One-to-n alignments

Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m5_shift2 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m5_shift2 (oligos_7nt_mkv2_m5)
; oligos_7nt_mkv2_m5; m=0 (reference); ncol1=12; shift=2; ncol=14; --sgCGCCGtCGsc ; Alignment reference a 0 0 17 20 2 3 0 0 1 5 6 6 20 11 c 0 0 27 23 92 2 82 94 0 10 83 3 34 43 g 0 0 35 31 1 90 8 1 96 18 3 86 25 24 t 0 0 18 23 2 2 7 2 0 64 5 2 18 19

oligos_7nt_mkv2_m5_shift2 (oligos_7nt_mkv2_m5)
; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m5; m=1/6; ncol2=12; w=0; offset=0; strand=D; shift=2; score= 1; --sgCGCCGtCGsc ; cor=; Ncor= a 0 0 17 20 2 3 0 0 1 5 6 6 20 11 c 0 0 27 23 92 2 82 94 0 10 83 3 34 43 g 0 0 35 31 1 90 8 1 96 18 3 86 25 24 t 0 0 18 23 2 2 7 2 0 64 5 2 18 19

oligos_7nt_mkv2_m1_shift2 (oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m1; m=2/6; ncol2=12; w=0; offset=0; strand=D; shift=2; score=0.916814; --ggCGCCGGCGcc ; cor=; Ncor= a 0 0 19 26 4 3 11 3 1 4 2 5 29 21 c 0 0 30 26 109 1 99 117 3 10 118 6 43 54 g 0 0 54 43 6 118 10 3 117 99 1 109 26 30 t 0 0 21 29 5 2 4 1 3 11 3 4 26 19

oligos_7nt_mkv2_m2_rc_shift2 (oligos_7nt_mkv2_m2_rc)
; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m2_rc; m=3/6; ncol2=14; w=0; offset=0; strand=R; shift=2; score=0.692471; --saCGTCGtCGGc ; cor=; Ncor= a 0 0 14 46 14 6 8 2 4 15 6 6 8 15 c 0 0 40 33 92 8 13 121 5 20 118 7 10 86 g 0 0 51 32 10 115 16 4 115 10 4 118 110 11 t 0 0 28 22 17 4 96 6 9 88 5 2 5 21

oligos_6nt_mkv2_m4_rc_shift0 (oligos_6nt_mkv2_m4_rc)
; oligos_7nt_mkv2_m5 versus oligos_6nt_mkv2_m4_rc; m=4/6; ncol2=15; w=-2; offset=-2; strand=R; shift=0; score=0.685794; cscaCGcCGCCGts ; cor=; Ncor= a 15 8 8 36 0 4 7 0 3 3 4 0 13 11 c 27 26 37 10 69 1 48 68 0 53 58 6 7 26 g 14 25 17 14 0 63 11 2 65 8 5 63 8 24 t 15 12 9 11 2 3 5 1 3 7 4 2 43 10

oligos_6nt_mkv2_m3_shift3 (oligos_6nt_mkv2_m3)
; oligos_7nt_mkv2_m5 versus oligos_6nt_mkv2_m3; m=5/6; ncol2=12; w=0; offset=1; strand=D; shift=3; score=0.599852; ---cbsCCGCCGCc ; cor=; Ncor= a 0 0 0 56 43 48 14 17 15 13 8 8 11 49 c 0 0 0 74 67 58 186 201 3 194 204 3 198 82 g 0 0 0 51 60 80 16 10 205 14 11 214 11 50 t 0 0 0 50 61 45 15 3 8 10 8 6 11 50

oligos_6nt_mkv2_m2_shift3 (oligos_6nt_mkv2_m2)
; oligos_7nt_mkv2_m5 versus oligos_6nt_mkv2_m2; m=6/6; ncol2=13; w=0; offset=1; strand=D; shift=3; score=0.593281; ---mcgCCGACGAc ; cor=; Ncor= a 0 0 0 46 31 21 9 3 3 105 6 1 116 15 c 0 0 0 39 50 12 100 131 5 13 131 4 8 97 g 0 0 0 31 27 92 13 3 130 15 2 136 11 20 t 0 0 0 27 35 18 21 6 5 10 4 2 8 11

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m3_shift1 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)
; oligos_6nt_mkv2_m3; m=0 (reference); ncol1=12; shift=1; ncol=13; -cbsCCGCCGCcs ; Alignment reference a 0 56 43 48 14 17 15 13 8 8 11 49 44 c 0 74 67 58 186 201 3 194 204 3 198 82 58 g 0 51 60 80 16 10 205 14 11 214 11 50 76 t 0 50 61 45 15 3 8 10 8 6 11 50 53

oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)
; oligos_6nt_mkv2_m3 versus oligos_6nt_mkv2_m3; m=1/3; ncol2=12; w=0; offset=0; strand=D; shift=1; score= 1; -cbsCCGCCGCcs ; cor=; Ncor= a 0 56 43 48 14 17 15 13 8 8 11 49 44 c 0 74 67 58 186 201 3 194 204 3 198 82 58 g 0 51 60 80 16 10 205 14 11 214 11 50 76 t 0 50 61 45 15 3 8 10 8 6 11 50 53

oligos_6nt_mkv2_m4_rc_shift1 (oligos_6nt_mkv2_m4_rc)
; oligos_6nt_mkv2_m3 versus oligos_6nt_mkv2_m4_rc; m=2/3; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.643134; -cscaCGcCGCCG ; cor=; Ncor= a 0 15 8 8 36 0 4 7 0 3 3 4 0 c 0 27 26 37 10 69 1 48 68 0 53 58 6 g 0 14 25 17 14 0 63 11 2 65 8 5 63 t 0 15 12 9 11 2 3 5 1 3 7 4 2

oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5)
; oligos_6nt_mkv2_m3 versus oligos_7nt_mkv2_m5; m=3/3; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.599852; sgCGCCGtCGsc- ; cor=; Ncor= a 17 20 2 3 0 0 1 5 6 6 20 11 0 c 27 23 92 2 82 94 0 10 83 3 34 43 0 g 35 31 1 90 8 1 96 18 3 86 25 24 0 t 18 23 2 2 7 2 0 64 5 2 18 19 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m1_shift2 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m1_shift2 (oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=12; shift=2; ncol=14; --ggCGCCGGCGcc ; Alignment reference a 0 0 19 26 4 3 11 3 1 4 2 5 29 21 c 0 0 30 26 109 1 99 117 3 10 118 6 43 54 g 0 0 54 43 6 118 10 3 117 99 1 109 26 30 t 0 0 21 29 5 2 4 1 3 11 3 4 26 19

oligos_7nt_mkv2_m1_shift2 (oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m1; m=1/5; ncol2=12; w=0; offset=0; strand=D; shift=2; score= 1; --ggCGCCGGCGcc ; cor=; Ncor= a 0 0 19 26 4 3 11 3 1 4 2 5 29 21 c 0 0 30 26 109 1 99 117 3 10 118 6 43 54 g 0 0 54 43 6 118 10 3 117 99 1 109 26 30 t 0 0 21 29 5 2 4 1 3 11 3 4 26 19

oligos_7nt_mkv2_m5_shift2 (oligos_7nt_mkv2_m5)
; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m5; m=2/5; ncol2=12; w=0; offset=0; strand=D; shift=2; score=0.916814; --sgCGCCGtCGsc ; cor=; Ncor= a 0 0 17 20 2 3 0 0 1 5 6 6 20 11 c 0 0 27 23 92 2 82 94 0 10 83 3 34 43 g 0 0 35 31 1 90 8 1 96 18 3 86 25 24 t 0 0 18 23 2 2 7 2 0 64 5 2 18 19

oligos_6nt_mkv2_m4_rc_shift0 (oligos_6nt_mkv2_m4_rc)
; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m4_rc; m=3/5; ncol2=15; w=-2; offset=-2; strand=R; shift=0; score=0.669901; cscaCGcCGCCGts ; cor=; Ncor= a 15 8 8 36 0 4 7 0 3 3 4 0 13 11 c 27 26 37 10 69 1 48 68 0 53 58 6 7 26 g 14 25 17 14 0 63 11 2 65 8 5 63 8 24 t 15 12 9 11 2 3 5 1 3 7 4 2 43 10

oligos_7nt_mkv2_m2_rc_shift2 (oligos_7nt_mkv2_m2_rc)
; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m2_rc; m=4/5; ncol2=14; w=0; offset=0; strand=R; shift=2; score=0.609078; --saCGTCGtCGGc ; cor=; Ncor= a 0 0 14 46 14 6 8 2 4 15 6 6 8 15 c 0 0 40 33 92 8 13 121 5 20 118 7 10 86 g 0 0 51 32 10 115 16 4 115 10 4 118 110 11 t 0 0 28 22 17 4 96 6 9 88 5 2 5 21

oligos_6nt_mkv2_m2_shift3 (oligos_6nt_mkv2_m2)
; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m2; m=5/5; ncol2=13; w=0; offset=1; strand=D; shift=3; score=0.592933; ---mcgCCGACGAc ; cor=; Ncor= a 0 0 0 46 31 21 9 3 3 105 6 1 116 15 c 0 0 0 39 50 12 100 131 5 13 131 4 8 97 g 0 0 0 31 27 92 13 3 130 15 2 136 11 20 t 0 0 0 27 35 18 21 6 5 10 4 2 8 11

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m2_shift3 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m2_shift3 (oligos_6nt_mkv2_m2)
; oligos_6nt_mkv2_m2; m=0 (reference); ncol1=13; shift=3; ncol=16; ---mcgCCGACGAcrt ; Alignment reference a 0 0 0 46 31 21 9 3 3 105 6 1 116 15 37 30 c 0 0 0 39 50 12 100 131 5 13 131 4 8 97 31 29 g 0 0 0 31 27 92 13 3 130 15 2 136 11 20 52 35 t 0 0 0 27 35 18 21 6 5 10 4 2 8 11 23 49

oligos_6nt_mkv2_m2_shift3 (oligos_6nt_mkv2_m2)
; oligos_6nt_mkv2_m2 versus oligos_6nt_mkv2_m2; m=1/5; ncol2=13; w=0; offset=0; strand=D; shift=3; score= 1; ---mcgCCGACGAcrt ; cor=; Ncor= a 0 0 0 46 31 21 9 3 3 105 6 1 116 15 37 30 c 0 0 0 39 50 12 100 131 5 13 131 4 8 97 31 29 g 0 0 0 31 27 92 13 3 130 15 2 136 11 20 52 35 t 0 0 0 27 35 18 21 6 5 10 4 2 8 11 23 49

oligos_7nt_mkv2_m2_shift3 (oligos_7nt_mkv2_m2)
; oligos_6nt_mkv2_m2 versus oligos_7nt_mkv2_m2; m=2/5; ncol2=14; w=0; offset=0; strand=D; shift=3; score=0.898911; ---mcgCCGaCGACGt ; cor=; Ncor= a 0 0 0 36 32 21 5 2 5 88 9 6 96 4 17 22 c 0 0 0 40 48 11 110 118 4 10 115 4 16 115 10 32 g 0 0 0 29 25 86 10 7 118 20 5 121 13 8 92 33 t 0 0 0 28 28 15 8 6 6 15 4 2 8 6 14 46

oligos_7nt_mkv2_m5_shift2 (oligos_7nt_mkv2_m5)
; oligos_6nt_mkv2_m2 versus oligos_7nt_mkv2_m5; m=3/5; ncol2=12; w=-1; offset=-1; strand=D; shift=2; score=0.593281; --sgCGCCGtCGsc-- ; cor=; Ncor= a 0 0 17 20 2 3 0 0 1 5 6 6 20 11 0 0 c 0 0 27 23 92 2 82 94 0 10 83 3 34 43 0 0 g 0 0 35 31 1 90 8 1 96 18 3 86 25 24 0 0 t 0 0 18 23 2 2 7 2 0 64 5 2 18 19 0 0

oligos_7nt_mkv2_m1_shift2 (oligos_7nt_mkv2_m1)
; oligos_6nt_mkv2_m2 versus oligos_7nt_mkv2_m1; m=4/5; ncol2=12; w=-1; offset=-1; strand=D; shift=2; score=0.592933; --ggCGCCGGCGcc-- ; cor=; Ncor= a 0 0 19 26 4 3 11 3 1 4 2 5 29 21 0 0 c 0 0 30 26 109 1 99 117 3 10 118 6 43 54 0 0 g 0 0 54 43 6 118 10 3 117 99 1 109 26 30 0 0 t 0 0 21 29 5 2 4 1 3 11 3 4 26 19 0 0

oligos_6nt_mkv2_m4_rc_shift0 (oligos_6nt_mkv2_m4_rc)
; oligos_6nt_mkv2_m2 versus oligos_6nt_mkv2_m4_rc; m=5/5; ncol2=15; w=-3; offset=-3; strand=R; shift=0; score=0.529578; cscaCGcCGCCGtss- ; cor=; Ncor= a 15 8 8 36 0 4 7 0 3 3 4 0 13 11 13 0 c 27 26 37 10 69 1 48 68 0 53 58 6 7 26 19 0 g 14 25 17 14 0 63 11 2 65 8 5 63 8 24 26 0 t 15 12 9 11 2 3 5 1 3 7 4 2 43 10 13 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m4_shift1 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m4_shift1 (oligos_6nt_mkv2_m4)
; oligos_6nt_mkv2_m4; m=0 (reference); ncol1=15; shift=1; ncol=16; -ssaCGGCGgCGtgsg ; Alignment reference a 0 13 10 43 2 4 7 3 1 5 3 2 11 9 12 15 c 0 26 24 8 63 5 8 65 2 11 63 0 14 17 25 14 g 0 19 26 7 6 58 53 0 68 48 1 69 10 37 26 27 t 0 13 11 13 0 4 3 3 0 7 4 0 36 8 8 15

oligos_6nt_mkv2_m4_shift1 (oligos_6nt_mkv2_m4)
; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m4; m=1/5; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -ssaCGGCGgCGtgsg ; cor=; Ncor= a 0 13 10 43 2 4 7 3 1 5 3 2 11 9 12 15 c 0 26 24 8 63 5 8 65 2 11 63 0 14 17 25 14 g 0 19 26 7 6 58 53 0 68 48 1 69 10 37 26 27 t 0 13 11 13 0 4 3 3 0 7 4 0 36 8 8 15

oligos_7nt_mkv2_m5_rc_shift2 (oligos_7nt_mkv2_m5_rc)
; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m5_rc; m=2/5; ncol2=12; w=0; offset=1; strand=R; shift=2; score=0.685794; --gsCGaCGGCGcs-- ; cor=; Ncor= a 0 0 19 18 2 5 64 0 2 7 2 2 23 18 0 0 c 0 0 24 25 86 3 18 96 1 8 90 1 31 35 0 0 g 0 0 43 34 3 83 10 0 94 82 2 92 23 27 0 0 t 0 0 11 20 6 6 5 1 0 0 3 2 20 17 0 0

oligos_7nt_mkv2_m1_shift2 (oligos_7nt_mkv2_m1)
; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m1; m=3/5; ncol2=12; w=0; offset=1; strand=D; shift=2; score=0.669901; --ggCGCCGGCGcc-- ; cor=; Ncor= a 0 0 19 26 4 3 11 3 1 4 2 5 29 21 0 0 c 0 0 30 26 109 1 99 117 3 10 118 6 43 54 0 0 g 0 0 54 43 6 118 10 3 117 99 1 109 26 30 0 0 t 0 0 21 29 5 2 4 1 3 11 3 4 26 19 0 0

oligos_6nt_mkv2_m3_rc_shift4 (oligos_6nt_mkv2_m3_rc)
; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m3_rc; m=4/5; ncol2=12; w=0; offset=3; strand=R; shift=4; score=0.643134; ----sgGCGGCGGsvg ; cor=; Ncor= a 0 0 0 0 53 50 11 6 8 10 8 3 15 45 61 50 c 0 0 0 0 76 50 11 214 11 14 205 10 16 80 60 51 g 0 0 0 0 58 82 198 3 204 194 3 201 186 58 67 74 t 0 0 0 0 44 49 11 8 8 13 15 17 14 48 43 56

oligos_6nt_mkv2_m2_rc_shift0 (oligos_6nt_mkv2_m2_rc)
; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m2_rc; m=5/5; ncol2=13; w=-1; offset=-1; strand=R; shift=0; score=0.529578; aygTCGTCGGcgk--- ; cor=; Ncor= a 49 23 11 8 2 4 10 5 6 21 18 35 27 0 0 0 c 35 52 20 11 136 2 15 130 3 13 92 27 31 0 0 0 g 29 31 97 8 4 131 13 5 131 100 12 50 39 0 0 0 t 30 37 15 116 1 6 105 3 3 9 21 31 46 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m4_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m4_shift0 (oligos_7nt_mkv2_m4)
; oligos_7nt_mkv2_m4; m=0 (reference); ncol1=13; shift=0; ncol=13; mkaGAGCAGCCrc ; Alignment reference a 28 21 40 5 88 2 1 84 6 1 8 29 21 c 33 19 19 12 1 4 87 3 0 83 71 21 31 g 17 24 23 65 3 84 4 1 86 6 4 29 20 t 15 29 11 11 1 3 1 5 1 3 10 14 21

oligos_7nt_mkv2_m4_shift0 (oligos_7nt_mkv2_m4)
; oligos_7nt_mkv2_m4 versus oligos_7nt_mkv2_m4; m=1/2; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; mkaGAGCAGCCrc ; cor=; Ncor= a 28 21 40 5 88 2 1 84 6 1 8 29 21 c 33 19 19 12 1 4 87 3 0 83 71 21 31 g 17 24 23 65 3 84 4 1 86 6 4 29 20 t 15 29 11 11 1 3 1 5 1 3 10 14 21

oligos_6nt_mkv2_m1_shift1 (oligos_6nt_mkv2_m1)
; oligos_7nt_mkv2_m4 versus oligos_6nt_mkv2_m1; m=2/2; ncol2=13; w=0; offset=1; strand=D; shift=1; score=0.836666; -kvGAGCAGCcgy ; cor=; Ncor= a 0 30 43 12 128 5 6 129 9 3 21 28 30 c 0 30 39 13 4 5 126 2 3 121 79 16 45 g 0 43 39 102 7 124 6 7 127 9 13 83 30 t 0 38 20 14 2 7 3 3 2 8 28 14 36

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m1_shift1 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m1_shift1 (oligos_6nt_mkv2_m1)
; oligos_6nt_mkv2_m1; m=0 (reference); ncol1=13; shift=1; ncol=14; -kvGAGCAGCcgya ; Alignment reference a 0 30 43 12 128 5 6 129 9 3 21 28 30 42 c 0 30 39 13 4 5 126 2 3 121 79 16 45 33 g 0 43 39 102 7 124 6 7 127 9 13 83 30 32 t 0 38 20 14 2 7 3 3 2 8 28 14 36 34

oligos_6nt_mkv2_m1_shift1 (oligos_6nt_mkv2_m1)
; oligos_6nt_mkv2_m1 versus oligos_6nt_mkv2_m1; m=1/2; ncol2=13; w=0; offset=0; strand=D; shift=1; score= 1; -kvGAGCAGCcgya ; cor=; Ncor= a 0 30 43 12 128 5 6 129 9 3 21 28 30 42 c 0 30 39 13 4 5 126 2 3 121 79 16 45 33 g 0 43 39 102 7 124 6 7 127 9 13 83 30 32 t 0 38 20 14 2 7 3 3 2 8 28 14 36 34

oligos_7nt_mkv2_m4_shift0 (oligos_7nt_mkv2_m4)
; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m4; m=2/2; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.836666; mkaGAGCAGCCrc- ; cor=; Ncor= a 28 21 40 5 88 2 1 84 6 1 8 29 21 0 c 33 19 19 12 1 4 87 3 0 83 71 21 31 0 g 17 24 23 65 3 84 4 1 86 6 4 29 20 0 t 15 29 11 11 1 3 1 5 1 3 10 14 21 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m3_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m3_shift0 (oligos_7nt_mkv2_m3)
; oligos_7nt_mkv2_m3; m=0 (reference); ncol1=11; shift=0; ncol=11; awAAAAGGAtw ; Alignment reference a 86 60 195 177 173 196 0 1 207 53 68 c 35 52 0 9 9 8 4 1 1 47 42 g 42 46 4 18 11 2 211 197 1 53 47 t 52 57 16 11 22 9 0 16 6 62 58

oligos_7nt_mkv2_m3_shift0 (oligos_7nt_mkv2_m3)
; oligos_7nt_mkv2_m3 versus oligos_7nt_mkv2_m3; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; awAAAAGGAtw ; cor=; Ncor= a 86 60 195 177 173 196 0 1 207 53 68 c 35 52 0 9 9 8 4 1 1 47 42 g 42 46 4 18 11 2 211 197 1 53 47 t 52 57 16 11 22 9 0 16 6 62 58

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m2_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)
; oligos_7nt_mkv2_m2; m=0 (reference); ncol1=14; shift=0; ncol=14; mcgCCGaCGACGts ; Alignment reference a 36 32 21 5 2 5 88 9 6 96 4 17 22 28 c 40 48 11 110 118 4 10 115 4 16 115 10 32 51 g 29 25 86 10 7 118 20 5 121 13 8 92 33 40 t 28 28 15 8 6 6 15 4 2 8 6 14 46 14

oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)
; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m2; m=1/4; ncol2=14; w=0; offset=0; strand=D; shift=0; score= 1; mcgCCGaCGACGts ; cor=; Ncor= a 36 32 21 5 2 5 88 9 6 96 4 17 22 28 c 40 48 11 110 118 4 10 115 4 16 115 10 32 51 g 29 25 86 10 7 118 20 5 121 13 8 92 33 40 t 28 28 15 8 6 6 15 4 2 8 6 14 46 14

oligos_6nt_mkv2_m2_shift0 (oligos_6nt_mkv2_m2)
; oligos_7nt_mkv2_m2 versus oligos_6nt_mkv2_m2; m=2/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.898911; mcgCCGACGAcrt- ; cor=; Ncor= a 46 31 21 9 3 3 105 6 1 116 15 37 30 0 c 39 50 12 100 131 5 13 131 4 8 97 31 29 0 g 31 27 92 13 3 130 15 2 136 11 20 52 35 0 t 27 35 18 21 6 5 10 4 2 8 11 23 49 0

oligos_7nt_mkv2_m5_rc_shift2 (oligos_7nt_mkv2_m5_rc)
; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m5_rc; m=3/4; ncol2=12; w=0; offset=2; strand=R; shift=2; score=0.692471; --gsCGaCGGCGcs ; cor=; Ncor= a 0 0 19 18 2 5 64 0 2 7 2 2 23 18 c 0 0 24 25 86 3 18 96 1 8 90 1 31 35 g 0 0 43 34 3 83 10 0 94 82 2 92 23 27 t 0 0 11 20 6 6 5 1 0 0 3 2 20 17

oligos_7nt_mkv2_m1_shift2 (oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m1; m=4/4; ncol2=12; w=0; offset=2; strand=D; shift=2; score=0.609078; --ggCGCCGGCGcc ; cor=; Ncor= a 0 0 19 26 4 3 11 3 1 4 2 5 29 21 c 0 0 30 26 109 1 99 117 3 10 118 6 43 54 g 0 0 54 43 6 118 10 3 117 99 1 109 26 30 t 0 0 21 29 5 2 4 1 3 11 3 4 26 19

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m5_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m5_shift0 (oligos_6nt_mkv2_m5)
; oligos_6nt_mkv2_m5; m=0 (reference); ncol1=15; shift=0; ncol=15; maaaAAGAAGAAAar ; Alignment reference a 59 68 95 105 129 132 19 146 151 16 148 142 146 67 54 c 42 35 23 13 8 13 8 3 5 3 4 3 4 24 24 g 36 28 29 28 16 12 130 11 3 143 4 8 11 34 46 t 28 34 18 19 12 8 8 5 6 3 9 12 4 40 41

oligos_6nt_mkv2_m5_shift0 (oligos_6nt_mkv2_m5)
; oligos_6nt_mkv2_m5 versus oligos_6nt_mkv2_m5; m=1/1; ncol2=15; w=0; offset=0; strand=D; shift=0; score= 1; maaaAAGAAGAAAar ; cor=; Ncor= a 59 68 95 105 129 132 19 146 151 16 148 142 146 67 54 c 42 35 23 13 8 13 8 3 5 3 4 3 4 24 24 g 36 28 29 28 16 12 130 11 3 143 4 8 11 34 46 t 28 34 18 19 12 8 8 5 6 3 9 12 4 40 41

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m5_shift2 (oligos_7nt_mkv2_m5)				; oligos_7nt_mkv2_m5; m=0 (reference); ncol1=12; shift=2; ncol=14; --sgCGCCGtCGsc ; Alignment reference a 0 0 17 20 2 3 0 0 1 5 6 6 20 11 c 0 0 27 23 92 2 82 94 0 10 83 3 34 43 g 0 0 35 31 1 90 8 1 96 18 3 86 25 24 t 0 0 18 23 2 2 7 2 0 64 5 2 18 19
oligos_7nt_mkv2_m5_shift2 (oligos_7nt_mkv2_m5)				; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m5; m=1/6; ncol2=12; w=0; offset=0; strand=D; shift=2; score= 1; --sgCGCCGtCGsc ; cor=; Ncor= a 0 0 17 20 2 3 0 0 1 5 6 6 20 11 c 0 0 27 23 92 2 82 94 0 10 83 3 34 43 g 0 0 35 31 1 90 8 1 96 18 3 86 25 24 t 0 0 18 23 2 2 7 2 0 64 5 2 18 19
oligos_7nt_mkv2_m1_shift2 (oligos_7nt_mkv2_m1)				; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m1; m=2/6; ncol2=12; w=0; offset=0; strand=D; shift=2; score=0.916814; --ggCGCCGGCGcc ; cor=; Ncor= a 0 0 19 26 4 3 11 3 1 4 2 5 29 21 c 0 0 30 26 109 1 99 117 3 10 118 6 43 54 g 0 0 54 43 6 118 10 3 117 99 1 109 26 30 t 0 0 21 29 5 2 4 1 3 11 3 4 26 19
oligos_7nt_mkv2_m2_rc_shift2 (oligos_7nt_mkv2_m2_rc)				; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m2_rc; m=3/6; ncol2=14; w=0; offset=0; strand=R; shift=2; score=0.692471; --saCGTCGtCGGc ; cor=; Ncor= a 0 0 14 46 14 6 8 2 4 15 6 6 8 15 c 0 0 40 33 92 8 13 121 5 20 118 7 10 86 g 0 0 51 32 10 115 16 4 115 10 4 118 110 11 t 0 0 28 22 17 4 96 6 9 88 5 2 5 21
oligos_6nt_mkv2_m4_rc_shift0 (oligos_6nt_mkv2_m4_rc)				; oligos_7nt_mkv2_m5 versus oligos_6nt_mkv2_m4_rc; m=4/6; ncol2=15; w=-2; offset=-2; strand=R; shift=0; score=0.685794; cscaCGcCGCCGts ; cor=; Ncor= a 15 8 8 36 0 4 7 0 3 3 4 0 13 11 c 27 26 37 10 69 1 48 68 0 53 58 6 7 26 g 14 25 17 14 0 63 11 2 65 8 5 63 8 24 t 15 12 9 11 2 3 5 1 3 7 4 2 43 10
oligos_6nt_mkv2_m3_shift3 (oligos_6nt_mkv2_m3)				; oligos_7nt_mkv2_m5 versus oligos_6nt_mkv2_m3; m=5/6; ncol2=12; w=0; offset=1; strand=D; shift=3; score=0.599852; ---cbsCCGCCGCc ; cor=; Ncor= a 0 0 0 56 43 48 14 17 15 13 8 8 11 49 c 0 0 0 74 67 58 186 201 3 194 204 3 198 82 g 0 0 0 51 60 80 16 10 205 14 11 214 11 50 t 0 0 0 50 61 45 15 3 8 10 8 6 11 50
oligos_6nt_mkv2_m2_shift3 (oligos_6nt_mkv2_m2)				; oligos_7nt_mkv2_m5 versus oligos_6nt_mkv2_m2; m=6/6; ncol2=13; w=0; offset=1; strand=D; shift=3; score=0.593281; ---mcgCCGACGAc ; cor=; Ncor= a 0 0 0 46 31 21 9 3 3 105 6 1 116 15 c 0 0 0 39 50 12 100 131 5 13 131 4 8 97 g 0 0 0 31 27 92 13 3 130 15 2 136 11 20 t 0 0 0 27 35 18 21 6 5 10 4 2 8 11

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)				; oligos_6nt_mkv2_m3; m=0 (reference); ncol1=12; shift=1; ncol=13; -cbsCCGCCGCcs ; Alignment reference a 0 56 43 48 14 17 15 13 8 8 11 49 44 c 0 74 67 58 186 201 3 194 204 3 198 82 58 g 0 51 60 80 16 10 205 14 11 214 11 50 76 t 0 50 61 45 15 3 8 10 8 6 11 50 53
oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)				; oligos_6nt_mkv2_m3 versus oligos_6nt_mkv2_m3; m=1/3; ncol2=12; w=0; offset=0; strand=D; shift=1; score= 1; -cbsCCGCCGCcs ; cor=; Ncor= a 0 56 43 48 14 17 15 13 8 8 11 49 44 c 0 74 67 58 186 201 3 194 204 3 198 82 58 g 0 51 60 80 16 10 205 14 11 214 11 50 76 t 0 50 61 45 15 3 8 10 8 6 11 50 53
oligos_6nt_mkv2_m4_rc_shift1 (oligos_6nt_mkv2_m4_rc)				; oligos_6nt_mkv2_m3 versus oligos_6nt_mkv2_m4_rc; m=2/3; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.643134; -cscaCGcCGCCG ; cor=; Ncor= a 0 15 8 8 36 0 4 7 0 3 3 4 0 c 0 27 26 37 10 69 1 48 68 0 53 58 6 g 0 14 25 17 14 0 63 11 2 65 8 5 63 t 0 15 12 9 11 2 3 5 1 3 7 4 2
oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5)				; oligos_6nt_mkv2_m3 versus oligos_7nt_mkv2_m5; m=3/3; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.599852; sgCGCCGtCGsc- ; cor=; Ncor= a 17 20 2 3 0 0 1 5 6 6 20 11 0 c 27 23 92 2 82 94 0 10 83 3 34 43 0 g 35 31 1 90 8 1 96 18 3 86 25 24 0 t 18 23 2 2 7 2 0 64 5 2 18 19 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m1_shift2 (oligos_7nt_mkv2_m1)				; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=12; shift=2; ncol=14; --ggCGCCGGCGcc ; Alignment reference a 0 0 19 26 4 3 11 3 1 4 2 5 29 21 c 0 0 30 26 109 1 99 117 3 10 118 6 43 54 g 0 0 54 43 6 118 10 3 117 99 1 109 26 30 t 0 0 21 29 5 2 4 1 3 11 3 4 26 19
oligos_7nt_mkv2_m1_shift2 (oligos_7nt_mkv2_m1)				; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m1; m=1/5; ncol2=12; w=0; offset=0; strand=D; shift=2; score= 1; --ggCGCCGGCGcc ; cor=; Ncor= a 0 0 19 26 4 3 11 3 1 4 2 5 29 21 c 0 0 30 26 109 1 99 117 3 10 118 6 43 54 g 0 0 54 43 6 118 10 3 117 99 1 109 26 30 t 0 0 21 29 5 2 4 1 3 11 3 4 26 19
oligos_7nt_mkv2_m5_shift2 (oligos_7nt_mkv2_m5)				; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m5; m=2/5; ncol2=12; w=0; offset=0; strand=D; shift=2; score=0.916814; --sgCGCCGtCGsc ; cor=; Ncor= a 0 0 17 20 2 3 0 0 1 5 6 6 20 11 c 0 0 27 23 92 2 82 94 0 10 83 3 34 43 g 0 0 35 31 1 90 8 1 96 18 3 86 25 24 t 0 0 18 23 2 2 7 2 0 64 5 2 18 19
oligos_6nt_mkv2_m4_rc_shift0 (oligos_6nt_mkv2_m4_rc)				; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m4_rc; m=3/5; ncol2=15; w=-2; offset=-2; strand=R; shift=0; score=0.669901; cscaCGcCGCCGts ; cor=; Ncor= a 15 8 8 36 0 4 7 0 3 3 4 0 13 11 c 27 26 37 10 69 1 48 68 0 53 58 6 7 26 g 14 25 17 14 0 63 11 2 65 8 5 63 8 24 t 15 12 9 11 2 3 5 1 3 7 4 2 43 10
oligos_7nt_mkv2_m2_rc_shift2 (oligos_7nt_mkv2_m2_rc)				; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m2_rc; m=4/5; ncol2=14; w=0; offset=0; strand=R; shift=2; score=0.609078; --saCGTCGtCGGc ; cor=; Ncor= a 0 0 14 46 14 6 8 2 4 15 6 6 8 15 c 0 0 40 33 92 8 13 121 5 20 118 7 10 86 g 0 0 51 32 10 115 16 4 115 10 4 118 110 11 t 0 0 28 22 17 4 96 6 9 88 5 2 5 21
oligos_6nt_mkv2_m2_shift3 (oligos_6nt_mkv2_m2)				; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m2; m=5/5; ncol2=13; w=0; offset=1; strand=D; shift=3; score=0.592933; ---mcgCCGACGAc ; cor=; Ncor= a 0 0 0 46 31 21 9 3 3 105 6 1 116 15 c 0 0 0 39 50 12 100 131 5 13 131 4 8 97 g 0 0 0 31 27 92 13 3 130 15 2 136 11 20 t 0 0 0 27 35 18 21 6 5 10 4 2 8 11

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m2_shift3 (oligos_6nt_mkv2_m2)				; oligos_6nt_mkv2_m2; m=0 (reference); ncol1=13; shift=3; ncol=16; ---mcgCCGACGAcrt ; Alignment reference a 0 0 0 46 31 21 9 3 3 105 6 1 116 15 37 30 c 0 0 0 39 50 12 100 131 5 13 131 4 8 97 31 29 g 0 0 0 31 27 92 13 3 130 15 2 136 11 20 52 35 t 0 0 0 27 35 18 21 6 5 10 4 2 8 11 23 49
oligos_6nt_mkv2_m2_shift3 (oligos_6nt_mkv2_m2)				; oligos_6nt_mkv2_m2 versus oligos_6nt_mkv2_m2; m=1/5; ncol2=13; w=0; offset=0; strand=D; shift=3; score= 1; ---mcgCCGACGAcrt ; cor=; Ncor= a 0 0 0 46 31 21 9 3 3 105 6 1 116 15 37 30 c 0 0 0 39 50 12 100 131 5 13 131 4 8 97 31 29 g 0 0 0 31 27 92 13 3 130 15 2 136 11 20 52 35 t 0 0 0 27 35 18 21 6 5 10 4 2 8 11 23 49
oligos_7nt_mkv2_m2_shift3 (oligos_7nt_mkv2_m2)				; oligos_6nt_mkv2_m2 versus oligos_7nt_mkv2_m2; m=2/5; ncol2=14; w=0; offset=0; strand=D; shift=3; score=0.898911; ---mcgCCGaCGACGt ; cor=; Ncor= a 0 0 0 36 32 21 5 2 5 88 9 6 96 4 17 22 c 0 0 0 40 48 11 110 118 4 10 115 4 16 115 10 32 g 0 0 0 29 25 86 10 7 118 20 5 121 13 8 92 33 t 0 0 0 28 28 15 8 6 6 15 4 2 8 6 14 46
oligos_7nt_mkv2_m5_shift2 (oligos_7nt_mkv2_m5)				; oligos_6nt_mkv2_m2 versus oligos_7nt_mkv2_m5; m=3/5; ncol2=12; w=-1; offset=-1; strand=D; shift=2; score=0.593281; --sgCGCCGtCGsc-- ; cor=; Ncor= a 0 0 17 20 2 3 0 0 1 5 6 6 20 11 0 0 c 0 0 27 23 92 2 82 94 0 10 83 3 34 43 0 0 g 0 0 35 31 1 90 8 1 96 18 3 86 25 24 0 0 t 0 0 18 23 2 2 7 2 0 64 5 2 18 19 0 0
oligos_7nt_mkv2_m1_shift2 (oligos_7nt_mkv2_m1)				; oligos_6nt_mkv2_m2 versus oligos_7nt_mkv2_m1; m=4/5; ncol2=12; w=-1; offset=-1; strand=D; shift=2; score=0.592933; --ggCGCCGGCGcc-- ; cor=; Ncor= a 0 0 19 26 4 3 11 3 1 4 2 5 29 21 0 0 c 0 0 30 26 109 1 99 117 3 10 118 6 43 54 0 0 g 0 0 54 43 6 118 10 3 117 99 1 109 26 30 0 0 t 0 0 21 29 5 2 4 1 3 11 3 4 26 19 0 0
oligos_6nt_mkv2_m4_rc_shift0 (oligos_6nt_mkv2_m4_rc)				; oligos_6nt_mkv2_m2 versus oligos_6nt_mkv2_m4_rc; m=5/5; ncol2=15; w=-3; offset=-3; strand=R; shift=0; score=0.529578; cscaCGcCGCCGtss- ; cor=; Ncor= a 15 8 8 36 0 4 7 0 3 3 4 0 13 11 13 0 c 27 26 37 10 69 1 48 68 0 53 58 6 7 26 19 0 g 14 25 17 14 0 63 11 2 65 8 5 63 8 24 26 0 t 15 12 9 11 2 3 5 1 3 7 4 2 43 10 13 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m4_shift1 (oligos_6nt_mkv2_m4)				; oligos_6nt_mkv2_m4; m=0 (reference); ncol1=15; shift=1; ncol=16; -ssaCGGCGgCGtgsg ; Alignment reference a 0 13 10 43 2 4 7 3 1 5 3 2 11 9 12 15 c 0 26 24 8 63 5 8 65 2 11 63 0 14 17 25 14 g 0 19 26 7 6 58 53 0 68 48 1 69 10 37 26 27 t 0 13 11 13 0 4 3 3 0 7 4 0 36 8 8 15
oligos_6nt_mkv2_m4_shift1 (oligos_6nt_mkv2_m4)				; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m4; m=1/5; ncol2=15; w=0; offset=0; strand=D; shift=1; score= 1; -ssaCGGCGgCGtgsg ; cor=; Ncor= a 0 13 10 43 2 4 7 3 1 5 3 2 11 9 12 15 c 0 26 24 8 63 5 8 65 2 11 63 0 14 17 25 14 g 0 19 26 7 6 58 53 0 68 48 1 69 10 37 26 27 t 0 13 11 13 0 4 3 3 0 7 4 0 36 8 8 15
oligos_7nt_mkv2_m5_rc_shift2 (oligos_7nt_mkv2_m5_rc)				; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m5_rc; m=2/5; ncol2=12; w=0; offset=1; strand=R; shift=2; score=0.685794; --gsCGaCGGCGcs-- ; cor=; Ncor= a 0 0 19 18 2 5 64 0 2 7 2 2 23 18 0 0 c 0 0 24 25 86 3 18 96 1 8 90 1 31 35 0 0 g 0 0 43 34 3 83 10 0 94 82 2 92 23 27 0 0 t 0 0 11 20 6 6 5 1 0 0 3 2 20 17 0 0
oligos_7nt_mkv2_m1_shift2 (oligos_7nt_mkv2_m1)				; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m1; m=3/5; ncol2=12; w=0; offset=1; strand=D; shift=2; score=0.669901; --ggCGCCGGCGcc-- ; cor=; Ncor= a 0 0 19 26 4 3 11 3 1 4 2 5 29 21 0 0 c 0 0 30 26 109 1 99 117 3 10 118 6 43 54 0 0 g 0 0 54 43 6 118 10 3 117 99 1 109 26 30 0 0 t 0 0 21 29 5 2 4 1 3 11 3 4 26 19 0 0
oligos_6nt_mkv2_m3_rc_shift4 (oligos_6nt_mkv2_m3_rc)				; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m3_rc; m=4/5; ncol2=12; w=0; offset=3; strand=R; shift=4; score=0.643134; ----sgGCGGCGGsvg ; cor=; Ncor= a 0 0 0 0 53 50 11 6 8 10 8 3 15 45 61 50 c 0 0 0 0 76 50 11 214 11 14 205 10 16 80 60 51 g 0 0 0 0 58 82 198 3 204 194 3 201 186 58 67 74 t 0 0 0 0 44 49 11 8 8 13 15 17 14 48 43 56
oligos_6nt_mkv2_m2_rc_shift0 (oligos_6nt_mkv2_m2_rc)				; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m2_rc; m=5/5; ncol2=13; w=-1; offset=-1; strand=R; shift=0; score=0.529578; aygTCGTCGGcgk--- ; cor=; Ncor= a 49 23 11 8 2 4 10 5 6 21 18 35 27 0 0 0 c 35 52 20 11 136 2 15 130 3 13 92 27 31 0 0 0 g 29 31 97 8 4 131 13 5 131 100 12 50 39 0 0 0 t 30 37 15 116 1 6 105 3 3 9 21 31 46 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)				; oligos_7nt_mkv2_m2; m=0 (reference); ncol1=14; shift=0; ncol=14; mcgCCGaCGACGts ; Alignment reference a 36 32 21 5 2 5 88 9 6 96 4 17 22 28 c 40 48 11 110 118 4 10 115 4 16 115 10 32 51 g 29 25 86 10 7 118 20 5 121 13 8 92 33 40 t 28 28 15 8 6 6 15 4 2 8 6 14 46 14
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)				; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m2; m=1/4; ncol2=14; w=0; offset=0; strand=D; shift=0; score= 1; mcgCCGaCGACGts ; cor=; Ncor= a 36 32 21 5 2 5 88 9 6 96 4 17 22 28 c 40 48 11 110 118 4 10 115 4 16 115 10 32 51 g 29 25 86 10 7 118 20 5 121 13 8 92 33 40 t 28 28 15 8 6 6 15 4 2 8 6 14 46 14
oligos_6nt_mkv2_m2_shift0 (oligos_6nt_mkv2_m2)				; oligos_7nt_mkv2_m2 versus oligos_6nt_mkv2_m2; m=2/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score=0.898911; mcgCCGACGAcrt- ; cor=; Ncor= a 46 31 21 9 3 3 105 6 1 116 15 37 30 0 c 39 50 12 100 131 5 13 131 4 8 97 31 29 0 g 31 27 92 13 3 130 15 2 136 11 20 52 35 0 t 27 35 18 21 6 5 10 4 2 8 11 23 49 0
oligos_7nt_mkv2_m5_rc_shift2 (oligos_7nt_mkv2_m5_rc)				; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m5_rc; m=3/4; ncol2=12; w=0; offset=2; strand=R; shift=2; score=0.692471; --gsCGaCGGCGcs ; cor=; Ncor= a 0 0 19 18 2 5 64 0 2 7 2 2 23 18 c 0 0 24 25 86 3 18 96 1 8 90 1 31 35 g 0 0 43 34 3 83 10 0 94 82 2 92 23 27 t 0 0 11 20 6 6 5 1 0 0 3 2 20 17
oligos_7nt_mkv2_m1_shift2 (oligos_7nt_mkv2_m1)				; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m1; m=4/4; ncol2=12; w=0; offset=2; strand=D; shift=2; score=0.609078; --ggCGCCGGCGcc ; cor=; Ncor= a 0 0 19 26 4 3 11 3 1 4 2 5 29 21 c 0 0 30 26 109 1 99 117 3 10 118 6 43 54 g 0 0 54 43 6 118 10 3 117 99 1 109 26 30 t 0 0 21 29 5 2 4 1 3 11 3 4 26 19