/var/www/html/rsat/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title test1 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	174
	Sum of sequence lengths      	87000
	Min sequence length          	0
	Max sequence length          	500
	Average sequence length      	500
	Possible positions           	86826
 Oligonucleotide statistics:
	Total occurrences    	81104
 Position interval parameters:
	Position interval    	20
	Number of windows    	26
	Total positions      	86826
	Degrees of freedom   	25
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-13	[-259,-240]	-249.5	174	1740
	2	-12	[-239,-220]	-229.5	174	3480
	3	-11	[-219,-200]	-209.5	174	3480
	4	-10	[-199,-180]	-189.5	174	3480
	5	-9	[-179,-160]	-169.5	174	3480
	6	-8	[-159,-140]	-149.5	174	3480
	7	-7	[-139,-120]	-129.5	174	3480
	8	-6	[-119,-100]	-109.5	174	3480
	9	-5	[-99,-80]	-89.5	174	3480
	10	-4	[-79,-60]	-69.5	174	3480
	11	-3	[-59,-40]	-49.5	174	3480
	12	-2	[-39,-20]	-29.5	174	3480
	13	-1	[-19,0]	-9.5	174	3480
	14	0	[1,20]	10.5	174	3480
	15	1	[21,40]	30.5	174	3480
	16	2	[41,60]	50.5	174	3480
	17	3	[61,80]	70.5	174	3480
	18	4	[81,100]	90.5	174	3480
	19	5	[101,120]	110.5	174	3480
	20	6	[121,140]	130.5	174	3480
	21	7	[141,160]	150.5	174	3480
	22	8	[161,180]	170.5	174	3480
	23	9	[181,200]	190.5	174	3480
	24	10	[201,220]	210.5	174	3480
	25	11	[221,240]	230.5	174	3480
	26	12	[241,260]	250.5	174	1566

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-249.5         	occurrences in window	1	[-259,-240]
	11	-229.5         	occurrences in window	2	[-239,-220]
	12	-209.5         	occurrences in window	3	[-219,-200]
	13	-189.5         	occurrences in window	4	[-199,-180]
	14	-169.5         	occurrences in window	5	[-179,-160]
	15	-149.5         	occurrences in window	6	[-159,-140]
	16	-129.5         	occurrences in window	7	[-139,-120]
	17	-109.5         	occurrences in window	8	[-119,-100]
	18	-89.5          	occurrences in window	9	[-99,-80]
	19	-69.5          	occurrences in window	10	[-79,-60]
	20	-49.5          	occurrences in window	11	[-59,-40]
	21	-29.5          	occurrences in window	12	[-39,-20]
	22	-9.5           	occurrences in window	13	[-19,0]
	23	10.5           	occurrences in window	14	[1,20]
	24	30.5           	occurrences in window	15	[21,40]
	25	50.5           	occurrences in window	16	[41,60]
	26	70.5           	occurrences in window	17	[61,80]
	27	90.5           	occurrences in window	18	[81,100]
	28	110.5          	occurrences in window	19	[101,120]
	29	130.5          	occurrences in window	20	[121,140]
	30	150.5          	occurrences in window	21	[141,160]
	31	170.5          	occurrences in window	22	[161,180]
	32	190.5          	occurrences in window	23	[181,200]
	33	210.5          	occurrences in window	24	[201,220]
	34	230.5          	occurrences in window	25	[221,240]
	35	250.5          	occurrences in window	26	[241,260]
seq id occ chi2 df Pval Eval sig rank -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5
tt tt 6915 64.2 25 2.7e-05 0.00043 3.37 1 121 267 281 272 294 300 337 278 269 293 292 256 258 288 250 261 293 294 257 243 273 223 242 326 303 144
ta ta 5036 54.0 25 6.6e-04 0.011 1.98 2 109 231 198 212 181 153 227 185 194 200 183 207 223 179 193 223 246 215 217 181 190 194 189 190 206 110
gg gg 4347 48.3 25 3.5e-03 0.055 1.26 3 99 155 223 202 192 193 154 182 168 168 175 145 165 165 163 159 153 176 159 181 186 195 187 157 177 68
aa aa 7188 46.9 25 5.1e-03 0.081 1.09 4 175 306 289 281 292 273 257 293 292 317 278 277 301 268 265 314 281 291 350 305 257 300 284 269 252 121
gt gt 4218 34.0 25 1.1e-01 1.7 -0.24 5 86 173 181 192 140 170 140 164 155 154 178 151 168 166 178 182 167 187 167 155 204 175 170 157 170 88
cc cc 4567 32.7 25 1.4e-01 2.2 -0.35 6 78 215 177 185 189 175 191 214 193 169 168 201 172 188 187 168 203 202 167 166 165 181 195 171 174 73
ca ca 4939 29.4 25 2.5e-01 4 -0.60 7 99 207 187 184 194 228 191 200 195 166 196 215 187 184 197 175 179 181 210 215 204 216 210 203 223 93
ga ga 5262 27.0 25 3.5e-01 5.7 -0.75 8 116 208 252 219 221 206 208 197 224 235 202 235 201 203 205 203 193 209 199 221 187 198 217 212 209 82
gc gc 4183 24.9 25 4.7e-01 7.5 -0.88 9 89 172 163 156 183 166 144 191 167 142 162 158 173 159 171 153 158 169 165 171 185 157 179 194 179 77
tc tc 5415 23.8 25 5.3e-01 8.5 -0.93 10 115 212 202 223 233 234 250 213 218 229 218 213 206 249 236 212 204 208 218 198 200 214 206 204 201 99
tg tg 4907 22.6 25 6.0e-01 9.6 -0.98 11 97 171 206 200 194 190 177 197 190 179 209 192 199 197 193 198 189 201 182 219 231 204 194 186 211 101
cg cg 3754 21.4 25 6.7e-01 11 -1.03 12 83 171 159 160 148 154 128 154 153 148 160 141 152 152 163 134 138 147 139 151 141 141 158 173 150 56
ct ct 5142 20.9 25 7.0e-01 11 -1.05 13 98 199 187 211 222 208 235 215 221 212 197 204 203 229 192 216 222 196 204 204 186 198 185 195 205 98
at at 5995 19.0 25 8.0e-01 13 -1.11 14 122 244 245 245 224 222 265 212 229 251 232 258 248 240 252 240 237 245 240 244 229 237 233 245 225 131
ag ag 4997 17.2 25 8.7e-01 14 -1.15 15 99 227 220 202 209 193 183 205 203 201 181 210 187 184 191 210 205 198 203 195 206 185 205 200 215 80
ac ac 4239 16.0 25 9.1e-01 15 -1.17 16 92 182 171 172 156 183 169 172 169 158 175 178 170 154 152 160 172 152 173 180 157 184 164 179 186 79 
 Host name	rsat
 Job started	2025-08-25.022156
 Job done	2025-08-25.022157
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