rsync -ruptl /var/www/html/rsat/perl-scripts/lib/js /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC
rsync -ruptl /var/www/html/rsat/public_html/images/program_icons/matrix-clustering_icons /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_query_matrices.transfac -from transfac -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_data/oct4_peak_motifs_input_motifs_processed_1.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_data/oct4_peak_motifs_input_motifs_processed_1.tf -from tf -to transfac -prefix_id oct4_peak_motifs -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_data/oct4_peak_motifs_input_motifs_processed.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_data/oct4_peak_motifs_input_motifs_processed.tf > /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_data/input_motifs_processed.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_data/input_motifs_processed.tf -split -from tf -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_data/motif
cat /var/www/html/rsat/R-scripts/matrix-clustering.R | /usr/bin/R --slave --no-save --no-restore --no-environ --args " infile = '/var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/pairwise_compa.tab'; hclust.method = 'average'; description.file = '/var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab'; distance.table = '/var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/distance_table.tab'; alignment.file = '/var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/alignment_table.tab'; verbosity = 0; metric = 'Ncor'; heatmap.color.palette = 'YlOrRd'; heatmap.color.classes = '9'; export.newick = 0; radial.only = 0; draw.heatmap = 1; draw.consensus = 0; pos.hclust.in.heatmap = 'column'; lthsp = 'Ncor_0.4_cor_0.6_'; out.prefix = '/var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering'; "
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/cluster_1_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_data/cluster_1_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/cluster_2_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_data/cluster_2_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/cluster_3_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_data/cluster_3_transfac_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/cluster_4_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_data/cluster_4_transfac_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m16_local_words_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m17_local_words_8nt_m2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m12_oligos_8nt_mkv6_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m13_oligos_8nt_mkv6_m2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m5_local_words_7nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m6_local_words_7nt_m2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m11_positions_7nt_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m21_positions_8nt_m3_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m15_oligos_8nt_mkv6_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m12_oligos_8nt_mkv6_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m13_oligos_8nt_mkv6_m2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m10_positions_7nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m5_local_words_7nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m6_local_words_7nt_m2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m14_oligos_8nt_mkv6_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m15_oligos_8nt_mkv6_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m12_oligos_8nt_mkv6_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m13_oligos_8nt_mkv6_m2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_cat.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/IC_test_2025-08-28.161047_Q5NLqR
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/IC_test_2025-08-28.161047_vShNMv
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/IC_test_2025-08-28.161047_wKkG4X
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/IC_test_2025-08-28.161047_6dj398
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/IC_test_2025-08-28.161047_UFvtZv
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/IC_test_2025-08-28.161047_02mmut
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/IC_test_2025-08-28.161047_Srb0ES
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_3/cluster_1_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m18_local_words_8nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m1_oligos_7nt_mkv5_m1_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m16_local_words_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m17_local_words_8nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m10_positions_7nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m5_local_words_7nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m6_local_words_7nt_m2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m19_positions_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m16_local_words_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m17_local_words_8nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m10_positions_7nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m5_local_words_7nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m6_local_words_7nt_m2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_cat.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/IC_test_2025-08-28.161048_G7Td9q
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/IC_test_2025-08-28.161048_4lisxS
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/IC_test_2025-08-28.161048_7kg20p
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_4/cluster_1_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_5/cluster_1_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_6/cluster_1_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cp /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m3_oligos_7nt_mkv5_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_4/cluster_4_matrices_temp.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m20_positions_8nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m9_positions_7nt_m1_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_node_8_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m7_local_words_7nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m18_local_words_8nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m1_oligos_7nt_mkv5_m1_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_node_7_cat.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_4/cluster_4_matrices_temp.tf -from tf -to tf -attr name cluster_4 -attr accession cluster_4 -set_attr merged_AC 'oct4_peak_motifs:::oligos_7nt_mkv5_m3' -set_attr merged_ID 'oligos_7nt_mkv5_m3' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_4/cluster_4_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_node_7_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_node_8_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/IC_test_2025-08-28.161049_VHKoCy
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_4/cluster_4_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/IC_test_2025-08-28.161049_tYiIxZ
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_7/cluster_1_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_8/cluster_1_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m22_positions_8nt_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m4_oligos_7nt_mkv5_m4_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_9/cluster_1_node_9_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m2_oligos_7nt_mkv5_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m7_local_words_7nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m18_local_words_8nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m1_oligos_7nt_mkv5_m1_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_node_10_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m8_local_words_7nt_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m19_positions_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m16_local_words_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m17_local_words_8nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m10_positions_7nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m5_local_words_7nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m6_local_words_7nt_m2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_node_11_cat.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_9/cluster_1_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_9/cluster_1_node_9_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_node_10_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_node_11_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_9/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/IC_test_2025-08-28.161050_nM8UvV
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/IC_test_2025-08-28.161050_IAtb92
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_nb_motifs_7.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/IC_test_2025-08-28.161050_GUfDy2
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_9/cluster_1_node_9_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_10/cluster_1_node_10_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_11/cluster_1_node_11_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m22_positions_8nt_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m4_oligos_7nt_mkv5_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m8_local_words_7nt_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m19_positions_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m16_local_words_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m17_local_words_8nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m10_positions_7nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m5_local_words_7nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m6_local_words_7nt_m2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_node_12_cat.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_node_12_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_nb_motifs_9.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/IC_test_2025-08-28.161051_XS8vLW
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_12/cluster_1_node_12_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m2_oligos_7nt_mkv5_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m7_local_words_7nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m18_local_words_8nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m1_oligos_7nt_mkv5_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m22_positions_8nt_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m4_oligos_7nt_mkv5_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m8_local_words_7nt_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m19_positions_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m16_local_words_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m17_local_words_8nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m10_positions_7nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m5_local_words_7nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m6_local_words_7nt_m2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_13/cluster_1_node_13_cat.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m20_positions_8nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m9_positions_7nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m2_oligos_7nt_mkv5_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m7_local_words_7nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m18_local_words_8nt_m3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m1_oligos_7nt_mkv5_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m22_positions_8nt_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m4_oligos_7nt_mkv5_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m8_local_words_7nt_m4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m19_positions_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m16_local_words_8nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m17_local_words_8nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m10_positions_7nt_m2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m5_local_words_7nt_m1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/oct4_peak_motifs_m6_local_words_7nt_m2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_14/cluster_1_node_14_cat.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_13/cluster_1_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_13/cluster_1_node_13_matrices.tf
/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_14/cluster_1_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_14/cluster_1_node_14_matrices.tf
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_13/cluster_1_nb_motifs_13.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/IC_test_2025-08-28.161052_Ls0Xlg
/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_14/cluster_1_nb_motifs_15.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/IC_test_2025-08-28.161052_cUAysm
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_13/cluster_1_node_13_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
cat /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_14/cluster_1_node_14_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
rm -r /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_pairwise_compa_logos
cp /var/www/html/rsat/public_html/templates_html/display_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_logo_tree.html
cp /var/www/html/rsat/public_html/templates_html/display_small_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_portable_logo_tree.html
mv /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_temporary.html /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_logo_tree.html
mv /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_portable_logo_tree.html
/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_html/pairwise_compa_matrix_descriptions.html
/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/distance_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/distance_table.html
/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/alignment_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/alignment_table.html
/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/clusters.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/clusters.html
/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/clusters_motif_names.tab -o /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/clusters_motif_names.html
mv -f /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_portable_logo_tree.html
; matrix-clustering -v 1 -max_matrices 300 -matrix oct4_peak_motifs $RSAT/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_query_matrices.transfac transfac -hclust_method average -calc sum -title oct4_motifs_found_in_chen_2008_peak_sets -metric_build_tree Ncor -lth w 5 -lth cor 0.6 -lth Ncor 0.4 -quick -label_in_tree name -return json,heatmap -o $RSAT/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering
; Program version 1.05
; Number of matrices 22
; Output files
; heatmap_coverage_attributes /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/convergency_heatmap_attributes.tab
; summary /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_SUMMARY.html
; coverage_table /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/clusters_summary_coverage_contingency_table.tab
; err_log /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_errors.txt
; nb_clusters_table /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/number_of_clusters.tab
; int_align /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/intermediate_alignments.tab
; prefix /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering
; distance_table_html /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/distance_table.html
; coverage_json_folder /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_coverage_json
; clusters_table /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/clusters.tab
; cluster_summary_table /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/clusters_summary_table.tab
; central_motifs /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_central_motifs_IDs.tab
; html_index /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_html/index.html
; logo_cladogram_html /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_logo_tree.html
; consensus_cladogram_json /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_trees/tree.json
; matrix_descriptions_html /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_html/pairwise_compa_matrix_descriptions.html
; dynamic_coverage_heatmap_html /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_dynamic_coverage_heatmap.html
; all_concatenated_motifs /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
; heatmap_pdf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_figures/heatmap.pdf
; distance_table /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/distance_table.tab
; temp_html_3 /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_temporary_3.html
; central_motifs_IDs_temp /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_central_motifs_IDs_temporal.tab
; clusters_table_motif_names /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/clusters_motif_names.tab
; radial_tree /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_radial_tree.html
; clusters_table_html /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/clusters.html
; heatmap_collections_attributes /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/collection_heatmap_order.tab
; reference_compa_html /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_html/Root_vs_reference_collection_compa.html
; hexa_colors /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_hexa_colors.txt
; heatmap_collections_d3 /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/collection_heatmap_tab.tsv
; clusters_table_motif_names_html /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/clusters_motif_names.html
; alignment_table /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/alignment_table.tab
; reference_compa /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/Root_vs_reference_collection_compa.tab
; alignment_table_html /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/alignment_table.html
; pairwise_compa_html /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_html/pairwise_compa.html
; input_matrices /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_data/input_motifs_processed.tf
; internal_nodes_attributes_table /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/internal_nodes_attributes.tab
; small_forest_export /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_small_forest.html
; Rlog /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_Rlog.txt
; small_logo_cladogram_html /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_portable_logo_tree.html
; root_motifs /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_cluster_root_motifs.tf
; archive /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_archive.zip
; motif_richness_tsv /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_motif_richness.tsv
; cluster_IDs_names /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_cluster_IDs.txt
; summary_temp /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_SUMMARY_TEMP.html
; temp_html /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_temporary.html
; dynamic_heatmap_html /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_dynamic_heatmap.html
; percent_table /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/clusters_summary_percent_table.tab
; motif_file /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_data/input_motifs_processed.tf
; log /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_log.txt
; root_motifs_table /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_root_motifs_table.tab
; heatmap_coverage_d3 /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/convergency_heatmap_tab.tsv
; matrix_descriptions /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab
; ref_collection_tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_reference_collection.tf
; radial_tree_template /var/www/html/rsat/public_html/templates_html/Radial_tree_template.html
; pairwise_compa /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_tables/pairwise_compa.tab
; central_motifs_tf /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_central_motifs_transfac.tf
; temp_html_2 /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_temporary_2.html
; motif_richness_barplot_html /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_motif_richness_barplot.html
; heatmap_jpg /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_figures/heatmap.jpg
; Directories
; output /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC
; data /var/www/html/rsat/public_html/tmp/www-data/2025/08/28/matrix-clustering_2025-08-28.161038_xYDMxC/matrix-clustering_data
; Host name rsat
; Job started 2025-08-28.161038
; Job done 2025-08-28.161056
; Seconds 0.71
; user 0.71
; system 0.3
; cuser 27.47
; csystem 5.93