; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2025/09/16/oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/09/16/oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/09/16/oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2025/09/16/oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2025/09/16/oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 4 2 3 1 0 0 3 0 4 0 0 0 0 0 0 1 2 0 1 0
c 0 1 1 1 3 0 1 4 0 4 0 0 0 0 4 0 0 0 0 0
g 0 0 0 0 0 4 0 0 0 0 4 0 4 1 0 3 1 1 1 0
t 0 1 0 2 1 0 0 0 0 0 0 4 0 3 0 0 1 3 2 4
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m1_rc.png
;
a 103 88 63 49 35 16 11 17 274 268 239 53 100 84
c 35 38 13 26 9 7 6 240 1 6 19 24 42 56
g 43 48 30 25 202 241 1 13 6 6 3 160 53 39
t 104 111 179 185 39 21 267 15 4 5 24 48 90 106
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m2_rc.png
;
a 88 83 211 212 211 214 28 19 32 230 229 219 34 86 92
c 31 50 15 12 10 5 16 11 181 6 3 6 27 40 34
g 39 44 7 7 9 8 177 4 17 5 5 5 147 41 36
t 88 69 13 15 16 19 25 212 16 5 9 16 38 79 84
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m3_rc.png
;
a 131 106 269 10 12 17 300 18 27 228 191 112 110
c 47 67 7 2 5 15 4 288 253 27 39 60 55
g 46 60 20 3 13 274 10 4 12 25 23 40 49
t 101 92 29 310 295 19 11 15 33 45 72 113 111
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m4_rc.png
;
a 93 64 23 19 17 13 5 10 212 217 45 41 88 76
c 27 25 14 8 2 3 4 194 6 6 118 26 28 41
g 36 45 21 8 191 207 2 11 8 4 12 24 33 28
t 76 98 174 197 22 9 221 17 6 5 57 141 83 87
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m5_rc.png
;
a 10 17 35 39 7 39 4 2 1 1 0 3 8 11 7 20 16
c 12 6 3 1 36 0 40 0 0 5 0 35 1 1 5 9 5
g 5 6 8 2 2 4 1 38 2 39 3 1 34 23 3 4 9
t 20 18 1 5 2 4 2 7 44 2 44 8 4 12 32 14 17
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m6_rc.png
;
a 28 34 6 83 3 7 1 3 3 77 30 35
c 11 9 13 2 81 1 2 0 4 5 18 17
g 24 16 67 4 0 78 1 86 77 4 14 22
t 27 31 4 1 6 4 86 1 6 4 28 16
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m7_rc.png
;
a 52 55 19 12 4 11 161 11 156 70 67
c 24 25 6 131 164 13 7 156 6 36 28
g 33 36 140 2 3 141 1 2 5 15 37
t 63 56 7 27 1 7 3 3 5 51 40
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m8_rc.png
;
a 103 96 266 0 0 266 266 0 75 108
c 40 51 0 266 0 0 0 0 46 27
g 23 42 0 0 0 0 0 0 41 46
t 100 77 0 0 266 0 0 266 104 85
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m9_rc.png
;
a 38 38 8 6 5 4 11 115 4 109 51 42
c 20 15 5 1 6 107 4 0 115 4 22 26
g 26 22 4 115 0 4 107 6 1 5 15 20
t 42 51 109 4 115 11 4 5 6 8 38 38
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m10_rc.png
;
a 14 10 28 4 4 3 35 1 33 2 4 2 18 10 8
c 5 10 4 26 29 2 1 35 1 30 2 22 4 11 8
g 3 8 2 0 0 28 0 0 1 0 30 3 7 3 8
t 14 8 2 6 3 3 0 0 1 4 0 9 7 12 12
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m11_rc.png
;
a 119 125 307 332 31 11 328 44 8 23 117 123
c 57 62 8 4 258 3 6 15 4 10 44 49
g 49 44 10 4 15 6 3 258 4 8 62 57
t 123 117 23 8 44 328 11 31 332 307 125 119
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m12.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m12_rc.png
;
a 654 608 1467 84 1481 1491 1509 1483 179 598 585
c 235 260 37 87 51 35 25 38 107 243 250
g 223 267 38 80 41 37 44 25 1119 229 282
t 522 499 92 1383 61 71 56 88 229 564 517
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m13.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m13_rc.png
;
a 504 626 1373 1398 92 200 1357 1373 129 524 551
c 292 253 39 21 31 76 45 30 31 267 200
g 250 187 23 36 38 1075 45 36 40 241 234
t 479 459 90 70 1364 174 78 86 1325 493 540
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m14.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m14_rc.png
;
a 70 68 0 203 203 203 0 0 77 88
c 33 37 203 0 0 0 0 0 24 19
g 34 26 0 0 0 0 0 203 38 30
t 66 72 0 0 0 0 203 0 64 66
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m15.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m15_rc.png
;
a 128 108 112 232 23 10 12 261 259 247 25 90 92
c 40 43 46 4 10 6 233 2 1 5 16 43 39
g 26 39 38 14 207 4 9 2 4 2 202 47 44
t 73 77 71 17 27 247 13 2 3 13 24 87 92
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m16.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m16_rc.png
;
a 63 37 134 0 134 0 134 0 72 56
c 17 30 0 134 0 0 0 134 19 15
g 21 18 0 0 0 0 0 0 15 16
t 33 49 0 0 0 134 0 0 28 47
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m17.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m17_rc.png
;
a 15 12 11 38 3 42 2 1 2 0 2 2 10 13 8 18 15
c 8 10 19 2 37 0 40 0 0 1 0 33 2 1 4 9 3
g 6 4 13 2 2 2 0 43 1 40 2 3 26 18 8 7 7
t 16 19 2 3 3 1 3 1 42 4 41 7 7 13 25 11 20
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m18.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m18_rc.png
;
a 133 103 64 66 349 35 17 337 37 20 35 103 122
c 46 66 208 216 4 291 11 4 24 9 23 40 69
g 65 64 26 25 2 9 8 2 274 4 24 71 58
t 123 134 69 60 12 32 331 24 32 334 285 153 118
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m19.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m19_rc.png
;
a 137 133 84 11 12 10 348 347 340 65 115 123
c 60 56 23 8 4 323 2 3 6 39 55 56
g 58 52 52 319 7 13 3 1 1 181 56 56
t 101 115 197 18 333 10 3 5 9 71 130 121
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m20.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/16//oligo-analysis_2025-09-16.142808_aPJKkx_pssm_count_matrices_logo_m20_rc.png
;
; Host name rsat
; Job started 2025-09-16.142822
; Job done 2025-09-16.142829
; Seconds 0.28
; user 0.28
; system 0.22
; cuser 5.4
; csystem 0.8