/var/www/html/rsat/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/discovered_motifs/peak-motifs_motifs_disco_compa
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	html_index   	$RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	12	62
		file1	2	13	55
		file1	3	11	57
		file1	4	10	30
		file1	5	10	21
		file1	6	16	42
		file1	7	12	50
		file1	8	12	30
		file1	9	11	49
		file1	10	11	52
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2025/08/17/peak-motifs.2025-08-17.121501_2025-08-17.121501_7wfl8K/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		12		62
		file2		2		13		55
		file2		3		11		57
		file2		4		10		30
		file2		5		10		21
		file2		6		16		42
		file2		7		12		50
		file2		8		12		30
		file2		9		11		49
		file2		10		11		52
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 0.992 0.992 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 0.992 0.992 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m3 0.972 0.891 11 12 11 12 0.9167 1.0000 0.9167 D -1
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m3 0.972 0.891 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m5 0.967 0.879 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m4 0.967 0.879 10 11 10 11 0.9091 1.0000 0.9091 R 0
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 0.971 0.789 16 13 13 16 0.8125 0.8125 1.0000 D 2
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 0.971 0.789 13 16 13 16 0.8125 1.0000 0.8125 D -2
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m2 0.861 0.728 11 13 11 13 0.8462 1.0000 0.8462 D -2
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m4 0.861 0.728 13 11 11 13 0.8462 0.8462 1.0000 D 2
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m1 0.733 0.672 11 12 11 12 0.9167 1.0000 0.9167 D -1
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m3 0.733 0.672 12 11 11 12 0.9167 0.9167 1.0000 R 0
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m4 0.858 0.644 11 10 9 12 0.7500 0.8182 0.9000 R 2
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m5 0.858 0.644 10 11 9 12 0.7500 0.9000 0.8182 R 1
oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m2 0.700 0.642 11 12 11 12 0.9167 1.0000 0.9167 D -1
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m3 0.700 0.642 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m2 0.765 0.588 10 13 10 13 0.7692 1.0000 0.7692 R 0
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m5 0.765 0.588 13 10 10 13 0.7692 0.7692 1.0000 R 3
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m1 0.796 0.547 11 16 11 16 0.6875 1.0000 0.6875 D -4
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m4 0.796 0.547 16 11 11 16 0.6875 0.6875 1.0000 D 4
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m5 0.700 0.438 16 10 10 16 0.6250 0.6250 1.0000 R 5
oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m1 0.700 0.438 10 16 10 16 0.6250 1.0000 0.6250 R -1 
 Host name	rsat
 Job started	2025-08-17.121518
 Job done	2025-08-17.121524
 Seconds	0.24
	user	0.24
	system	0.16
	cuser	4.83
;	csystem	0.82