; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2025/09/17/oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/09/17/oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/09/17/oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2025/09/17/oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2025/09/17/oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 37 37 23 17 88 5 110 6 8 5 3 9 19 27 36 46
c 13 17 21 12 16 107 2 104 0 1 3 5 70 47 28 22
g 22 28 47 70 5 3 1 0 104 2 107 16 12 21 17 13
t 46 36 27 19 9 3 5 8 6 110 5 88 17 23 37 37
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m1_rc.png
;
a 80 74 127 37 11 6 6 5 212 38 48 78 90
c 32 29 18 1 3 192 212 204 0 4 21 26 36
g 26 28 26 177 198 8 0 3 2 3 22 32 32
t 81 88 48 4 7 13 1 7 5 174 128 83 61
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m2_rc.png
;
a 59 63 109 38 15 8 14 17 171 141 28 138 136 46 59 63
c 23 26 16 2 8 153 154 146 1 6 8 9 10 10 26 37
g 27 25 17 126 146 7 2 3 1 2 11 10 10 25 30 35
t 68 63 35 11 8 9 7 11 4 28 130 20 21 96 62 42
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m3_rc.png
;
a 122 104 175 236 24 14 5 15 266 47 68 110 97
c 49 50 22 1 6 251 263 252 3 8 22 30 47
g 25 35 25 38 234 6 0 5 5 4 25 34 50
t 83 90 57 4 15 8 11 7 5 220 164 105 85
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m4_rc.png
;
a 60 50 32 39 133 7 170 9 9 6 14 121 51 55
c 27 38 17 13 14 156 4 149 0 3 6 6 47 37
g 29 37 86 99 8 4 0 3 158 3 149 23 28 39
t 60 51 41 25 21 9 2 15 9 164 7 26 50 45
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m5_rc.png
;
a 102 100 0 0 0 281 281 281 92 91
c 22 34 0 0 281 0 0 0 53 41
g 44 56 281 0 0 0 0 0 54 43
t 113 91 0 281 0 0 0 0 82 106
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m6_rc.png
;
a 42 42 28 26 106 3 128 6 4 5 5 22 34 37
c 20 24 16 12 6 120 0 115 0 1 6 6 40 23
g 27 28 54 74 8 6 2 4 120 1 116 77 25 32
t 42 37 33 19 11 2 1 6 7 124 4 26 32 39
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m7_rc.png
;
a 106 113 25 13 5 308 21 334 28 318 128 132
c 49 49 12 6 8 7 284 4 10 0 44 56
g 54 60 283 1 7 13 16 7 8 10 44 55
t 143 130 32 332 332 24 31 7 306 24 136 109
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m8_rc.png
;
a 598 578 166 200 1408 1429 1393 115 1344 564 593
c 201 245 1193 1201 61 32 40 67 46 233 222
g 296 231 50 42 20 13 21 48 30 180 210
t 431 472 117 83 37 52 72 1296 106 549 501
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m9_rc.png
;
a 45 59 0 0 138 0 0 138 48 46
c 15 16 138 0 0 0 0 0 16 21
g 19 19 0 0 0 138 0 0 30 19
t 59 44 0 138 0 0 138 0 44 52
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m10_rc.png
;
a 46 58 59 160 0 160 160 0 0 70 64
c 25 37 34 0 0 0 0 160 160 25 27
g 26 13 21 0 0 0 0 0 0 22 14
t 63 52 46 0 160 0 0 0 0 43 55
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m11_rc.png
;
a 95 97 160 48 14 18 6 15 269 239 166 99 97
c 43 38 29 1 4 233 264 246 4 7 21 39 69
g 44 39 26 216 250 12 1 5 1 3 21 36 40
t 95 103 62 12 9 14 6 11 3 28 69 103 71
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m12.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m12_rc.png
;
a 45 54 82 129 5 147 9 15 6 5 17 33 39 50 53
c 31 28 17 13 140 1 138 4 1 4 8 83 57 38 32
g 37 27 31 4 4 2 2 135 0 141 15 15 25 26 29
t 44 48 27 11 8 7 8 3 150 7 117 26 36 43 43
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m13.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m13_rc.png
;
a 49 48 36 29 129 7 151 6 13 7 7 13 74 50 46
c 18 22 22 14 13 136 0 138 1 2 4 4 36 30 35
g 33 34 65 91 7 6 3 2 133 0 140 18 18 33 32
t 58 54 35 24 9 9 4 12 11 149 7 123 30 45 45
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m14.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m14_rc.png
;
a 102 126 329 0 0 329 329 0 105 126
c 79 70 0 329 0 0 0 0 55 55
g 38 58 0 0 0 0 0 0 46 43
t 110 75 0 0 329 0 0 329 123 105
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m15.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m15_rc.png
;
a 64 69 110 150 28 11 10 16 170 150 25 149 124 35 56 62
c 26 28 21 2 12 147 153 144 1 5 10 5 13 13 35 24
g 19 18 15 16 126 9 4 5 1 3 6 4 12 23 35 36
t 65 59 28 6 8 7 7 9 2 16 133 16 25 103 48 52
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m16.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m16_rc.png
;
a 383 397 986 65 48 83 54 88 1049 429 398
c 167 231 26 16 24 50 23 882 17 186 188
g 155 142 23 31 21 804 12 50 18 125 174
t 413 348 83 1006 1025 181 1029 98 34 378 358
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m17.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m17_rc.png
;
a 160 160 34 51 389 392 386 10 374 300 305 115 132 141
c 56 60 347 336 11 11 9 24 15 35 22 145 75 64
g 91 67 9 10 5 2 8 14 6 25 21 45 62 73
t 107 127 24 17 9 9 11 366 19 54 66 109 145 136
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m18.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m18_rc.png
;
a 138 126 290 17 14 315 9 9 23 50 70 251 113 113
c 65 68 13 8 6 3 2 3 12 19 19 30 67 59
g 41 51 9 10 4 11 12 9 271 222 214 22 53 59
t 112 111 44 321 332 27 333 335 50 65 53 53 123 125
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m19.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m19_rc.png
;
a 114 113 299 299 0 0 0 299 109 113
c 33 62 0 0 0 0 0 0 49 44
g 55 45 0 0 299 0 0 0 43 52
t 97 79 0 0 0 299 299 0 98 90
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m20.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.114843_cPPSt0_pssm_count_matrices_logo_m20_rc.png
;
; Host name rsat
; Job started 2025-09-17.114857
; Job done 2025-09-17.114904
; Seconds 0.33
; user 0.33
; system 0.2
; cuser 5.07
; csystem 0.8