AC  assembly_1
XX
ID  assembly_1
XX
DE  aaacAGAGAGAcTww
P0           a         c         g         t
1          162        51        63        78
2          141        57        80        76
3          226        32        43        53
4           84       138        73        59
5          324         8        11        11
6           31        17       285        21
7          334         2         7        11
8           21         6       316        11
9          337         6         3         8
10          39        13       289        13
11         326         7        11        10
12          25       240        48        41
13          42        13        12       287
14          99        70        69       116
15         131        49        66       108
XX
CC  program: feature
CC  matrix.nb: 1
CC  matrix.nb: 1
CC  sites: 354
CC  consensus.strict: aaacAGAGAGAcTta
CC  consensus.strict.rc: TAAGTCTCTCTGTTT
CC  consensus.IUPAC: aaacAGAGAGAcTww
CC  consensus.IUPAC.rc: WWAGTCTCTCTGTTT
CC  consensus.regexp: aaacAGAGAGAcT[at][at]
CC  consensus.regexp.rc: [AT][AT]AGTCTCTCTGTTT
XX
//
AC  assembly_2
XX
ID  assembly_2
XX
DE  wwtTCAAGAAGAmaw
P0           a         c         g         t
1          168        58        88       160
2          162        75        97       140
3          103        38        71       262
4           35        19        27       393
5           54       336        52        32
6          446         6         4        18
7          434         7         8        25
8           46        22       386        20
9          439         7        14        14
10         431         6        15        22
11          62        20       365        27
12         431        12        12        19
13         138       194        52        90
14         206        63        88       117
15         207        74        67       126
XX
CC  program: feature
CC  matrix.nb: 2
CC  matrix.nb: 2
CC  sites: 474
CC  consensus.strict: aatTCAAGAAGAcaa
CC  consensus.strict.rc: TTGTCTTCTTGAATT
CC  consensus.IUPAC: wwtTCAAGAAGAmaw
CC  consensus.IUPAC.rc: WTKTCTTCTTGAAWW
CC  consensus.regexp: [at][at]tTCAAGAAGA[ac]a[at]
CC  consensus.regexp.rc: [AT]T[GT]TCTTCTTGAA[AT][AT]
XX
//
AC  assembly_3
XX
ID  assembly_3
XX
DE  wwamCAGAAGAcww
P0           a         c         g         t
1          158        83       106       132
2          174        86        87       132
3          251        47        72       109
4          137       168        76        98
5           74       356        30        19
6          455         4         6        14
7           50        17       397        15
8          464         3         8         4
9          453         3        15         8
10          44        13       407        15
11         448        11         5        15
12         101       275        42        61
13         187        64       105       123
14         194        83        71       131
XX
CC  program: feature
CC  matrix.nb: 3
CC  matrix.nb: 3
CC  sites: 479
CC  consensus.strict: aaacCAGAAGAcaa
CC  consensus.strict.rc: TTGTCTTCTGGTTT
CC  consensus.IUPAC: wwamCAGAAGAcww
CC  consensus.IUPAC.rc: WWGTCTTCTGKTWW
CC  consensus.regexp: [at][at]a[ac]CAGAAGAc[at][at]
CC  consensus.regexp.rc: [AT][AT]GTCTTCTG[GT]T[AT][AT]
XX
//
AC  assembly_4
XX
ID  assembly_4
XX
DE  wwAGCTTCTTGAAwh
P0           a         c         g         t
1           85        44        45        98
2           97        53        42        80
3          223         9        15        25
4           33         6       197        36
5           36       192        13        31
6           11         9         6       246
7            9         4         6       253
8           13       216        19        24
9           13        13        11       235
10          15        11         9       237
11          18        23       202        29
12         233        15        10        14
13         223        16        11        22
14          93        46        54        79
15          88        69        41        74
XX
CC  program: feature
CC  matrix.nb: 4
CC  matrix.nb: 4
CC  sites: 272
CC  consensus.strict: taAGCTTCTTGAAaa
CC  consensus.strict.rc: TTTTCAAGAAGCTTA
CC  consensus.IUPAC: wwAGCTTCTTGAAwh
CC  consensus.IUPAC.rc: DWTTCAAGAAGCTWW
CC  consensus.regexp: [at][at]AGCTTCTTGAA[at][act]
CC  consensus.regexp.rc: [AGT][AT]TTCAAGAAGCT[AT][AT]
XX
//
AC  assembly_5
XX
ID  assembly_5
XX
DE  waAgcAAGAAGAcwa
P0           a         c         g         t
1          106        31        58        68
2          104        40        64        55
3          203         5        16        39
4           45        18       173        27
5           42       178        28        15
6          249         4         4         6
7          242         7         6         8
8           21        11       225         6
9          251         5         4         3
10         242         7         9         5
11          30        10       212        11
12         241         8         7         7
13          62       148        24        29
14          96        41        56        70
15         126        33        41        63
XX
CC  program: feature
CC  matrix.nb: 5
CC  matrix.nb: 5
CC  sites: 263
CC  consensus.strict: aaAgcAAGAAGAcaa
CC  consensus.strict.rc: TTGTCTTCTTGCTTT
CC  consensus.IUPAC: waAgcAAGAAGAcwa
CC  consensus.IUPAC.rc: TWGTCTTCTTGCTTW
CC  consensus.regexp: [at]aAgcAAGAAGAc[at]a
CC  consensus.regexp.rc: T[AT]GTCTTCTTGCTT[AT]
XX
//
AC  assembly_6
XX
ID  assembly_6
XX
DE  wwTTcAAGAAGmAraw
P0           a         c         g         t
1          169        64        83       143
2          143        90        75       151
3           62        34        38       325
4           52        34        38       335
5           55       311        52        41
6          421        12         7        19
7          418         7        12        22
8           45        27       360        27
9          424        10        10        15
10         427         7         8        17
11          64        34       321        40
12         123       264        27        45
13         378        21        18        42
14         127        41       212        79
15         203        69        84       103
16         181        59        85       134
XX
CC  program: feature
CC  matrix.nb: 6
CC  matrix.nb: 6
CC  sites: 459
CC  consensus.strict: atTTcAAGAAGcAgaa
CC  consensus.strict.rc: TTCTGCTTCTTGAAAT
CC  consensus.IUPAC: wwTTcAAGAAGmAraw
CC  consensus.IUPAC.rc: WTYTKCTTCTTGAAWW
CC  consensus.regexp: [at][at]TTcAAGAAG[ac]A[ag]a[at]
CC  consensus.regexp.rc: [AT]T[CT]T[GT]CTTCTTGAA[AT][AT]
XX
//
AC  assembly_7
XX
ID  assembly_7
XX
DE  wtgTCTTCTCww
P0           a         c         g         t
1          140        94        76       215
2          125       100        64       236
3           41        46       345        93
4           11        12        14       488
5           16       467        10        32
6           19         5         9       492
7            6        14         5       500
8           13       478        11        23
9           15        16         5       489
10          16       441        12        56
11         137       130        54       204
12         145       110        71       199
XX
CC  program: feature
CC  matrix.nb: 7
CC  matrix.nb: 7
CC  sites: 525
CC  consensus.strict: ttgTCTTCTCtt
CC  consensus.strict.rc: AAGAGAAGACAA
CC  consensus.IUPAC: wtgTCTTCTCww
CC  consensus.IUPAC.rc: WWGAGAAGACAW
CC  consensus.regexp: [at]tgTCTTCTC[at][at]
CC  consensus.regexp.rc: [AT][AT]GAGAAGACA[AT]
XX
//
AC  assembly_8
XX
ID  assembly_8
XX
DE  waATGAGAww
P0           a         c         g         t
1          183        77        91       173
2          198       101       104       121
3          524         0         0         0
4            0         0         0       524
5            0         0       524         0
6          524         0         0         0
7            0         0       524         0
8          524         0         0         0
9          188        65       114       157
10         217        61        88       158
XX
CC  program: feature
CC  matrix.nb: 8
CC  matrix.nb: 8
CC  sites: 524
CC  consensus.strict: aaATGAGAaa
CC  consensus.strict.rc: TTTCTCATTT
CC  consensus.IUPAC: waATGAGAww
CC  consensus.IUPAC.rc: WWTCTCATTW
CC  consensus.regexp: [at]aATGAGA[at][at]
CC  consensus.regexp.rc: [AT][AT]TCTCATT[AT]
XX
//
AC  assembly_9
XX
ID  assembly_9
XX
DE  wwTTCAAGAAmww
P0           a         c         g         t
1          543       204       294       516
2          483       261       259       554
3          232       117       113      1095
4           89        50        46      1372
5          129      1216        82       130
6         1472        25        25        35
7         1453        25        26        53
8          192        99      1174        92
9         1440        37        27        53
10        1416        33        31        77
11         474       545       213       325
12         598       272       208       479
13         581       254       241       481
XX
CC  program: feature
CC  matrix.nb: 9
CC  matrix.nb: 9
CC  sites: 1557
CC  consensus.strict: atTTCAAGAAcaa
CC  consensus.strict.rc: TTGTTCTTGAAAT
CC  consensus.IUPAC: wwTTCAAGAAmww
CC  consensus.IUPAC.rc: WWKTTCTTGAAWW
CC  consensus.regexp: [at][at]TTCAAGAA[ac][at][at]
CC  consensus.regexp.rc: [AT][AT][GT]TTCTTGAA[AT][AT]
XX
//
AC  assembly_10
XX
ID  assembly_10
XX
DE  waAGCAACAww
P0           a         c         g         t
1          686       317       360       512
2          740       395       292       448
3         1701        36        51        87
4          230        86      1400       159
5          212      1508        60        95
6         1765        41        24        45
7         1732        30        50        63
8          215      1498        89        73
9         1730        39        41        65
10         756       320       282       517
11         730       342       314       489
XX
CC  program: feature
CC  matrix.nb: 10
CC  matrix.nb: 10
CC  sites: 1875
CC  consensus.strict: aaAGCAACAaa
CC  consensus.strict.rc: TTTGTTGCTTT
CC  consensus.IUPAC: waAGCAACAww
CC  consensus.IUPAC.rc: WWTGTTGCTTW
CC  consensus.regexp: [at]aAGCAACA[at][at]
CC  consensus.regexp.rc: [AT][AT]TGTTGCTT[AT]
XX
//
AC  assembly_11
XX
ID  assembly_11
XX
DE  rrCGGCGAkd
P0           a         c         g         t
1           27        10        23        16
2           21        16        21        18
3            0        76         0         0
4            0         0        76         0
5            0         0        76         0
6            0        76         0         0
7            0         0        76         0
8           76         0         0         0
9           17        18        21        20
10          24         8        22        22
XX
CC  program: feature
CC  matrix.nb: 11
CC  matrix.nb: 11
CC  sites: 76
CC  consensus.strict: aaCGGCGAga
CC  consensus.strict.rc: TCTCGCCGTT
CC  consensus.IUPAC: rrCGGCGAkd
CC  consensus.IUPAC.rc: HMTCGCCGYY
CC  consensus.regexp: [ag][ag]CGGCGA[gt][agt]
CC  consensus.regexp.rc: [ACT][AC]TCGCCG[CT][CT]
XX
//
AC  assembly_12
XX
ID  assembly_12
XX
DE  wtCTTCACww
P0           a         c         g         t
1           94        51        37       107
2           71        56        46       116
3            0       289         0         0
4            0         0         0       289
5            0         0         0       289
6            0       289         0         0
7          289         0         0         0
8            0       289         0         0
9          101        53        46        89
10         100        46        43       100
XX
CC  program: feature
CC  matrix.nb: 12
CC  matrix.nb: 12
CC  sites: 289
CC  consensus.strict: ttCTTCACaa
CC  consensus.strict.rc: TTGTGAAGAA
CC  consensus.IUPAC: wtCTTCACww
CC  consensus.IUPAC.rc: WWGTGAAGAW
CC  consensus.regexp: [at]tCTTCAC[at][at]
CC  consensus.regexp.rc: [AT][AT]GTGAAGA[AT]
XX
//
AC  assembly_13
XX
ID  assembly_13
XX
DE  rwGGAGGAdd
P0           a         c         g         t
1           63        29        62        47
2           88        28        23        62
3            0         0       201         0
4            0         0       201         0
5          201         0         0         0
6            0         0       201         0
7            0         0       201         0
8          201         0         0         0
9           69        10        71        51
10          57        28        62        54
XX
CC  program: feature
CC  matrix.nb: 13
CC  matrix.nb: 13
CC  sites: 201
CC  consensus.strict: aaGGAGGAgg
CC  consensus.strict.rc: CCTCCTCCTT
CC  consensus.IUPAC: rwGGAGGAdd
CC  consensus.IUPAC.rc: HHTCCTCCWY
CC  consensus.regexp: [ag][at]GGAGGA[agt][agt]
CC  consensus.regexp.rc: [ACT][ACT]TCCTCC[AT][CT]
XX
//
AC  assembly_14
XX
ID  assembly_14
XX
DE  ywTCAACGCCww
P0           a         c         g         t
1           43        51        30        80
2           53        36        42        73
3            8         9         3       184
4            5       190         4         5
5          200         3         0         1
6          191         6         0         7
7           20       163        12         9
8           19         5       161        19
9           11       171         6        16
10          14       183         2         5
11          71        33        39        61
12          74        29        32        69
XX
CC  program: feature
CC  matrix.nb: 14
CC  matrix.nb: 14
CC  sites: 204
CC  consensus.strict: ttTCAACGCCaa
CC  consensus.strict.rc: TTGGCGTTGAAA
CC  consensus.IUPAC: ywTCAACGCCww
CC  consensus.IUPAC.rc: WWGGCGTTGAWR
CC  consensus.regexp: [ct][at]TCAACGCC[at][at]
CC  consensus.regexp.rc: [AT][AT]GGCGTTGA[AT][AG]
XX
//
AC  assembly_15
XX
ID  assembly_15
XX
DE  wmACGTGGCww
P0           a         c         g         t
1          192       141       120       168
2          174       214        95       138
3          588         9         7        17
4           44       516        18        43
5           47         9       522        43
6           12        13         5       591
7           16         9       572        24
8           35        18       501        67
9           59       503        25        34
10         241       104        96       180
11         197       114       109       201
XX
CC  program: feature
CC  matrix.nb: 15
CC  matrix.nb: 15
CC  sites: 621
CC  consensus.strict: acACGTGGCat
CC  consensus.strict.rc: ATGCCACGTGT
CC  consensus.IUPAC: wmACGTGGCww
CC  consensus.IUPAC.rc: WWGCCACGTKW
CC  consensus.regexp: [at][ac]ACGTGGC[at][at]
CC  consensus.regexp.rc: [AT][AT]GCCACGT[GT][AT]
XX
//
AC  assembly_16
XX
ID  assembly_16
XX
DE  wwTGCAGCAww
P0           a         c         g         t
1          256       168       176       291
2          293       169       128       301
3           50        16        19       806
4           34        27       793        37
5           97       714        32        48
6          829        12        12        38
7           87        41       682        81
8           60       761        34        36
9          799        28         9        55
10         350       121       173       247
11         309       205       133       244
XX
CC  program: feature
CC  matrix.nb: 16
CC  matrix.nb: 16
CC  sites: 891
CC  consensus.strict: ttTGCAGCAaa
CC  consensus.strict.rc: TTTGCTGCAAA
CC  consensus.IUPAC: wwTGCAGCAww
CC  consensus.IUPAC.rc: WWTGCTGCAWW
CC  consensus.regexp: [at][at]TGCAGCA[at][at]
CC  consensus.regexp.rc: [AT][AT]TGCTGCA[AT][AT]
XX
//
AC  assembly_17
XX
ID  assembly_17
XX
DE  waACGAACww
P0           a         c         g         t
1           69        33        24        43
2           70        30        38        31
3          169         0         0         0
4            0       169         0         0
5            0         0       169         0
6          169         0         0         0
7          169         0         0         0
8            0       169         0         0
9           67        31        25        46
10          63        31        23        52
XX
CC  program: feature
CC  matrix.nb: 17
CC  matrix.nb: 17
CC  sites: 169
CC  consensus.strict: aaACGAACaa
CC  consensus.strict.rc: TTGTTCGTTT
CC  consensus.IUPAC: waACGAACww
CC  consensus.IUPAC.rc: WWGTTCGTTW
CC  consensus.regexp: [at]aACGAAC[at][at]
CC  consensus.regexp.rc: [AT][AT]GTTCGTT[AT]
XX
//
AC  assembly_18
XX
ID  assembly_18
XX
DE  wwAACAGCTww
P0           a         c         g         t
1          449       233       250       412
2          487       302       201       354
3         1240        25        37        42
4         1238        32        35        39
5          143      1044        79        78
6         1246        22        39        37
7          149        55      1016       124
8          104      1099        38       103
9           48        30        13      1253
10         383       219       218       524
11         434       263       206       441
XX
CC  program: feature
CC  matrix.nb: 18
CC  matrix.nb: 18
CC  sites: 1344
CC  consensus.strict: aaAACAGCTtt
CC  consensus.strict.rc: AAAGCTGTTTT
CC  consensus.IUPAC: wwAACAGCTww
CC  consensus.IUPAC.rc: WWAGCTGTTWW
CC  consensus.regexp: [at][at]AACAGCT[at][at]
CC  consensus.regexp.rc: [AT][AT]AGCTGTT[AT][AT]
XX
//
AC  assembly_19
XX
ID  assembly_19
XX
DE  wwTTcAAGAAGAAmww
P0           a         c         g         t
1          308        92       151       244
2          257       122       145       271
3          114        40        62       579
4           73        42        40       640
5          116       499        95        85
6          706        26        25        38
7          706        19        25        45
8          117        65       554        59
9          694        34        32        35
10         726        15        18        36
11         130        62       554        49
12         728        26        17        24
13         627        48        43        77
14         241       280       138       136
15         355       121       110       209
16         313       112       111       259
XX
CC  program: feature
CC  matrix.nb: 19
CC  matrix.nb: 19
CC  sites: 795
CC  consensus.strict: atTTcAAGAAGAAcaa
CC  consensus.strict.rc: TTGTTCTTCTTGAAAT
CC  consensus.IUPAC: wwTTcAAGAAGAAmww
CC  consensus.IUPAC.rc: WWKTTCTTCTTGAAWW
CC  consensus.regexp: [at][at]TTcAAGAAGAA[ac][at][at]
CC  consensus.regexp.rc: [AT][AT][GT]TTCTTCTTGAA[AT][AT]
XX
//
AC  assembly_20
XX
ID  assembly_20
XX
DE  wwCTTGGAww
P0           a         c         g         t
1           96        36        44       101
2           93        32        53        99
3            0       277         0         0
4            0         0         0       277
5            0         0         0       277
6            0         0       277         0
7            0         0       277         0
8          277         0         0         0
9           95        55        54        73
10          94        56        42        85
XX
CC  program: feature
CC  matrix.nb: 20
CC  matrix.nb: 20
CC  sites: 277
CC  consensus.strict: ttCTTGGAaa
CC  consensus.strict.rc: TTTCCAAGAA
CC  consensus.IUPAC: wwCTTGGAww
CC  consensus.IUPAC.rc: WWTCCAAGWW
CC  consensus.regexp: [at][at]CTTGGA[at][at]
CC  consensus.regexp.rc: [AT][AT]TCCAAG[AT][AT]
XX
//
