; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/09/17/oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/09/17/oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/09/17/oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/17/oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/17/oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	559	669	1184	1238	274	1297	223	1358	182	1325	188	1288	533	624
c	185	245	50	54	807	38	77	24	48	27	83	33	197	214
g	388	305	147	81	281	48	1063	29	1162	47	1100	57	405	278
t	323	236	74	82	93	72	92	44	63	56	84	77	320	339
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m1_rc.png
;
a	552	682	278	226	1557	1587	207	1596	1585	257	1609	1505	656	795
c	286	254	108	1036	66	41	105	50	37	109	53	74	235	305
g	378	285	117	340	69	65	1343	67	62	1309	52	77	491	259
t	556	551	1269	170	80	79	117	59	88	97	58	116	390	413
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m2_rc.png
;
a	61	74	31	36	7	9	5	12	13	13	200	46	205	76	77
c	59	56	10	160	3	217	3	207	7	25	11	18	14	59	49
g	47	39	11	15	4	6	6	9	9	206	12	162	14	35	45
t	85	83	200	41	238	20	238	24	223	8	29	26	19	82	81
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m3_rc.png
;
a	69	75	43	186	19	33	183	18	32	13	4	12	21	11	20	15	24	59	76
c	59	44	59	22	18	179	23	25	193	10	17	231	11	14	217	17	172	79	46
g	43	50	127	19	20	25	12	156	14	6	12	9	6	9	16	7	19	45	55
t	102	104	44	46	216	36	55	74	34	244	240	21	235	239	20	234	58	90	96
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m4_rc.png
;
a	238	191	528	178	69	570	549	43	571	549	58	571	168	247	278
c	89	68	15	31	16	11	11	25	20	11	18	10	45	49	92
g	130	258	25	343	503	21	31	522	14	21	519	17	342	191	115
t	154	94	43	59	23	9	20	21	6	30	16	13	56	124	126
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m5_rc.png
;
a	57	62	41	43	16	20	8	3	13	18	21	19	14	16	20	16	13	22	25	57	52
c	54	67	46	114	17	198	12	230	7	33	171	21	14	204	17	24	204	18	149	79	51
g	37	47	28	27	13	14	7	9	8	145	8	12	14	8	15	18	18	6	26	38	57
t	126	98	159	90	228	42	247	32	246	78	74	222	232	46	222	216	39	228	74	100	114
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m6_rc.png
;
a	116	101	67	38	18	336	339	25	334	334	29	344	68	151	152
c	66	62	219	9	19	8	6	14	24	10	13	8	29	43	76
g	79	109	33	22	328	25	17	332	12	11	331	8	241	107	64
t	118	107	60	310	14	10	17	8	9	24	6	19	41	78	87
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m7_rc.png
;
a	129	157	289	295	45	290	38	311	51	45	310	53	285	121	132
c	53	53	14	11	242	12	13	3	9	25	8	14	12	45	40
g	93	66	15	18	29	19	272	11	257	258	4	247	18	75	75
t	62	61	19	13	21	16	14	12	20	9	15	23	22	96	90
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m8_rc.png
;
a	30	31	0	0	0	0	0	121	36	42
c	22	38	121	0	0	121	0	0	25	14
g	36	23	0	121	121	0	121	0	34	39
t	33	29	0	0	0	0	0	0	26	26
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m9_rc.png
;
a	214	255	311	497	28	525	39	528	29	108	412	213	197
c	72	87	65	7	474	3	7	3	11	342	44	77	110
g	140	87	81	16	30	5	477	5	484	50	40	107	93
t	117	114	86	23	11	10	20	7	19	43	47	146	143
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m10_rc.png
;
a	126	135	0	376	376	0	0	376	134	145
c	55	33	0	0	0	0	0	0	36	49
g	93	77	376	0	0	376	376	0	122	96
t	102	131	0	0	0	0	0	0	84	86
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m11_rc.png
;
a	124	116	110	307	23	327	336	26	326	336	34	134	311	45	130	172	111
c	72	60	28	16	14	14	7	8	17	8	2	187	16	18	186	48	39
g	75	128	203	23	314	13	16	327	15	14	310	32	14	278	27	52	124
t	98	65	28	23	18	15	10	8	11	11	23	16	28	28	26	97	95
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m12.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m12_rc.png
;
a	32	22	1	0	2	3	3	7	1	5	8	32	31
c	44	37	7	122	3	107	123	0	125	113	2	32	42
g	14	15	2	1	5	3	3	2	3	2	107	23	12
t	41	57	121	8	121	18	2	122	2	11	14	44	46
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m13.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m13_rc.png
;
a	84	96	280	0	0	0	0	280	92	87
c	64	59	0	0	280	0	280	0	56	57
g	52	58	0	280	0	0	0	0	53	69
t	80	67	0	0	0	280	0	0	79	67
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m14.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m14_rc.png
;
a	380	273	756	286	110	859	809	64	861	810	92	843	390	177	484	368
c	149	131	35	57	43	14	20	30	26	33	34	28	272	45	138	138
g	171	381	53	465	730	36	47	808	32	37	773	33	103	601	126	181
t	227	142	83	119	44	18	51	25	8	47	28	23	162	104	179	240
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m15.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m15_rc.png
;
a	245	238	131	129	92	676	70	690	67	712	101	635	269	299
c	118	146	53	416	530	18	26	15	20	9	47	31	115	134
g	162	136	61	96	73	20	603	24	634	13	547	37	174	140
t	224	229	504	108	54	35	50	20	28	15	54	46	191	176
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m16.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m16_rc.png
;
a	178	171	174	404	85	87	468	35	472	25	462	123	380	179	184
c	86	64	164	26	28	352	6	11	10	8	10	44	33	81	87
g	93	134	92	24	339	39	6	436	9	448	15	271	39	122	101
t	138	126	65	41	43	17	15	13	4	14	8	57	43	113	123
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m17.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m17_rc.png
;
a	151	138	0	377	377	377	0	0	145	160
c	80	68	0	0	0	0	377	377	84	59
g	57	62	377	0	0	0	0	0	66	52
t	89	109	0	0	0	0	0	0	82	106
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m18.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m18_rc.png
;
a	96	80	73	200	22	22	260	33	24	15	17	10	245	41	97	106
c	65	57	57	42	8	245	5	14	240	11	13	263	11	21	68	52
g	48	61	120	23	32	21	4	222	12	3	10	10	13	211	50	49
t	92	103	51	36	239	13	32	32	25	272	261	18	32	28	86	94
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m19.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m19_rc.png
;
a	341	362	82	89	67	57	996	73	978	384	359
c	200	149	796	797	18	27	15	20	21	162	178
g	187	216	69	34	48	912	11	917	19	228	223
t	314	315	95	122	909	46	20	32	24	268	282
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m20.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/09/17//oligo-analysis_2025-09-17.174318_JSZ0Qt_pssm_count_matrices_logo_m20_rc.png
;
; Host name	rsat
; Job started	2025-09-17.174334
; Job done	2025-09-17.174340
; Seconds	0.42
;	user	0.42
;	system	0.22
;	cuser	5.49
;	csystem	0.84