RSAT - peak-motifs result

Analysis: VE1_SIG_ (03/09/2025 11:47)

peak-motifs  -v 1 -title VE1_SIG_ -i $RSAT/public_html/tmp/www-data/2025/09/03/peak-motifs.2025-09-03.114614_2025-09-03.114614_RO9Adh/peak-motifspeak_seq -max_seq_len 1000 -min_markov 1 -max_markov 1 -disco oligos,positions -nmotifs 5 -minol 6 -maxol 8 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/09/03/peak-motifs.2025-09-03.114614_2025-09-03.114614_RO9Adh

motif discovery
oligos_6nt_mkv1	oligos_6nt_mkv1_m1 assembly: ttacata (sig=4.82; e-value=1.5e-05) RC: tatgtaa oligos_6nt_mkv1_m2 assembly: gtaccta (sig=2.55; e-value=0.0028) RC: taggtac oligos_6nt_mkv1_m3 assembly: gcttcc (sig=2.39; e-value=0.0041) RC: ggaagc oligos_6nt_mkv1_m4 assembly: catcca (sig=1.32; e-value=0.048) RC: tggatg oligos_6nt_mkv1_m5 assembly: cagcca (sig=1.31; e-value=0.049) RC: tggctg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv1	oligos_7nt_mkv1_m1 assembly: tacacta (sig=5.32; e-value=4.8e-06) RC: tagtgta oligos_7nt_mkv1_m2 assembly: tacctcta (sig=3.83; e-value=0.00015) RC: tagaggta oligos_7nt_mkv1_m3 assembly: gtacata (sig=3.27; e-value=0.00054) RC: tatgtac oligos_7nt_mkv1_m4 assembly: aaaaaaa (sig=3.22; e-value=0.0006) RC: ttttttt oligos_7nt_mkv1_m5 assembly: taccgta (sig=1.51; e-value=0.031) RC: tacggta	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]
oligos_8nt_mkv1	oligos_8nt_mkv1_m1 assembly: tacctcta (sig=10.74; e-value=1.8e-11) RC: tagaggta oligos_8nt_mkv1_m2 assembly: taaaaaaaa (sig=6.02; e-value=9.5e-07) RC: tttttttta oligos_8nt_mkv1_m3 assembly: gtagtgtag (sig=1.79; e-value=0.016) RC: ctacactac oligos_8nt_mkv1_m4 assembly: gtaaggtac (sig=1.56; e-value=0.028) RC: gtaccttac oligos_8nt_mkv1_m5 assembly: agcgagcg (sig=1.19; e-value=0.065) RC: cgctcgct	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_8nt	Not a single significant pattern	[positions_8nt]

Motif discovery
Motif 1   oligos_6nt_mkv1_m1	k-mer sig=4.82; evalue=1.5e-05 mdtTACATAsy RSTATGTAAHK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (32.08%) Max nb of predicted sites per peak: 2  (NC_026505.1:679206-680443) Mean nb of predicted sites per peak: 1.29	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv1_m2	k-mer sig=2.55; evalue=0.0028 mrGTACCTAth DATAGGTACYK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19 (35.85%) Max nb of predicted sites per peak: 3  (NC_026505.1:679206-680443) Mean nb of predicted sites per peak: 1.58	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv1_m3	k-mer sig=2.39; evalue=0.0041 yhGCTTCCvk MBGGAAGCDR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 27 (50.94%) Max nb of predicted sites per peak: 2  (NC_026507.1:2971847-2972410) Mean nb of predicted sites per peak: 1.26	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv1_m4	k-mer sig=1.32; evalue=0.048 tcCATCCAth DATGGATGGA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 21 (39.62%) Max nb of predicted sites per peak: 6  (NC_026505.1:2718394-2719158) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv1_m5	k-mer sig=1.31; evalue=0.049 gmCAGCCAgs SCTGGCTGKC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 21 (39.62%) Max nb of predicted sites per peak: 4  (NC_026503.1:5002056-5002669) Mean nb of predicted sites per peak: 1.57	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv1_m1	k-mer sig=5.32; evalue=4.8e-06 ayTACACTAym KRTAGTGTART	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 21 (39.62%) Max nb of predicted sites per peak: 10  (NC_026501.1:1313012-1313474) Mean nb of predicted sites per peak: 1.71	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv1_m2	k-mer sig=3.83; evalue=0.00015 ryTACCTCTAtw WATAGAGGTARY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 22 (41.51%) Max nb of predicted sites per peak: 2  (NC_026504.1:1837750-1838370) Mean nb of predicted sites per peak: 1.23	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv1_m3	k-mer sig=3.27; evalue=0.00054 ydGTACATAsy RSTATGTACHR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (37.74%) Max nb of predicted sites per peak: 3  (NC_026505.1:679206-680443) Mean nb of predicted sites per peak: 1.35	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv1_m4	k-mer sig=3.22; evalue=0.0006 aaAAAAAAAaa TTTTTTTTTTT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 13 (24.53%) Max nb of predicted sites per peak: 22  (NC_026503.1:4685576-4686279) Mean nb of predicted sites per peak: 8.08	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv1_m5	k-mer sig=1.51; evalue=0.031 ggTACcGTAyc GRTACGGTACC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 21 (39.62%) Max nb of predicted sites per peak: 4  (NC_026504.1:1837750-1838370) Mean nb of predicted sites per peak: 1.71	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   oligos_8nt_mkv1_m1	k-mer sig=10.74; evalue=1.8e-11 ryTACCTCTAtw WATAGAGGTARY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 22 (41.51%) Max nb of predicted sites per peak: 2  (NC_026504.1:1837750-1838370) Mean nb of predicted sites per peak: 1.23	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   oligos_8nt_mkv1_m2	k-mer sig=6.02; evalue=9.5e-07 aaAAAAAAAAAAa TTTTTTTTTTTTT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 16 (30.19%) Max nb of predicted sites per peak: 24  (NC_026503.1:4685576-4686279) Mean nb of predicted sites per peak: 8.06	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 13   oligos_8nt_mkv1_m3	k-mer sig=1.79; evalue=0.016 rkgTAgTGTAgtw WACTACACTACMY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 22 (41.51%) Max nb of predicted sites per peak: 10  (NC_026501.1:1313012-1313474) Mean nb of predicted sites per peak: 1.86	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 14   oligos_8nt_mkv1_m4	k-mer sig=1.56; evalue=0.028 wkGTAaGGTAcst ASGTACCTTACMW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19 (35.85%) Max nb of predicted sites per peak: 3  (NC_026504.1:1837750-1838370) Mean nb of predicted sites per peak: 1.47	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 15   oligos_8nt_mkv1_m5	k-mer sig=1.19; evalue=0.065 crAGCGAGCGrr YYCGCTCGCTYG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 18 (33.96%) Max nb of predicted sites per peak: 4  (NC_026503.1:3477371-3477982) Mean nb of predicted sites per peak: 1.28	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title VE1_SIG_ -i $RSAT/public_html/tmp/www-data/2025/09/03/peak-motifs.2025-09-03.114614_2025-09-03.114614_RO9Adh/peak-motifspeak_seq -max_seq_len 1000 -min_markov 1 -max_markov 1 -disco oligos,positions -nmotifs 5 -minol 6 -maxol 8 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/09/03/peak-motifs.2025-09-03.114614_2025-09-03.114614_RO9Adh

Warning: Not a single pattern was found in file tmp/www-data/2025/09/03/peak-motifs.2025-09-03.114614_2025-09-03.114614_RO9Adh/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/09/03/peak-motifs.2025-09-03.114614_2025-09-03.114614_RO9Adh/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/09/03/peak-motifs.2025-09-03.114614_2025-09-03.114614_RO9Adh/results/positions_8nt/peak-motifs_positions-2str-noov_8nt_ci50.tab