; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2025/09/02/oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/09/02/oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/09/02/oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2025/09/02/oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2025/09/02/oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 44 15 10 103 19 1 103 5 4 106 81 7 51 56
c 23 17 102 0 6 120 7 0 116 6 3 95 23 22
g 17 60 0 4 94 0 3 107 0 1 30 14 16 32
t 39 31 11 16 4 2 10 11 3 10 9 7 33 13
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m1_rc.png
;
a 3 6 1 8 3 3 2 1 2 6 0 1 3 2 0 3 0 0 7 0 0 9 1 0 5 3 1 5
c 0 0 5 0 1 5 5 5 2 2 1 9 0 0 9 0 0 11 0 0 11 0 0 10 2 1 8 0
g 2 4 1 1 5 2 1 3 2 0 8 0 0 9 0 2 11 0 0 11 0 0 9 1 0 7 1 2
t 6 1 4 2 2 1 3 2 5 3 2 1 8 0 2 6 0 0 4 0 0 2 1 0 4 0 1 4
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m2_rc.png
;
a 2 9 0 32 32 0 0 0 14 10
c 6 12 32 0 0 32 32 0 9 9
g 11 3 0 0 0 0 0 32 4 9
t 13 8 0 0 0 0 0 0 5 4
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m3_rc.png
;
a 4 6 2 8 4 3 2 1 2 6 0 1 3 2 0 3 0 0 7 0 0 9 1 0 5 3 2 5
c 0 0 5 0 1 6 5 6 3 2 1 9 0 0 10 0 0 12 0 0 12 0 0 11 2 1 8 0
g 2 5 1 1 5 2 2 3 2 0 9 0 0 10 0 2 12 0 0 12 0 0 10 1 0 8 1 3
t 6 1 4 3 2 1 3 2 5 4 2 2 9 0 2 7 0 0 5 0 0 3 1 0 5 0 1 4
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m4_rc.png
;
a 15 4 0 0 0 0 0 0 17 12
c 5 14 35 0 0 0 0 35 9 4
g 7 5 0 35 35 0 0 0 6 9
t 8 12 0 0 0 35 35 0 3 10
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m5_rc.png
;
a 9 32 13 15 26 3 1 61 2 1 66 7 0 40 28 11 30
c 33 7 20 43 4 0 77 2 0 77 4 0 79 24 6 46 10
g 7 10 34 6 6 71 0 0 76 1 2 63 0 0 38 10 14
t 30 30 12 15 43 5 1 16 1 0 7 9 0 15 7 12 25
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m6_rc.png
;
a 7 20 0 0 0 44 44 0 14 13
c 12 2 0 0 44 0 0 44 4 9
g 11 14 44 0 0 0 0 0 10 13
t 14 8 0 44 0 0 0 0 16 9
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m7_rc.png
;
a 9 7 0 35 35 0 35 0 5 13
c 9 11 35 0 0 35 0 0 13 3
g 4 5 0 0 0 0 0 35 6 5
t 13 12 0 0 0 0 0 0 11 14
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m8_rc.png
;
a 15 12 51 0 3 4 0 0 9 0 15 22
c 30 22 3 3 60 0 4 69 1 2 14 14
g 3 20 9 54 6 0 2 0 0 1 16 13
t 21 15 6 12 0 65 63 0 59 66 24 20
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m9_rc.png
;
a 12 4 0 35 35 0 0 0 11 6
c 9 10 35 0 0 35 0 0 8 2
g 11 11 0 0 0 0 0 35 9 5
t 3 10 0 0 0 0 35 0 7 22
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m10_rc.png
;
a 14 7 0 0 45 0 0 45 19 5
c 16 4 0 45 0 45 45 0 5 14
g 2 11 0 0 0 0 0 0 7 14
t 13 23 45 0 0 0 0 0 14 12
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m11_rc.png
;
a 12 6 8 23 23 0 0 0 20 1 4 15 6
c 5 12 2 0 0 21 23 23 1 20 15 2 10
g 5 4 11 0 0 0 0 0 2 2 0 4 1
t 1 1 2 0 0 2 0 0 0 0 4 2 6
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m12.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m12_rc.png
;
a 4 2 1 5 0 1 2 0 0 3 0 0 7 0 0 7 3 1 3 3 2 1 1 2 4 4 1
c 3 1 5 0 1 9 0 0 11 0 0 11 0 0 11 0 0 9 0 3 3 3 2 5 1 0 6
g 1 6 2 0 10 0 0 11 0 0 11 0 0 11 0 0 7 1 1 5 3 3 6 1 2 5 2
t 3 2 3 6 0 1 9 0 0 8 0 0 4 0 0 4 1 0 7 0 3 4 2 3 4 2 2
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m13.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m13_rc.png
;
a 14 14 0 0 43 43 43 0 21 15
c 12 9 0 0 0 0 0 43 11 11
g 14 12 43 43 0 0 0 0 7 9
t 3 8 0 0 0 0 0 0 4 8
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m14.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m14_rc.png
;
a 3 3 0 0 0 0 0 0 8 7
c 7 7 18 0 0 18 0 18 2 0
g 2 7 0 18 18 0 0 0 6 7
t 6 1 0 0 0 0 18 0 2 4
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m15.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m15_rc.png
;
a 3 4 0 0 20 0 0 0 4 0
c 4 4 20 20 0 20 0 0 1 10
g 7 7 0 0 0 0 20 20 6 6
t 6 5 0 0 0 0 0 0 9 4
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m16.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m16_rc.png
;
a 14 4 11 10 5 9 18 0 1 9 4 2 8 0 0 23 1 0 26 11 0 16 10 9 10
c 6 1 13 5 14 8 2 3 22 0 0 26 0 0 34 2 0 33 0 0 30 8 5 15 10
g 1 19 5 13 9 7 2 29 0 1 30 0 4 34 0 0 28 1 0 22 4 0 16 5 4
t 13 10 5 6 6 10 12 2 11 24 0 6 22 0 0 9 5 0 8 1 0 10 3 5 10
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m17.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m17_rc.png
;
a 7 10 3 29 30 4 0 0 26 1 7 8
c 11 8 2 0 1 25 29 28 5 3 6 1
g 12 10 25 2 0 2 0 3 0 27 4 12
t 1 3 1 0 0 0 2 0 0 0 14 10
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m18.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m18_rc.png
;
a 7 18 0 0 40 40 0 40 17 5
c 22 8 0 40 0 0 0 0 5 4
g 2 1 40 0 0 0 40 0 15 19
t 9 13 0 0 0 0 0 0 3 12
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m19.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m19_rc.png
;
a 19 8 5 53 46 6 2 2 2 1 1 0 14 12
c 14 14 46 2 2 37 10 0 1 1 4 38 10 23
g 9 16 4 0 5 5 37 51 42 5 1 6 15 12
t 13 17 0 0 2 7 6 2 10 48 49 11 16 8
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m20.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/02//oligo-analysis_2025-09-02.152229_NeISj3_pssm_count_matrices_logo_m20_rc.png
;
; Host name rsat
; Job started 2025-09-02.152240
; Job done 2025-09-02.152246
; Seconds 0.27
; user 0.27
; system 0.17
; cuser 4.88
; csystem 0.81