RSAT - peak-motifs result

Analysis: test1 (25/08/2025 02:22)

peak-motifs  -v 1 -title test1 -i $RSAT/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions,local_words -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: gagcagccg (sig=5.28; e-value=5.2e-06) RC: cggctgctc oligos_6nt_mkv2_m2 assembly: gccgacgac (sig=4.58; e-value=2.6e-05) RC: gtcgtcggc oligos_6nt_mkv2_m3 assembly: gccgccgc (sig=2.68; e-value=0.0021) RC: gcggcggc oligos_6nt_mkv2_m4 assembly: acggcggcgtg (sig=2.68; e-value=0.0021) RC: cacgccgccgt oligos_6nt_mkv2_m5 assembly: aaaagaagaaa (sig=2.34; e-value=0.0046) RC: tttcttctttt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_6nt	Not a single significant pattern	[local_words_6nt]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: cgccggcg (sig=4.40; e-value=4e-05) RC: cgccggcg oligos_7nt_mkv2_m2 assembly: gccgacgacg (sig=3.53; e-value=0.0003) RC: cgtcgtcggc oligos_7nt_mkv2_m3 assembly: aaaagga (sig=3.39; e-value=0.00041) RC: tcctttt oligos_7nt_mkv2_m4 assembly: agagcagcc (sig=2.41; e-value=0.0039) RC: ggctgctct oligos_7nt_mkv2_m5 assembly: cgccgtcg (sig=2.36; e-value=0.0044) RC: cgacggcg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_7nt	Not a single significant pattern	[local_words_7nt]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=5.28; evalue=5.2e-06 gvGAGCAGCcgcv BGCGGCTGCTCBC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 44 (25.29%) Max nb of predicted sites per peak: 3  (3:19740208-19740708(+)) Mean nb of predicted sites per peak: 1.20	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=4.58; evalue=2.6e-05 mcGCCGaCGACgk MCGTCGTCGGCGK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 33 (18.97%) Max nb of predicted sites per peak: 9  (10:12215623-12216123(+)) Mean nb of predicted sites per peak: 1.97	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=2.68; evalue=0.0021 cssCCGCCGCcs SGGCGGCGGSSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 23 (13.22%) Max nb of predicted sites per peak: 9  (10:12215623-12216123(+)) Mean nb of predicted sites per peak: 2.17	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=2.68; evalue=0.0021 ssaCGGCGGCGtssg CSSACGCCGCCGTSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 29 (16.67%) Max nb of predicted sites per peak: 15  (10:12215623-12216123(+)) Mean nb of predicted sites per peak: 3.66	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=2.34; evalue=0.0046 maaaAAGAAGAAAar YTTTTCTTCTTTTTK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 45 (25.86%) Max nb of predicted sites per peak: 3  (3:17610478-17610978(+)) Mean nb of predicted sites per peak: 1.40	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=4.40; evalue=4e-05 sgCGCCGGCGcs SGCGCCGGCGCS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 23 (13.22%) Max nb of predicted sites per peak: 14  (10:12215623-12216123(+)) Mean nb of predicted sites per peak: 4.26	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=3.53; evalue=0.0003 ccGCCGaCGaCGbs SVCGTCGTCGGCGG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 32 (18.39%) Max nb of predicted sites per peak: 9  (4:17867890-17868390(+)) Mean nb of predicted sites per peak: 2.78	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=3.39; evalue=0.00041 amAAAAGGAka TMTCCTTTTKT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 52 (29.89%) Max nb of predicted sites per peak: 3  (Mt:292435-292935(+)) Mean nb of predicted sites per peak: 1.21	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=2.41; evalue=0.0039 mkrGAGCAGCCrc GYGGCTGCTCYMK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 44 (25.29%) Max nb of predicted sites per peak: 3  (3:19740208-19740708(+)) Mean nb of predicted sites per peak: 1.23	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=2.36; evalue=0.0044 ssCGCCGtCGss SSCGACGGCGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 30 (17.24%) Max nb of predicted sites per peak: 18  (10:12215623-12216123(+)) Mean nb of predicted sites per peak: 3.27	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title test1 -i $RSAT/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions,local_words -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2

Warning: Not a single pattern was found in file tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/results/local_words_6nt/peak-motifs_local_words-2str-noov_6nt_windgroup50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/08/25/peak-motifs.2025-08-25.022153_2025-08-25.022153_iqyhV2/results/local_words_7nt/peak-motifs_local_words-2str-noov_7nt_windgroup50.tab