compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/09/03/peak-motifs.2025-09-03.113949_2025-09-03.113949_eRwEjV/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/09/03/peak-motifs.2025-09-03.113949_2025-09-03.113949_eRwEjV/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab Program version 1.118 Quick mode Input files file1 $RSAT/public_html/tmp/www-data/2025/09/03/peak-motifs.2025-09-03.113949_2025-09-03.113949_eRwEjV/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 $RSAT/public_html/tmp/www-data/2025/09/03/peak-motifs.2025-09-03.113949_2025-09-03.113949_eRwEjV/results/discovered_motifs/peak-motifs_motifs_discovered.tf Output files html_index $RSAT/public_html/tmp/www-data/2025/09/03/peak-motifs.2025-09-03.113949_2025-09-03.113949_eRwEjV/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html alignments_1ton $RSAT/public_html/tmp/www-data/2025/09/03/peak-motifs.2025-09-03.113949_2025-09-03.113949_eRwEjV/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab match_table_html $RSAT/public_html/tmp/www-data/2025/09/03/peak-motifs.2025-09-03.113949_2025-09-03.113949_eRwEjV/results/discovered_motifs/peak-motifs_motifs_disco_compa.html alignments_1ton_html $RSAT/public_html/tmp/www-data/2025/09/03/peak-motifs.2025-09-03.113949_2025-09-03.113949_eRwEjV/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html prefix $RSAT/public_html/tmp/www-data/2025/09/03/peak-motifs.2025-09-03.113949_2025-09-03.113949_eRwEjV/results/discovered_motifs/peak-motifs_motifs_disco_compa match_table_txt $RSAT/public_html/tmp/www-data/2025/09/03/peak-motifs.2025-09-03.113949_2025-09-03.113949_eRwEjV/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab Matrices file1 14 matrices $RSAT/public_html/tmp/www-data/2025/09/03/peak-motifs.2025-09-03.113949_2025-09-03.113949_eRwEjV/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 1 16 172 file1 2 19 155 file1 3 16 161 file1 4 15 336 file1 5 15 214 file1 6 12 156 file1 7 10 172 file1 8 10 110 file1 9 24 85 file1 10 24 45 file1 11 18 343 ... 4 more matrices file2 14 matrices $RSAT/public_html/tmp/www-data/2025/09/03/peak-motifs.2025-09-03.113949_2025-09-03.113949_eRwEjV/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 1 16 172 file2 2 19 155 file2 3 16 161 file2 4 15 336 file2 5 15 214 file2 6 12 156 file2 7 10 172 file2 8 10 110 file2 9 24 85 file2 10 24 45 file2 11 18 343 ... 4 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_6nt_mkv1_m4 | oligos_6nt_mkv1_m4 | oligos_6nt_mkv1_m4 | oligos_6nt_mkv1_m4 | 1.000 | 1.000 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv1_m5 | oligos_7nt_mkv1_m5 | oligos_7nt_mkv1_m5 | oligos_7nt_mkv1_m5 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m3 | positions_6nt_m3 | positions_6nt_m3 | positions_6nt_m3 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv1_m1 | oligos_6nt_mkv1_m1 | oligos_6nt_mkv1_m1 | oligos_6nt_mkv1_m1 | 1.000 | 1.000 | 16 | 16 | 16 | 16 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv1_m1 | oligos_7nt_mkv1_m1 | oligos_7nt_mkv1_m1 | oligos_7nt_mkv1_m1 | 1.000 | 1.000 | 24 | 24 | 24 | 24 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv1_m5 | oligos_6nt_mkv1_m5 | oligos_6nt_mkv1_m5 | oligos_6nt_mkv1_m5 | 1.000 | 1.000 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m2 | positions_6nt_m2 | positions_6nt_m2 | positions_6nt_m2 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv1_m2 | oligos_6nt_mkv1_m2 | oligos_6nt_mkv1_m2 | oligos_6nt_mkv1_m2 | 1.000 | 1.000 | 19 | 19 | 19 | 19 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m1 | positions_6nt_m1 | positions_6nt_m1 | positions_6nt_m1 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv1_m2 | oligos_7nt_mkv1_m2 | oligos_7nt_mkv1_m2 | oligos_7nt_mkv1_m2 | 1.000 | 1.000 | 24 | 24 | 24 | 24 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv1_m3 | oligos_7nt_mkv1_m3 | oligos_7nt_mkv1_m3 | oligos_7nt_mkv1_m3 | 1.000 | 1.000 | 18 | 18 | 18 | 18 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv1_m3 | oligos_6nt_mkv1_m3 | oligos_6nt_mkv1_m3 | oligos_6nt_mkv1_m3 | 1.000 | 1.000 | 16 | 16 | 16 | 16 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv1_m4 | oligos_7nt_mkv1_m4 | oligos_7nt_mkv1_m4 | oligos_7nt_mkv1_m4 | 1.000 | 1.000 | 14 | 14 | 14 | 14 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_7nt_m1 | positions_7nt_m1 | positions_7nt_m1 | positions_7nt_m1 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv1_m3 | oligos_6nt_mkv1_m1 | oligos_6nt_mkv1_m3 | oligos_6nt_mkv1_m1 | 0.875 | 0.875 | 16 | 16 | 16 | 16 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv1_m1 | oligos_6nt_mkv1_m3 | oligos_6nt_mkv1_m1 | oligos_6nt_mkv1_m3 | 0.875 | 0.875 | 16 | 16 | 16 | 16 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv1_m5 | oligos_6nt_mkv1_m3 | oligos_6nt_mkv1_m5 | oligos_6nt_mkv1_m3 | 0.883 | 0.827 | 15 | 16 | 15 | 16 | 0.9375 | 1.0000 | 0.9375 | R | -1 |
| oligos_6nt_mkv1_m3 | oligos_6nt_mkv1_m5 | oligos_6nt_mkv1_m3 | oligos_6nt_mkv1_m5 | 0.883 | 0.827 | 16 | 15 | 15 | 16 | 0.9375 | 0.9375 | 1.0000 | R | 0 |
| oligos_6nt_mkv1_m4 | oligos_7nt_mkv1_m3 | oligos_6nt_mkv1_m4 | oligos_7nt_mkv1_m3 | 0.948 | 0.790 | 15 | 18 | 15 | 18 | 0.8333 | 1.0000 | 0.8333 | D | 0 |
| oligos_7nt_mkv1_m3 | oligos_6nt_mkv1_m4 | oligos_7nt_mkv1_m3 | oligos_6nt_mkv1_m4 | 0.948 | 0.790 | 18 | 15 | 15 | 18 | 0.8333 | 0.8333 | 1.0000 | D | 0 |
| positions_7nt_m1 | positions_6nt_m1 | positions_7nt_m1 | positions_6nt_m1 | 0.714 | 0.714 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m1 | positions_7nt_m1 | positions_6nt_m1 | positions_7nt_m1 | 0.714 | 0.714 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv1_m5 | oligos_6nt_mkv1_m1 | oligos_6nt_mkv1_m5 | oligos_6nt_mkv1_m1 | 0.736 | 0.690 | 15 | 16 | 15 | 16 | 0.9375 | 1.0000 | 0.9375 | R | -1 |
| oligos_6nt_mkv1_m1 | oligos_6nt_mkv1_m5 | oligos_6nt_mkv1_m1 | oligos_6nt_mkv1_m5 | 0.736 | 0.690 | 16 | 15 | 15 | 16 | 0.9375 | 0.9375 | 1.0000 | R | 0 |
| oligos_6nt_mkv1_m1 | oligos_7nt_mkv1_m2 | oligos_6nt_mkv1_m1 | oligos_7nt_mkv1_m2 | 0.881 | 0.587 | 16 | 24 | 16 | 24 | 0.6667 | 1.0000 | 0.6667 | R | -4 |
| oligos_7nt_mkv1_m2 | oligos_6nt_mkv1_m1 | oligos_7nt_mkv1_m2 | oligos_6nt_mkv1_m1 | 0.881 | 0.587 | 24 | 16 | 16 | 24 | 0.6667 | 0.6667 | 1.0000 | R | 4 |
| oligos_6nt_mkv1_m2 | oligos_7nt_mkv1_m1 | oligos_6nt_mkv1_m2 | oligos_7nt_mkv1_m1 | 0.736 | 0.583 | 19 | 24 | 19 | 24 | 0.7917 | 1.0000 | 0.7917 | R | -4 |
| oligos_7nt_mkv1_m1 | oligos_6nt_mkv1_m2 | oligos_7nt_mkv1_m1 | oligos_6nt_mkv1_m2 | 0.736 | 0.583 | 24 | 19 | 19 | 24 | 0.7917 | 0.7917 | 1.0000 | R | 1 |
| oligos_7nt_mkv1_m2 | oligos_6nt_mkv1_m3 | oligos_7nt_mkv1_m2 | oligos_6nt_mkv1_m3 | 0.858 | 0.572 | 24 | 16 | 16 | 24 | 0.6667 | 0.6667 | 1.0000 | D | 4 |
| oligos_6nt_mkv1_m3 | oligos_7nt_mkv1_m2 | oligos_6nt_mkv1_m3 | oligos_7nt_mkv1_m2 | 0.858 | 0.572 | 16 | 24 | 16 | 24 | 0.6667 | 1.0000 | 0.6667 | D | -4 |
| oligos_7nt_mkv1_m5 | oligos_6nt_mkv1_m2 | oligos_7nt_mkv1_m5 | oligos_6nt_mkv1_m2 | 0.837 | 0.529 | 12 | 19 | 12 | 19 | 0.6316 | 1.0000 | 0.6316 | D | -5 |
| oligos_6nt_mkv1_m2 | oligos_7nt_mkv1_m5 | oligos_6nt_mkv1_m2 | oligos_7nt_mkv1_m5 | 0.837 | 0.529 | 19 | 12 | 12 | 19 | 0.6316 | 0.6316 | 1.0000 | D | 5 |
| oligos_7nt_mkv1_m2 | oligos_6nt_mkv1_m5 | oligos_7nt_mkv1_m2 | oligos_6nt_mkv1_m5 | 0.738 | 0.462 | 24 | 15 | 15 | 24 | 0.6250 | 0.6250 | 1.0000 | D | 5 |
| oligos_6nt_mkv1_m5 | oligos_7nt_mkv1_m2 | oligos_6nt_mkv1_m5 | oligos_7nt_mkv1_m2 | 0.738 | 0.462 | 15 | 24 | 15 | 24 | 0.6250 | 1.0000 | 0.6250 | D | -5 |
| oligos_7nt_mkv1_m1 | oligos_7nt_mkv1_m5 | oligos_7nt_mkv1_m1 | oligos_7nt_mkv1_m5 | 0.857 | 0.429 | 24 | 12 | 12 | 24 | 0.5000 | 0.5000 | 1.0000 | D | 9 |
| oligos_7nt_mkv1_m5 | oligos_7nt_mkv1_m1 | oligos_7nt_mkv1_m5 | oligos_7nt_mkv1_m1 | 0.857 | 0.429 | 12 | 24 | 12 | 24 | 0.5000 | 1.0000 | 0.5000 | D | -9 |
Host name rsat Job started 2025-09-03.114023 Job done 2025-09-03.114031 Seconds 0.47 user 0.47 system 0.26 cuser 5.84 ; csystem 1.01