/var/www/html/rsat/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	html_index   	$RSAT/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/results/discovered_motifs/peak-motifs_motifs_disco_compa
	match_table_html	$RSAT/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	13	141
		file1	2	13	143
		file1	3	12	231
		file1	4	15	71
		file1	5	15	165
		file1	6	12	124
		file1	7	14	133
		file1	8	11	215
		file1	9	13	93
		file1	10	12	97
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		13		141
		file2		2		13		143
		file2		3		12		231
		file2		4		15		71
		file2		5		15		165
		file2		6		12		124
		file2		7		14		133
		file2		8		11		215
		file2		9		13		93
		file2		10		12		97
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 0.917 0.917 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 0.917 0.917 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m2 0.968 0.899 13 14 13 14 0.9286 1.0000 0.9286 D 0
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m2 0.968 0.899 14 13 13 14 0.9286 0.9286 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m4 0.976 0.837 13 13 12 14 0.8571 0.9231 0.9231 D -1
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m1 0.976 0.837 13 13 12 14 0.8571 0.9231 0.9231 D 1
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m5 0.808 0.692 14 12 12 14 0.8571 0.8571 1.0000 R 2
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m2 0.808 0.692 12 14 12 14 0.8571 1.0000 0.8571 R 0
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m4 0.857 0.686 12 15 12 15 0.8000 1.0000 0.8000 R -2
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m5 0.857 0.686 15 12 12 15 0.8000 0.8000 1.0000 R 1
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m1 0.837 0.670 15 12 12 15 0.8000 0.8000 1.0000 D 1
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m4 0.837 0.670 12 15 12 15 0.8000 1.0000 0.8000 R -2
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m4 0.804 0.643 12 15 12 15 0.8000 1.0000 0.8000 R 0
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m3 0.804 0.643 15 12 12 15 0.8000 0.8000 1.0000 R 3
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 0.711 0.609 12 14 12 14 0.8571 1.0000 0.8571 R 0
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 0.711 0.609 14 12 12 14 0.8571 0.8571 1.0000 D 2
oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m5 0.709 0.600 12 12 11 13 0.8462 0.9167 0.9167 D -1
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m3 0.709 0.600 12 12 11 13 0.8462 0.9167 0.9167 D 1
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m5 0.755 0.593 13 12 11 14 0.7857 0.8462 0.9167 D -1
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m2 0.755 0.593 12 13 11 14 0.7857 0.9167 0.8462 D 1
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 0.755 0.593 12 13 11 14 0.7857 0.9167 0.8462 D 1
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 0.755 0.593 13 12 11 14 0.7857 0.8462 0.9167 D -1
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m4 0.706 0.530 13 15 12 16 0.7500 0.9231 0.8000 R -3
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m2 0.706 0.530 15 13 12 16 0.7500 0.8000 0.9231 R -1 
 Host name	rsat
 Job started	2025-08-25.022217
 Job done	2025-08-25.022224
 Seconds	0.38
	user	0.38
	system	0.21
	cuser	5.03
;	csystem	1.02