGAGTCAGCAC
>site_34
TTCAAGTCAGCAG
>site_35
CAGCAGTCAGCGC
>site_36
GTGGAGTCAGCAG
>site_37
GCTGAGTCAGCCC
>site_38
GCTGACTCAGCTG
>site_39
AATGAGTCAGCGG
>site_40
GTTAAGTCATCGT
>site_41
GCTGCGTCAGCCA
>site_42
CTCTAGTCAGCAA
>site_43
GCTGAGTCAACCA
>site_44
GTTGACTCAGCAC
>site_45
AGCCAGTCAGCAG
>site_46
ACACAGTCAGCAG
>site_47
GATGCGTCAGCGG
>site_48
GCTGAGTAAGCGG
>site_49
GCTTACTCAGCGG
>site_50
AGTTAGTCAGCAT
>site_51
TCTGACTCAGCAC
>site_52
GCTGAGTCAGAGC
>site_53
GGTGAGTAAGCGC
>site_54
GACGAGTCAGAAC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m2_rc.png
;
a	19	9	1	52	0	0	45	1	2	18	11
c	7	24	51	4	55	3	3	3	7	13	22
g	21	16	3	1	1	53	4	52	45	17	13
t	10	8	2	0	1	1	5	1	3	9	11
//
; Sites	57
>site_0
GTCATGAGGGG
>site_1
GCCACGAGTGC
>site_2
GTCACGACGCG
>site_3
ACCACCAGGGT
>site_4
TCCACGAGCCC
>site_5
GGCACGTGGGG
>site_6
ACCACGAGGAT
>site_7
CTCCCGAGGCC
>site_8
CACCCGAGGGT
>site_9
GCCACCAGGGT
>site_10
AAGACGAGGTT
>site_11
ACCACGAGTTT
>site_12
AGCACGAGTGG
>site_13
ATGACGAGGGC
>site_14
AGCACGAGCAG
>site_15
GACACGAAGGA
>site_16
TCCCCGAGGGG
>site_17
GACAGGAGGAA
>site_18
TCCACGAGGGA
>site_19
GGCACGGGGAA
>site_20
GGCACGCGGAC
>site_21
TCCACGTGGGC
>site_22
CCCACGTGGAA
>site_23
GGTACGAGGCA
>site_24
TCCACGAGGAA
>site_25
GCCACGATGCC
>site_26
TGCACGAGGTC
>site_27
GGCACCAGGGG
>site_28
TGCACGCGGTA
>site_29
ACCACGGGGAG
>site_30
ACCACGAGGAT
>site_31
CGCACGAGCAA
>site_32
CACGCGAGGAC
>site_33
ACCACGACGAA
>site_34
AACACGAGACG
>site_35
ATCACGTGGAC
>site_36
CGCACGTGGTC
>site_37
CATACGAGGTC
>site_38
GTCACTAGGAC
>site_39
GCCACGGGGCT
>site_40
ACCACGAGCGC
>site_41
GCAACGAGGCC
>site_42
GCCACGACGAT
>site_43
AGCACGAGGAC
>site_44
GCCACGAGCAT
>site_45
TACACGAGGAC
>site_46
AACACGAGGGG
>site_47
GCCACGCGGCC
>site_48
TGCCCGAGGTG
>site_49
GTCACGAGACC
>site_50
GTCACGAGCGA
>site_51
ACCACGAGCCT
>site_52
ACCACGGGGTC
>site_53
TGCACGAGGCG
>site_54
ACCACGAGGTC
>site_55
AGCACGAGGCG
>site_56
GGGACGAGGGC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m3_rc.png
;
a	8	7	0	0	0	0	0	30	9	9
c	10	10	30	0	0	0	30	0	6	5
g	8	13	0	0	30	0	0	0	11	6
t	4	0	0	30	0	30	0	0	4	10
//
; Sites	30
>site_0
CACTGTCACG
>site_1
GCCTGTCACT
>site_2
CCCTGTCATT
>site_3
CGCTGTCAAA
>site_4
AGCTGTCAGT
>site_5
ACCTGTCATC
>site_6
GCCTGTCAGC
>site_7
GACTGTCAGT
>site_8
CGCTGTCATG
>site_9
TACTGTCAAA
>site_10
GACTGTCACG
>site_11
CCCTGTCATC
>site_12
TGCTGTCAGA
>site_13
TCCTGTCAGA
>site_14
AGCTGTCAAA
>site_15
GCCTGTCAGA
>site_16
AACTGTCAGT
>site_17
CGCTGTCAAT
>site_18
CCCTGTCAGG
>site_19
CGCTGTCAAA
>site_20
GCCTGTCACG
>site_21
AGCTGTCACT
>site_22
GGCTGTCAAT
>site_23
CACTGTCAGG
>site_24
GACTGTCAAC
>site_25
CGCTGTCAGC
>site_26
AGCTGTCAAA
>site_27
AGCTGTCAGA
>site_28
AGCTGTCAAT
>site_29
TCCTGTCACT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m4_rc.png
;
a	3	7	0	1	0	0	21	0	2	7
c	5	7	0	19	1	0	0	21	2	6
g	3	0	21	1	0	0	0	0	5	7
t	10	7	0	0	20	21	0	0	12	1
//
; Sites	21
>site_0
TCGCTTACAG
>site_1
TTGCTTACTG
>site_2
TAGCTTACTA
>site_3
TAGCTTACTA
>site_4
CCGATTACGG
>site_5
TAGCTTACTA
>site_6
ATGCTTACTG
>site_7
ACGCTTACCG
>site_8
ATGCTTACTC
>site_9
TTGCTTACGC
>site_10
GAGCTTACTC
>site_11
CTGCTTACTC
>site_12
TCGCTTACCA
>site_13
TAGCTTACAA
>site_14
GCGCTTACGG
>site_15
CTGCTTACGA
>site_16
TAGCCTACTA
>site_17
CCGCTTACTC
>site_18
TAGGTTACTG
>site_19
GCGCTTACTC
>site_20
CTGCTTACGT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m5_rc.png
;
; Host name	rsat
; Job started	2025-08-17.121509
; Job done	2025-08-17.121510
; Seconds	0.15
;	user	0.15
;	system	0.05
;	cuser	1.23
;	csystem	0.21
