One-to-n alignments

Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.093943_2025-09-18.093943_8WOuvq/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.093943_2025-09-18.093943_8WOuvq/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m4_shift6 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m4_shift6 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=16; shift=6; ncol=22; ------wwTAAAAATAAATwww ; Alignment reference a 0 0 0 0 0 0 324 356 109 737 742 781 751 782 98 770 694 735 168 381 296 377 c 0 0 0 0 0 0 116 98 41 40 29 19 34 23 40 28 51 38 46 104 150 130 g 0 0 0 0 0 0 105 132 46 32 28 21 24 25 54 26 33 38 44 147 115 128 t 0 0 0 0 0 0 340 299 689 76 86 64 76 55 693 61 107 74 627 253 324 250

oligos_7nt_test_vs_ctrl_m4_shift6 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/9; ncol2=16; w=0; offset=0; strand=D; shift=6; score= 1; ------wwTAAAAATAAATwww ; cor=; Ncor= a 0 0 0 0 0 0 324 356 109 737 742 781 751 782 98 770 694 735 168 381 296 377 c 0 0 0 0 0 0 116 98 41 40 29 19 34 23 40 28 51 38 46 104 150 130 g 0 0 0 0 0 0 105 132 46 32 28 21 24 25 54 26 33 38 44 147 115 128 t 0 0 0 0 0 0 340 299 689 76 86 64 76 55 693 61 107 74 627 253 324 250

oligos_7nt_test_vs_ctrl_m3_shift7 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3; m=2/9; ncol2=14; w=0; offset=1; strand=D; shift=7; score=0.670254; -------wwAACAATAAtwww- ; cor=; Ncor= a 0 0 0 0 0 0 0 181 168 409 442 49 435 428 34 437 414 91 128 192 156 0 c 0 0 0 0 0 0 0 71 87 15 11 357 10 12 13 5 10 44 44 68 94 0 g 0 0 0 0 0 0 0 91 69 14 11 15 6 15 13 8 11 46 82 84 61 0 t 0 0 0 0 0 0 0 135 154 40 14 57 27 23 418 28 43 297 224 134 167 0

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1; m=3/9; ncol2=22; w=-6; offset=-6; strand=D; shift=0; score=0.648731; wwtAAAAATwAAAATAAAwwww ; cor=; Ncor= a 126 138 50 239 236 242 235 253 57 97 235 239 253 263 40 251 238 233 80 154 108 137 c 33 29 25 20 12 15 16 9 16 13 13 10 10 8 14 15 12 14 12 21 50 35 g 32 42 26 13 14 6 8 13 19 12 14 11 11 11 20 11 8 7 18 46 39 26 t 113 95 203 32 42 41 45 29 212 182 42 44 30 22 230 27 46 50 194 83 107 106

oligos_7nt_test_vs_ctrl_m2_shift2 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2; m=4/9; ncol2=20; w=-4; offset=-4; strand=D; shift=2; score=0.613683; --wwdAATATAAAATAAAtwww ; cor=; Ncor= a 0 0 151 153 97 256 286 50 283 48 307 276 290 305 39 312 266 259 75 170 107 158 c 0 0 57 29 32 22 14 19 15 14 9 21 12 12 11 5 21 30 32 40 55 42 g 0 0 52 47 131 20 19 23 20 19 14 15 7 7 13 11 14 23 10 41 67 66 t 0 0 95 126 95 57 36 263 37 274 25 43 46 31 292 27 54 43 238 104 126 89

oligos_6nt_test_vs_ctrl_m1_shift5 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1; m=5/9; ncol2=24; w=-1; offset=-1; strand=D; shift=5; score=0.54167; -----wwwTAAAAATAtAAAtA ; cor=; Ncor= a 0 0 0 0 0 80 73 57 34 148 135 146 142 147 44 146 34 150 137 148 35 142 c 0 0 0 0 0 22 21 10 9 7 15 8 5 11 5 6 16 9 11 6 9 8 g 0 0 0 0 0 15 22 7 10 3 7 3 3 5 6 12 8 4 5 2 14 8 t 0 0 0 0 0 64 65 107 128 23 24 24 31 18 126 17 123 18 28 25 123 23

oligos_6nt_test_vs_ctrl_m3_rc_shift4 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m3_rc; m=6/9; ncol2=24; w=-2; offset=-2; strand=R; shift=4; score=0.538689; ----wwwtTAAAAATTAATTTT ; cor=; Ncor= a 0 0 0 0 61 45 78 30 20 104 105 112 106 99 11 25 102 110 24 18 14 22 c 0 0 0 0 6 12 9 9 8 5 6 6 8 3 11 6 7 7 10 4 5 12 g 0 0 0 0 20 17 8 5 5 8 8 5 5 9 14 9 8 8 3 5 10 4 t 0 0 0 0 47 60 39 90 101 17 15 11 15 23 98 94 17 9 97 107 105 96

oligos_6nt_test_vs_ctrl_m4_shift7 (oligos_6nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=7/9; ncol2=24; w=0; offset=1; strand=D; shift=7; score=0.50511; -------awAkAAAtAAATATA ; cor=; Ncor= a 0 0 0 0 0 0 0 80 66 118 38 126 117 136 33 128 112 139 23 133 29 132 c 0 0 0 0 0 0 0 23 28 15 14 9 12 5 9 3 10 5 13 5 8 4 g 0 0 0 0 0 0 0 20 15 6 47 5 6 6 10 6 0 5 11 5 11 6 t 0 0 0 0 0 0 0 35 49 19 59 18 23 11 106 21 36 9 111 15 110 16

oligos_6nt_test_vs_ctrl_m2_shift4 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2; m=8/9; ncol2=24; w=-2; offset=-2; strand=D; shift=4; score=0.492625; ----wwwTTwAAAATAATATAA ; cor=; Ncor= a 0 0 0 0 85 62 56 45 39 140 158 156 158 165 41 157 153 35 161 32 171 162 c 0 0 0 0 22 30 10 11 17 5 13 8 6 9 5 11 12 15 11 9 8 2 g 0 0 0 0 30 23 22 8 8 10 6 5 3 7 7 16 8 6 10 12 3 7 t 0 0 0 0 70 92 119 143 143 52 30 38 40 26 154 23 34 151 25 154 25 36

oligos_6nt_test_vs_ctrl_m5_shift8 (oligos_6nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m5; m=9/9; ncol2=24; w=0; offset=2; strand=D; shift=8; score=0.41989; --------wwAhAAwAAATAAT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 54 57 93 42 101 108 34 110 98 107 26 114 115 27 c 0 0 0 0 0 0 0 0 18 18 7 44 19 5 22 7 11 5 8 7 4 6 g 0 0 0 0 0 0 0 0 13 13 18 8 2 8 1 4 3 7 4 4 6 1 t 0 0 0 0 0 0 0 0 50 47 17 41 13 14 78 14 23 16 97 10 10 101

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m1_shift1 ; 10 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=22; shift=1; ncol=23; -wwtAAAAATwAAAATAAAwwww ; Alignment reference a 0 126 138 50 239 236 242 235 253 57 97 235 239 253 263 40 251 238 233 80 154 108 137 c 0 33 29 25 20 12 15 16 9 16 13 13 10 10 8 14 15 12 14 12 21 50 35 g 0 32 42 26 13 14 6 8 13 19 12 14 11 11 11 20 11 8 7 18 46 39 26 t 0 113 95 203 32 42 41 45 29 212 182 42 44 30 22 230 27 46 50 194 83 107 106

oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/9; ncol2=22; w=0; offset=0; strand=D; shift=1; score= 1; -wwtAAAAATwAAAATAAAwwww ; cor=; Ncor= a 0 126 138 50 239 236 242 235 253 57 97 235 239 253 263 40 251 238 233 80 154 108 137 c 0 33 29 25 20 12 15 16 9 16 13 13 10 10 8 14 15 12 14 12 21 50 35 g 0 32 42 26 13 14 6 8 13 19 12 14 11 11 11 20 11 8 7 18 46 39 26 t 0 113 95 203 32 42 41 45 29 212 182 42 44 30 22 230 27 46 50 194 83 107 106

oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=2/9; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.785236; wwwTAAAAATAtAAAtAAAAtww ; cor=; Ncor= a 80 73 57 34 148 135 146 142 147 44 146 34 150 137 148 35 142 145 150 125 42 48 82 c 22 21 10 9 7 15 8 5 11 5 6 16 9 11 6 9 8 8 3 6 18 13 28 g 15 22 7 10 3 7 3 3 5 6 12 8 4 5 2 14 8 4 8 12 10 13 25 t 64 65 107 128 23 24 24 31 18 126 17 123 18 28 25 123 23 24 20 38 111 107 46

oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=3/9; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.733402; wwwTTwAAAATAATATAAAwAtw ; cor=; Ncor= a 85 62 56 45 39 140 158 156 158 165 41 157 153 35 161 32 171 162 166 54 144 49 84 c 22 30 10 11 17 5 13 8 6 9 5 11 12 15 11 9 8 2 5 10 16 13 29 g 30 23 22 8 8 10 6 5 3 7 7 16 8 6 10 12 3 7 9 8 14 9 27 t 70 92 119 143 143 52 30 38 40 26 154 23 34 151 25 154 25 36 27 135 33 136 67

oligos_7nt_test_vs_ctrl_m2_shift3 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=4/9; ncol2=20; w=0; offset=2; strand=D; shift=3; score=0.719588; ---wwdAATATAAAATAAAtwww ; cor=; Ncor= a 0 0 0 151 153 97 256 286 50 283 48 307 276 290 305 39 312 266 259 75 170 107 158 c 0 0 0 57 29 32 22 14 19 15 14 9 21 12 12 11 5 21 30 32 40 55 42 g 0 0 0 52 47 131 20 19 23 20 19 14 15 7 7 13 11 14 23 10 41 67 66 t 0 0 0 95 126 95 57 36 263 37 274 25 43 46 31 292 27 54 43 238 104 126 89

oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5; m=5/9; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.676919; wwAhAAwAAATAATAtAAAATAw ; cor=; Ncor= a 54 57 93 42 101 108 34 110 98 107 26 114 115 27 119 28 117 97 111 110 21 108 47 c 18 18 7 44 19 5 22 7 11 5 8 7 4 6 3 10 0 6 5 4 4 6 22 g 13 13 18 8 2 8 1 4 3 7 4 4 6 1 5 7 7 3 1 2 7 8 8 t 50 47 17 41 13 14 78 14 23 16 97 10 10 101 8 90 11 29 18 19 103 13 58

oligos_7nt_test_vs_ctrl_m4_shift7 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4; m=6/9; ncol2=16; w=0; offset=6; strand=D; shift=7; score=0.648731; -------wwTAAAAATAAATwww ; cor=; Ncor= a 0 0 0 0 0 0 0 324 356 109 737 742 781 751 782 98 770 694 735 168 381 296 377 c 0 0 0 0 0 0 0 116 98 41 40 29 19 34 23 40 28 51 38 46 104 150 130 g 0 0 0 0 0 0 0 105 132 46 32 28 21 24 25 54 26 33 38 44 147 115 128 t 0 0 0 0 0 0 0 340 299 689 76 86 64 76 55 693 61 107 74 627 253 324 250

oligos_6nt_test_vs_ctrl_m4_shift2 (oligos_6nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=7/9; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.637993; --awAkAAAtAAATATAAAAwAh ; cor=; Ncor= a 0 0 80 66 118 38 126 117 136 33 128 112 139 23 133 29 132 119 128 137 40 130 58 c 0 0 23 28 15 14 9 12 5 9 3 10 5 13 5 8 4 3 2 5 7 3 42 g 0 0 20 15 6 47 5 6 6 10 6 0 5 11 5 11 6 8 4 2 5 7 8 t 0 0 35 49 19 59 18 23 11 106 21 36 9 111 15 110 16 28 24 14 106 18 50

oligos_6nt_test_vs_ctrl_m3_rc_shift5 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3_rc; m=8/9; ncol2=24; w=0; offset=4; strand=R; shift=5; score=0.450139; -----wwwtTAAAAATTAATTTT ; cor=; Ncor= a 0 0 0 0 0 61 45 78 30 20 104 105 112 106 99 11 25 102 110 24 18 14 22 c 0 0 0 0 0 6 12 9 9 8 5 6 6 8 3 11 6 7 7 10 4 5 12 g 0 0 0 0 0 20 17 8 5 5 8 8 5 5 9 14 9 8 8 3 5 10 4 t 0 0 0 0 0 47 60 39 90 101 17 15 11 15 23 98 94 17 9 97 107 105 96

oligos_7nt_test_vs_ctrl_m3_shift8 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3; m=9/9; ncol2=14; w=0; offset=7; strand=D; shift=8; score=0.449676; --------wwAACAATAAtwww- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 181 168 409 442 49 435 428 34 437 414 91 128 192 156 0 c 0 0 0 0 0 0 0 0 71 87 15 11 357 10 12 13 5 10 44 44 68 94 0 g 0 0 0 0 0 0 0 0 91 69 14 11 15 6 15 13 8 11 46 82 84 61 0 t 0 0 0 0 0 0 0 0 135 154 40 14 57 27 23 418 28 43 297 224 134 167 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m3_shift0 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=24; shift=0; ncol=24; wwTTTAAAAATTAATTTTTAawww ; Alignment reference a 48 43 23 25 19 105 96 105 107 97 9 17 94 98 23 15 11 15 17 101 90 39 60 47 c 15 17 5 5 8 5 4 10 5 3 8 8 9 14 9 5 5 8 8 5 5 8 17 20 g 18 16 9 2 5 7 12 5 4 10 7 7 6 11 3 8 6 6 5 8 9 9 12 6 t 53 58 97 102 102 17 22 14 18 24 110 102 25 11 99 106 112 105 104 20 30 78 45 61

oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/3; ncol2=24; w=0; offset=0; strand=D; shift=0; score= 1; wwTTTAAAAATTAATTTTTAawww ; cor=; Ncor= a 48 43 23 25 19 105 96 105 107 97 9 17 94 98 23 15 11 15 17 101 90 39 60 47 c 15 17 5 5 8 5 4 10 5 3 8 8 9 14 9 5 5 8 8 5 5 8 17 20 g 18 16 9 2 5 7 12 5 4 10 7 7 6 11 3 8 6 6 5 8 9 9 12 6 t 53 58 97 102 102 17 22 14 18 24 110 102 25 11 99 106 112 105 104 20 30 78 45 61

oligos_7nt_test_vs_ctrl_m4_rc_shift6 (oligos_7nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4_rc; m=2/3; ncol2=16; w=0; offset=6; strand=R; shift=6; score=0.538689; ------wwwATTTATTTTTAww-- ; cor=; Ncor= a 0 0 0 0 0 0 250 324 253 627 74 107 61 693 55 76 64 86 76 689 299 340 0 0 c 0 0 0 0 0 0 128 115 147 44 38 33 26 54 25 24 21 28 32 46 132 105 0 0 g 0 0 0 0 0 0 130 150 104 46 38 51 28 40 23 34 19 29 40 41 98 116 0 0 t 0 0 0 0 0 0 377 296 381 168 735 694 770 98 782 751 781 742 737 109 356 324 0 0

oligos_7nt_test_vs_ctrl_m1_rc_shift6 (oligos_7nt_test_vs_ctrl_m1_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m1_rc; m=3/3; ncol2=22; w=0; offset=6; strand=R; shift=6; score=0.450139; ------wwwwTTTATTTTwATTTT ; cor=; Ncor= a 0 0 0 0 0 0 106 107 83 194 50 46 27 230 22 30 44 42 182 212 29 45 41 42 c 0 0 0 0 0 0 26 39 46 18 7 8 11 20 11 11 11 14 12 19 13 8 6 14 g 0 0 0 0 0 0 35 50 21 12 14 12 15 14 8 10 10 13 13 16 9 16 15 12 t 0 0 0 0 0 0 137 108 154 80 233 238 251 40 263 253 239 235 97 57 253 235 242 236

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m5_shift2 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m5_shift2 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=24; shift=2; ncol=26; --wwAhAAwAAATAATAtAAAATAww ; Alignment reference a 0 0 54 57 93 42 101 108 34 110 98 107 26 114 115 27 119 28 117 97 111 110 21 108 47 56 c 0 0 18 18 7 44 19 5 22 7 11 5 8 7 4 6 3 10 0 6 5 4 4 6 22 24 g 0 0 13 13 18 8 2 8 1 4 3 7 4 4 6 1 5 7 7 3 1 2 7 8 8 10 t 0 0 50 47 17 41 13 14 78 14 23 16 97 10 10 101 8 90 11 29 18 19 103 13 58 45

oligos_6nt_test_vs_ctrl_m5_shift2 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/7; ncol2=24; w=0; offset=0; strand=D; shift=2; score= 1; --wwAhAAwAAATAATAtAAAATAww ; cor=; Ncor= a 0 0 54 57 93 42 101 108 34 110 98 107 26 114 115 27 119 28 117 97 111 110 21 108 47 56 c 0 0 18 18 7 44 19 5 22 7 11 5 8 7 4 6 3 10 0 6 5 4 4 6 22 24 g 0 0 13 13 18 8 2 8 1 4 3 7 4 4 6 1 5 7 7 3 1 2 7 8 8 10 t 0 0 50 47 17 41 13 14 78 14 23 16 97 10 10 101 8 90 11 29 18 19 103 13 58 45

oligos_6nt_test_vs_ctrl_m2_shift2 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m2; m=2/7; ncol2=24; w=0; offset=0; strand=D; shift=2; score=0.736108; --wwwTTwAAAATAATATAAAwAtww ; cor=; Ncor= a 0 0 85 62 56 45 39 140 158 156 158 165 41 157 153 35 161 32 171 162 166 54 144 49 84 69 c 0 0 22 30 10 11 17 5 13 8 6 9 5 11 12 15 11 9 8 2 5 10 16 13 29 38 g 0 0 30 23 22 8 8 10 6 5 3 7 7 16 8 6 10 12 3 7 9 8 14 9 27 25 t 0 0 70 92 119 143 143 52 30 38 40 26 154 23 34 151 25 154 25 36 27 135 33 136 67 75

oligos_6nt_test_vs_ctrl_m4_shift4 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4; m=3/7; ncol2=24; w=0; offset=2; strand=D; shift=4; score=0.690261; ----awAkAAAtAAATATAAAAwAha ; cor=; Ncor= a 0 0 0 0 80 66 118 38 126 117 136 33 128 112 139 23 133 29 132 119 128 137 40 130 58 102 c 0 0 0 0 23 28 15 14 9 12 5 9 3 10 5 13 5 8 4 3 2 5 7 3 42 11 g 0 0 0 0 20 15 6 47 5 6 6 10 6 0 5 11 5 11 6 8 4 2 5 7 8 7 t 0 0 0 0 35 49 19 59 18 23 11 106 21 36 9 111 15 110 16 28 24 14 106 18 50 38

oligos_7nt_test_vs_ctrl_m1_shift3 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1; m=4/7; ncol2=22; w=0; offset=1; strand=D; shift=3; score=0.676919; ---wwtAAAAATwAAAATAAAwwww- ; cor=; Ncor= a 0 0 0 126 138 50 239 236 242 235 253 57 97 235 239 253 263 40 251 238 233 80 154 108 137 0 c 0 0 0 33 29 25 20 12 15 16 9 16 13 13 10 10 8 14 15 12 14 12 21 50 35 0 g 0 0 0 32 42 26 13 14 6 8 13 19 12 14 11 11 11 20 11 8 7 18 46 39 26 0 t 0 0 0 113 95 203 32 42 41 45 29 212 182 42 44 30 22 230 27 46 50 194 83 107 106 0

oligos_7nt_test_vs_ctrl_m2_shift3 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2; m=5/7; ncol2=20; w=0; offset=1; strand=D; shift=3; score=0.591284; ---wwdAATATAAAATAAAtwww--- ; cor=; Ncor= a 0 0 0 151 153 97 256 286 50 283 48 307 276 290 305 39 312 266 259 75 170 107 158 0 0 0 c 0 0 0 57 29 32 22 14 19 15 14 9 21 12 12 11 5 21 30 32 40 55 42 0 0 0 g 0 0 0 52 47 131 20 19 23 20 19 14 15 7 7 13 11 14 23 10 41 67 66 0 0 0 t 0 0 0 95 126 95 57 36 263 37 274 25 43 46 31 292 27 54 43 238 104 126 89 0 0 0

oligos_6nt_test_vs_ctrl_m1_shift6 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1; m=6/7; ncol2=24; w=0; offset=4; strand=D; shift=6; score=0.511528; ------wwwTAAAAATAtAAAtAAAA ; cor=; Ncor= a 0 0 0 0 0 0 80 73 57 34 148 135 146 142 147 44 146 34 150 137 148 35 142 145 150 125 c 0 0 0 0 0 0 22 21 10 9 7 15 8 5 11 5 6 16 9 11 6 9 8 8 3 6 g 0 0 0 0 0 0 15 22 7 10 3 7 3 3 5 6 12 8 4 5 2 14 8 4 8 12 t 0 0 0 0 0 0 64 65 107 128 23 24 24 31 18 126 17 123 18 28 25 123 23 24 20 38

oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m4; m=7/7; ncol2=16; w=-2; offset=-2; strand=D; shift=0; score=0.41989; wwTAAAAATAAATwww---------- ; cor=; Ncor= a 324 356 109 737 742 781 751 782 98 770 694 735 168 381 296 377 0 0 0 0 0 0 0 0 0 0 c 116 98 41 40 29 19 34 23 40 28 51 38 46 104 150 130 0 0 0 0 0 0 0 0 0 0 g 105 132 46 32 28 21 24 25 54 26 33 38 44 147 115 128 0 0 0 0 0 0 0 0 0 0 t 340 299 689 76 86 64 76 55 693 61 107 74 627 253 324 250 0 0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m1_shift4 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift4 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=24; shift=4; ncol=28; ----wwwTAAAAATAtAAAtAAAAtwww ; Alignment reference a 0 0 0 0 80 73 57 34 148 135 146 142 147 44 146 34 150 137 148 35 142 145 150 125 42 48 82 61 c 0 0 0 0 22 21 10 9 7 15 8 5 11 5 6 16 9 11 6 9 8 8 3 6 18 13 28 25 g 0 0 0 0 15 22 7 10 3 7 3 3 5 6 12 8 4 5 2 14 8 4 8 12 10 13 25 15 t 0 0 0 0 64 65 107 128 23 24 24 31 18 126 17 123 18 28 25 123 23 24 20 38 111 107 46 80

oligos_6nt_test_vs_ctrl_m1_shift4 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/7; ncol2=24; w=0; offset=0; strand=D; shift=4; score= 1; ----wwwTAAAAATAtAAAtAAAAtwww ; cor=; Ncor= a 0 0 0 0 80 73 57 34 148 135 146 142 147 44 146 34 150 137 148 35 142 145 150 125 42 48 82 61 c 0 0 0 0 22 21 10 9 7 15 8 5 11 5 6 16 9 11 6 9 8 8 3 6 18 13 28 25 g 0 0 0 0 15 22 7 10 3 7 3 3 5 6 12 8 4 5 2 14 8 4 8 12 10 13 25 15 t 0 0 0 0 64 65 107 128 23 24 24 31 18 126 17 123 18 28 25 123 23 24 20 38 111 107 46 80

oligos_7nt_test_vs_ctrl_m1_shift5 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=2/7; ncol2=22; w=0; offset=1; strand=D; shift=5; score=0.785236; -----wwtAAAAATwAAAATAAAwwww- ; cor=; Ncor= a 0 0 0 0 0 126 138 50 239 236 242 235 253 57 97 235 239 253 263 40 251 238 233 80 154 108 137 0 c 0 0 0 0 0 33 29 25 20 12 15 16 9 16 13 13 10 10 8 14 15 12 14 12 21 50 35 0 g 0 0 0 0 0 32 42 26 13 14 6 8 13 19 12 14 11 11 11 20 11 8 7 18 46 39 26 0 t 0 0 0 0 0 113 95 203 32 42 41 45 29 212 182 42 44 30 22 230 27 46 50 194 83 107 106 0

oligos_6nt_test_vs_ctrl_m4_shift4 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=3/7; ncol2=24; w=0; offset=0; strand=D; shift=4; score=0.723349; ----awAkAAAtAAATATAAAAwAhaww ; cor=; Ncor= a 0 0 0 0 80 66 118 38 126 117 136 33 128 112 139 23 133 29 132 119 128 137 40 130 58 102 78 62 c 0 0 0 0 23 28 15 14 9 12 5 9 3 10 5 13 5 8 4 3 2 5 7 3 42 11 10 24 g 0 0 0 0 20 15 6 47 5 6 6 10 6 0 5 11 5 11 6 8 4 2 5 7 8 7 7 18 t 0 0 0 0 35 49 19 59 18 23 11 106 21 36 9 111 15 110 16 28 24 14 106 18 50 38 63 54

oligos_6nt_test_vs_ctrl_m2_shift3 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=4/7; ncol2=24; w=-1; offset=-1; strand=D; shift=3; score=0.662882; ---wwwTTwAAAATAATATAAAwAtww- ; cor=; Ncor= a 0 0 0 85 62 56 45 39 140 158 156 158 165 41 157 153 35 161 32 171 162 166 54 144 49 84 69 0 c 0 0 0 22 30 10 11 17 5 13 8 6 9 5 11 12 15 11 9 8 2 5 10 16 13 29 38 0 g 0 0 0 30 23 22 8 8 10 6 5 3 7 7 16 8 6 10 12 3 7 9 8 14 9 27 25 0 t 0 0 0 70 92 119 143 143 52 30 38 40 26 154 23 34 151 25 154 25 36 27 135 33 136 67 75 0

oligos_7nt_test_vs_ctrl_m2_shift8 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=5/7; ncol2=20; w=0; offset=4; strand=D; shift=8; score=0.642964; --------wwdAATATAAAATAAAtwww ; cor=; Ncor= a 0 0 0 0 0 0 0 0 151 153 97 256 286 50 283 48 307 276 290 305 39 312 266 259 75 170 107 158 c 0 0 0 0 0 0 0 0 57 29 32 22 14 19 15 14 9 21 12 12 11 5 21 30 32 40 55 42 g 0 0 0 0 0 0 0 0 52 47 131 20 19 23 20 19 14 15 7 7 13 11 14 23 10 41 67 66 t 0 0 0 0 0 0 0 0 95 126 95 57 36 263 37 274 25 43 46 31 292 27 54 43 238 104 126 89

oligos_7nt_test_vs_ctrl_m4_shift5 (oligos_7nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4; m=6/7; ncol2=16; w=0; offset=1; strand=D; shift=5; score=0.54167; -----wwTAAAAATAAATwww------- ; cor=; Ncor= a 0 0 0 0 0 324 356 109 737 742 781 751 782 98 770 694 735 168 381 296 377 0 0 0 0 0 0 0 c 0 0 0 0 0 116 98 41 40 29 19 34 23 40 28 51 38 46 104 150 130 0 0 0 0 0 0 0 g 0 0 0 0 0 105 132 46 32 28 21 24 25 54 26 33 38 44 147 115 128 0 0 0 0 0 0 0 t 0 0 0 0 0 340 299 689 76 86 64 76 55 693 61 107 74 627 253 324 250 0 0 0 0 0 0 0

oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5; m=7/7; ncol2=24; w=-4; offset=-4; strand=D; shift=0; score=0.511528; wwAhAAwAAATAATAtAAAATAww---- ; cor=; Ncor= a 54 57 93 42 101 108 34 110 98 107 26 114 115 27 119 28 117 97 111 110 21 108 47 56 0 0 0 0 c 18 18 7 44 19 5 22 7 11 5 8 7 4 6 3 10 0 6 5 4 4 6 22 24 0 0 0 0 g 13 13 18 8 2 8 1 4 3 7 4 4 6 1 5 7 7 3 1 2 7 8 8 10 0 0 0 0 t 50 47 17 41 13 14 78 14 23 16 97 10 10 101 8 90 11 29 18 19 103 13 58 45 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m5_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=13; shift=0; ncol=13; wwkAATATAATww ; Alignment reference a 145 160 63 339 358 13 399 23 365 339 29 156 148 c 57 41 19 5 16 4 6 11 12 19 14 83 69 g 80 80 226 13 11 12 8 10 19 19 5 67 59 t 138 139 112 63 35 391 7 376 24 43 372 114 144

oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/2; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; wwkAATATAATww ; cor=; Ncor= a 145 160 63 339 358 13 399 23 365 339 29 156 148 c 57 41 19 5 16 4 6 11 12 19 14 83 69 g 80 80 226 13 11 12 8 10 19 19 5 67 59 t 138 139 112 63 35 391 7 376 24 43 372 114 144

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2; m=2/2; ncol2=20; w=0; offset=0; strand=D; shift=0; score=0.504647; wwdAATATAAAAT ; cor=; Ncor= a 151 153 97 256 286 50 283 48 307 276 290 305 39 c 57 29 32 22 14 19 15 14 9 21 12 12 11 g 52 47 131 20 19 23 20 19 14 15 7 7 13 t 95 126 95 57 36 263 37 274 25 43 46 31 292

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m2_shift3 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift3 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=24; shift=3; ncol=27; ---wwwTTwAAAATAATATAAAwAtww ; Alignment reference a 0 0 0 85 62 56 45 39 140 158 156 158 165 41 157 153 35 161 32 171 162 166 54 144 49 84 69 c 0 0 0 22 30 10 11 17 5 13 8 6 9 5 11 12 15 11 9 8 2 5 10 16 13 29 38 g 0 0 0 30 23 22 8 8 10 6 5 3 7 7 16 8 6 10 12 3 7 9 8 14 9 27 25 t 0 0 0 70 92 119 143 143 52 30 38 40 26 154 23 34 151 25 154 25 36 27 135 33 136 67 75

oligos_6nt_test_vs_ctrl_m2_shift3 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/8; ncol2=24; w=0; offset=0; strand=D; shift=3; score= 1; ---wwwTTwAAAATAATATAAAwAtww ; cor=; Ncor= a 0 0 0 85 62 56 45 39 140 158 156 158 165 41 157 153 35 161 32 171 162 166 54 144 49 84 69 c 0 0 0 22 30 10 11 17 5 13 8 6 9 5 11 12 15 11 9 8 2 5 10 16 13 29 38 g 0 0 0 30 23 22 8 8 10 6 5 3 7 7 16 8 6 10 12 3 7 9 8 14 9 27 25 t 0 0 0 70 92 119 143 143 52 30 38 40 26 154 23 34 151 25 154 25 36 27 135 33 136 67 75

oligos_6nt_test_vs_ctrl_m5_shift3 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5; m=2/8; ncol2=24; w=0; offset=0; strand=D; shift=3; score=0.736108; ---wwAhAAwAAATAATAtAAAATAww ; cor=; Ncor= a 0 0 0 54 57 93 42 101 108 34 110 98 107 26 114 115 27 119 28 117 97 111 110 21 108 47 56 c 0 0 0 18 18 7 44 19 5 22 7 11 5 8 7 4 6 3 10 0 6 5 4 4 6 22 24 g 0 0 0 13 13 18 8 2 8 1 4 3 7 4 4 6 1 5 7 7 3 1 2 7 8 8 10 t 0 0 0 50 47 17 41 13 14 78 14 23 16 97 10 10 101 8 90 11 29 18 19 103 13 58 45

oligos_7nt_test_vs_ctrl_m1_shift4 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=3/8; ncol2=22; w=0; offset=1; strand=D; shift=4; score=0.733402; ----wwtAAAAATwAAAATAAAwwww- ; cor=; Ncor= a 0 0 0 0 126 138 50 239 236 242 235 253 57 97 235 239 253 263 40 251 238 233 80 154 108 137 0 c 0 0 0 0 33 29 25 20 12 15 16 9 16 13 13 10 10 8 14 15 12 14 12 21 50 35 0 g 0 0 0 0 32 42 26 13 14 6 8 13 19 12 14 11 11 11 20 11 8 7 18 46 39 26 0 t 0 0 0 0 113 95 203 32 42 41 45 29 212 182 42 44 30 22 230 27 46 50 194 83 107 106 0

oligos_7nt_test_vs_ctrl_m2_shift6 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=4/8; ncol2=20; w=0; offset=3; strand=D; shift=6; score=0.667688; ------wwdAATATAAAATAAAtwww- ; cor=; Ncor= a 0 0 0 0 0 0 151 153 97 256 286 50 283 48 307 276 290 305 39 312 266 259 75 170 107 158 0 c 0 0 0 0 0 0 57 29 32 22 14 19 15 14 9 21 12 12 11 5 21 30 32 40 55 42 0 g 0 0 0 0 0 0 52 47 131 20 19 23 20 19 14 15 7 7 13 11 14 23 10 41 67 66 0 t 0 0 0 0 0 0 95 126 95 57 36 263 37 274 25 43 46 31 292 27 54 43 238 104 126 89 0

oligos_6nt_test_vs_ctrl_m1_shift4 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=5/8; ncol2=24; w=0; offset=1; strand=D; shift=4; score=0.662882; ----wwwTAAAAATAtAAAtAAAAtww ; cor=; Ncor= a 0 0 0 0 80 73 57 34 148 135 146 142 147 44 146 34 150 137 148 35 142 145 150 125 42 48 82 c 0 0 0 0 22 21 10 9 7 15 8 5 11 5 6 16 9 11 6 9 8 8 3 6 18 13 28 g 0 0 0 0 15 22 7 10 3 7 3 3 5 6 12 8 4 5 2 14 8 4 8 12 10 13 25 t 0 0 0 0 64 65 107 128 23 24 24 31 18 126 17 123 18 28 25 123 23 24 20 38 111 107 46

oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4; m=6/8; ncol2=24; w=-3; offset=-3; strand=D; shift=0; score=0.55988; awAkAAAtAAATATAAAAwAhaww--- ; cor=; Ncor= a 80 66 118 38 126 117 136 33 128 112 139 23 133 29 132 119 128 137 40 130 58 102 78 62 0 0 0 c 23 28 15 14 9 12 5 9 3 10 5 13 5 8 4 3 2 5 7 3 42 11 10 24 0 0 0 g 20 15 6 47 5 6 6 10 6 0 5 11 5 11 6 8 4 2 5 7 8 7 7 18 0 0 0 t 35 49 19 59 18 23 11 106 21 36 9 111 15 110 16 28 24 14 106 18 50 38 63 54 0 0 0

oligos_7nt_test_vs_ctrl_m4_shift5 (oligos_7nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4; m=7/8; ncol2=16; w=0; offset=2; strand=D; shift=5; score=0.492625; -----wwTAAAAATAAATwww------ ; cor=; Ncor= a 0 0 0 0 0 324 356 109 737 742 781 751 782 98 770 694 735 168 381 296 377 0 0 0 0 0 0 c 0 0 0 0 0 116 98 41 40 29 19 34 23 40 28 51 38 46 104 150 130 0 0 0 0 0 0 g 0 0 0 0 0 105 132 46 32 28 21 24 25 54 26 33 38 44 147 115 128 0 0 0 0 0 0 t 0 0 0 0 0 340 299 689 76 86 64 76 55 693 61 107 74 627 253 324 250 0 0 0 0 0 0

oligos_7nt_test_vs_ctrl_m3_shift6 (oligos_7nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m3; m=8/8; ncol2=14; w=0; offset=3; strand=D; shift=6; score=0.419606; ------wwAACAATAAtwww------- ; cor=; Ncor= a 0 0 0 0 0 0 181 168 409 442 49 435 428 34 437 414 91 128 192 156 0 0 0 0 0 0 0 c 0 0 0 0 0 0 71 87 15 11 357 10 12 13 5 10 44 44 68 94 0 0 0 0 0 0 0 g 0 0 0 0 0 0 91 69 14 11 15 6 15 13 8 11 46 82 84 61 0 0 0 0 0 0 0 t 0 0 0 0 0 0 135 154 40 14 57 27 23 418 28 43 297 224 134 167 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m4_shift2 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift2 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=24; shift=2; ncol=26; --awAkAAAtAAATATAAAAwAhaww ; Alignment reference a 0 0 80 66 118 38 126 117 136 33 128 112 139 23 133 29 132 119 128 137 40 130 58 102 78 62 c 0 0 23 28 15 14 9 12 5 9 3 10 5 13 5 8 4 3 2 5 7 3 42 11 10 24 g 0 0 20 15 6 47 5 6 6 10 6 0 5 11 5 11 6 8 4 2 5 7 8 7 7 18 t 0 0 35 49 19 59 18 23 11 106 21 36 9 111 15 110 16 28 24 14 106 18 50 38 63 54

oligos_6nt_test_vs_ctrl_m4_shift2 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/7; ncol2=24; w=0; offset=0; strand=D; shift=2; score= 1; --awAkAAAtAAATATAAAAwAhaww ; cor=; Ncor= a 0 0 80 66 118 38 126 117 136 33 128 112 139 23 133 29 132 119 128 137 40 130 58 102 78 62 c 0 0 23 28 15 14 9 12 5 9 3 10 5 13 5 8 4 3 2 5 7 3 42 11 10 24 g 0 0 20 15 6 47 5 6 6 10 6 0 5 11 5 11 6 8 4 2 5 7 8 7 7 18 t 0 0 35 49 19 59 18 23 11 106 21 36 9 111 15 110 16 28 24 14 106 18 50 38 63 54

oligos_6nt_test_vs_ctrl_m1_shift2 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1; m=2/7; ncol2=24; w=0; offset=0; strand=D; shift=2; score=0.723349; --wwwTAAAAATAtAAAtAAAAtwww ; cor=; Ncor= a 0 0 80 73 57 34 148 135 146 142 147 44 146 34 150 137 148 35 142 145 150 125 42 48 82 61 c 0 0 22 21 10 9 7 15 8 5 11 5 6 16 9 11 6 9 8 8 3 6 18 13 28 25 g 0 0 15 22 7 10 3 7 3 3 5 6 12 8 4 5 2 14 8 4 8 12 10 13 25 15 t 0 0 64 65 107 128 23 24 24 31 18 126 17 123 18 28 25 123 23 24 20 38 111 107 46 80

oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m5; m=3/7; ncol2=24; w=-2; offset=-2; strand=D; shift=0; score=0.690261; wwAhAAwAAATAATAtAAAATAww-- ; cor=; Ncor= a 54 57 93 42 101 108 34 110 98 107 26 114 115 27 119 28 117 97 111 110 21 108 47 56 0 0 c 18 18 7 44 19 5 22 7 11 5 8 7 4 6 3 10 0 6 5 4 4 6 22 24 0 0 g 13 13 18 8 2 8 1 4 3 7 4 4 6 1 5 7 7 3 1 2 7 8 8 10 0 0 t 50 47 17 41 13 14 78 14 23 16 97 10 10 101 8 90 11 29 18 19 103 13 58 45 0 0

oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1; m=4/7; ncol2=22; w=-1; offset=-1; strand=D; shift=1; score=0.637993; -wwtAAAAATwAAAATAAAwwww--- ; cor=; Ncor= a 0 126 138 50 239 236 242 235 253 57 97 235 239 253 263 40 251 238 233 80 154 108 137 0 0 0 c 0 33 29 25 20 12 15 16 9 16 13 13 10 10 8 14 15 12 14 12 21 50 35 0 0 0 g 0 32 42 26 13 14 6 8 13 19 12 14 11 11 11 20 11 8 7 18 46 39 26 0 0 0 t 0 113 95 203 32 42 41 45 29 212 182 42 44 30 22 230 27 46 50 194 83 107 106 0 0 0

oligos_7nt_test_vs_ctrl_m2_shift8 (oligos_7nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2; m=5/7; ncol2=20; w=0; offset=6; strand=D; shift=8; score=0.614586; --------wwdAATATAAAATAAAtw ; cor=; Ncor= a 0 0 0 0 0 0 0 0 151 153 97 256 286 50 283 48 307 276 290 305 39 312 266 259 75 170 c 0 0 0 0 0 0 0 0 57 29 32 22 14 19 15 14 9 21 12 12 11 5 21 30 32 40 g 0 0 0 0 0 0 0 0 52 47 131 20 19 23 20 19 14 15 7 7 13 11 14 23 10 41 t 0 0 0 0 0 0 0 0 95 126 95 57 36 263 37 274 25 43 46 31 292 27 54 43 238 104

oligos_6nt_test_vs_ctrl_m2_shift5 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2; m=6/7; ncol2=24; w=0; offset=3; strand=D; shift=5; score=0.55988; -----wwwTTwAAAATAATATAAAwA ; cor=; Ncor= a 0 0 0 0 0 85 62 56 45 39 140 158 156 158 165 41 157 153 35 161 32 171 162 166 54 144 c 0 0 0 0 0 22 30 10 11 17 5 13 8 6 9 5 11 12 15 11 9 8 2 5 10 16 g 0 0 0 0 0 30 23 22 8 8 10 6 5 3 7 7 16 8 6 10 12 3 7 9 8 14 t 0 0 0 0 0 70 92 119 143 143 52 30 38 40 26 154 23 34 151 25 154 25 36 27 135 33

oligos_7nt_test_vs_ctrl_m4_shift1 (oligos_7nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=7/7; ncol2=16; w=-1; offset=-1; strand=D; shift=1; score=0.50511; -wwTAAAAATAAATwww--------- ; cor=; Ncor= a 0 324 356 109 737 742 781 751 782 98 770 694 735 168 381 296 377 0 0 0 0 0 0 0 0 0 c 0 116 98 41 40 29 19 34 23 40 28 51 38 46 104 150 130 0 0 0 0 0 0 0 0 0 g 0 105 132 46 32 28 21 24 25 54 26 33 38 44 147 115 128 0 0 0 0 0 0 0 0 0 t 0 340 299 689 76 86 64 76 55 693 61 107 74 627 253 324 250 0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m3_shift7 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift7 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=14; shift=7; ncol=21; -------wwAACAATAAtwww ; Alignment reference a 0 0 0 0 0 0 0 181 168 409 442 49 435 428 34 437 414 91 128 192 156 c 0 0 0 0 0 0 0 71 87 15 11 357 10 12 13 5 10 44 44 68 94 g 0 0 0 0 0 0 0 91 69 14 11 15 6 15 13 8 11 46 82 84 61 t 0 0 0 0 0 0 0 135 154 40 14 57 27 23 418 28 43 297 224 134 167

oligos_7nt_test_vs_ctrl_m3_shift7 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/4; ncol2=14; w=0; offset=0; strand=D; shift=7; score= 1; -------wwAACAATAAtwww ; cor=; Ncor= a 0 0 0 0 0 0 0 181 168 409 442 49 435 428 34 437 414 91 128 192 156 c 0 0 0 0 0 0 0 71 87 15 11 357 10 12 13 5 10 44 44 68 94 g 0 0 0 0 0 0 0 91 69 14 11 15 6 15 13 8 11 46 82 84 61 t 0 0 0 0 0 0 0 135 154 40 14 57 27 23 418 28 43 297 224 134 167

oligos_7nt_test_vs_ctrl_m4_shift6 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4; m=2/4; ncol2=16; w=-1; offset=-1; strand=D; shift=6; score=0.670254; ------wwTAAAAATAAATww ; cor=; Ncor= a 0 0 0 0 0 0 324 356 109 737 742 781 751 782 98 770 694 735 168 381 296 c 0 0 0 0 0 0 116 98 41 40 29 19 34 23 40 28 51 38 46 104 150 g 0 0 0 0 0 0 105 132 46 32 28 21 24 25 54 26 33 38 44 147 115 t 0 0 0 0 0 0 340 299 689 76 86 64 76 55 693 61 107 74 627 253 324

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m1; m=3/4; ncol2=22; w=-7; offset=-7; strand=D; shift=0; score=0.449676; wwtAAAAATwAAAATAAAwww ; cor=; Ncor= a 126 138 50 239 236 242 235 253 57 97 235 239 253 263 40 251 238 233 80 154 108 c 33 29 25 20 12 15 16 9 16 13 13 10 10 8 14 15 12 14 12 21 50 g 32 42 26 13 14 6 8 13 19 12 14 11 11 11 20 11 8 7 18 46 39 t 113 95 203 32 42 41 45 29 212 182 42 44 30 22 230 27 46 50 194 83 107

oligos_6nt_test_vs_ctrl_m2_shift4 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m2; m=4/4; ncol2=24; w=-3; offset=-3; strand=D; shift=4; score=0.419606; ----wwwTTwAAAATAATATA ; cor=; Ncor= a 0 0 0 0 85 62 56 45 39 140 158 156 158 165 41 157 153 35 161 32 171 c 0 0 0 0 22 30 10 11 17 5 13 8 6 9 5 11 12 15 11 9 8 g 0 0 0 0 30 23 22 8 8 10 6 5 3 7 7 16 8 6 10 12 3 t 0 0 0 0 70 92 119 143 143 52 30 38 40 26 154 23 34 151 25 154 25

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m2_shift6 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift6 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=20; shift=6; ncol=26; ------wwdAATATAAAATAAAtwww ; Alignment reference a 0 0 0 0 0 0 151 153 97 256 286 50 283 48 307 276 290 305 39 312 266 259 75 170 107 158 c 0 0 0 0 0 0 57 29 32 22 14 19 15 14 9 21 12 12 11 5 21 30 32 40 55 42 g 0 0 0 0 0 0 52 47 131 20 19 23 20 19 14 15 7 7 13 11 14 23 10 41 67 66 t 0 0 0 0 0 0 95 126 95 57 36 263 37 274 25 43 46 31 292 27 54 43 238 104 126 89

oligos_7nt_test_vs_ctrl_m2_shift6 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/8; ncol2=20; w=0; offset=0; strand=D; shift=6; score= 1; ------wwdAATATAAAATAAAtwww ; cor=; Ncor= a 0 0 0 0 0 0 151 153 97 256 286 50 283 48 307 276 290 305 39 312 266 259 75 170 107 158 c 0 0 0 0 0 0 57 29 32 22 14 19 15 14 9 21 12 12 11 5 21 30 32 40 55 42 g 0 0 0 0 0 0 52 47 131 20 19 23 20 19 14 15 7 7 13 11 14 23 10 41 67 66 t 0 0 0 0 0 0 95 126 95 57 36 263 37 274 25 43 46 31 292 27 54 43 238 104 126 89

oligos_7nt_test_vs_ctrl_m1_shift4 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=2/8; ncol2=22; w=-2; offset=-2; strand=D; shift=4; score=0.719588; ----wwtAAAAATwAAAATAAAwwww ; cor=; Ncor= a 0 0 0 0 126 138 50 239 236 242 235 253 57 97 235 239 253 263 40 251 238 233 80 154 108 137 c 0 0 0 0 33 29 25 20 12 15 16 9 16 13 13 10 10 8 14 15 12 14 12 21 50 35 g 0 0 0 0 32 42 26 13 14 6 8 13 19 12 14 11 11 11 20 11 8 7 18 46 39 26 t 0 0 0 0 113 95 203 32 42 41 45 29 212 182 42 44 30 22 230 27 46 50 194 83 107 106

oligos_6nt_test_vs_ctrl_m2_shift3 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=3/8; ncol2=24; w=-3; offset=-3; strand=D; shift=3; score=0.667688; ---wwwTTwAAAATAATATAAAwAtw ; cor=; Ncor= a 0 0 0 85 62 56 45 39 140 158 156 158 165 41 157 153 35 161 32 171 162 166 54 144 49 84 c 0 0 0 22 30 10 11 17 5 13 8 6 9 5 11 12 15 11 9 8 2 5 10 16 13 29 g 0 0 0 30 23 22 8 8 10 6 5 3 7 7 16 8 6 10 12 3 7 9 8 14 9 27 t 0 0 0 70 92 119 143 143 52 30 38 40 26 154 23 34 151 25 154 25 36 27 135 33 136 67

oligos_6nt_test_vs_ctrl_m1_shift2 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=4/8; ncol2=24; w=-4; offset=-4; strand=D; shift=2; score=0.642964; --wwwTAAAAATAtAAAtAAAAtwww ; cor=; Ncor= a 0 0 80 73 57 34 148 135 146 142 147 44 146 34 150 137 148 35 142 145 150 125 42 48 82 61 c 0 0 22 21 10 9 7 15 8 5 11 5 6 16 9 11 6 9 8 8 3 6 18 13 28 25 g 0 0 15 22 7 10 3 7 3 3 5 6 12 8 4 5 2 14 8 4 8 12 10 13 25 15 t 0 0 64 65 107 128 23 24 24 31 18 126 17 123 18 28 25 123 23 24 20 38 111 107 46 80

oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4; m=5/8; ncol2=24; w=-6; offset=-6; strand=D; shift=0; score=0.614586; awAkAAAtAAATATAAAAwAhaww-- ; cor=; Ncor= a 80 66 118 38 126 117 136 33 128 112 139 23 133 29 132 119 128 137 40 130 58 102 78 62 0 0 c 23 28 15 14 9 12 5 9 3 10 5 13 5 8 4 3 2 5 7 3 42 11 10 24 0 0 g 20 15 6 47 5 6 6 10 6 0 5 11 5 11 6 8 4 2 5 7 8 7 7 18 0 0 t 35 49 19 59 18 23 11 106 21 36 9 111 15 110 16 28 24 14 106 18 50 38 63 54 0 0

oligos_7nt_test_vs_ctrl_m4_shift10 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4; m=6/8; ncol2=16; w=0; offset=4; strand=D; shift=10; score=0.613683; ----------wwTAAAAATAAATwww ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 324 356 109 737 742 781 751 782 98 770 694 735 168 381 296 377 c 0 0 0 0 0 0 0 0 0 0 116 98 41 40 29 19 34 23 40 28 51 38 46 104 150 130 g 0 0 0 0 0 0 0 0 0 0 105 132 46 32 28 21 24 25 54 26 33 38 44 147 115 128 t 0 0 0 0 0 0 0 0 0 0 340 299 689 76 86 64 76 55 693 61 107 74 627 253 324 250

oligos_6nt_test_vs_ctrl_m5_shift5 (oligos_6nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5; m=7/8; ncol2=24; w=-1; offset=-1; strand=D; shift=5; score=0.591284; -----wwAhAAwAAATAATAtAAAAT ; cor=; Ncor= a 0 0 0 0 0 54 57 93 42 101 108 34 110 98 107 26 114 115 27 119 28 117 97 111 110 21 c 0 0 0 0 0 18 18 7 44 19 5 22 7 11 5 8 7 4 6 3 10 0 6 5 4 4 g 0 0 0 0 0 13 13 18 8 2 8 1 4 3 7 4 4 6 1 5 7 7 3 1 2 7 t 0 0 0 0 0 50 47 17 41 13 14 78 14 23 16 97 10 10 101 8 90 11 29 18 19 103

oligos_7nt_test_vs_ctrl_m5_shift6 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m5; m=8/8; ncol2=13; w=0; offset=0; strand=D; shift=6; score=0.504647; ------wwkAATATAATww------- ; cor=; Ncor= a 0 0 0 0 0 0 145 160 63 339 358 13 399 23 365 339 29 156 148 0 0 0 0 0 0 0 c 0 0 0 0 0 0 57 41 19 5 16 4 6 11 12 19 14 83 69 0 0 0 0 0 0 0 g 0 0 0 0 0 0 80 80 226 13 11 12 8 10 19 19 5 67 59 0 0 0 0 0 0 0 t 0 0 0 0 0 0 138 139 112 63 35 391 7 376 24 43 372 114 144 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m4_shift6 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=16; shift=6; ncol=22; ------wwTAAAAATAAATwww ; Alignment reference a 0 0 0 0 0 0 324 356 109 737 742 781 751 782 98 770 694 735 168 381 296 377 c 0 0 0 0 0 0 116 98 41 40 29 19 34 23 40 28 51 38 46 104 150 130 g 0 0 0 0 0 0 105 132 46 32 28 21 24 25 54 26 33 38 44 147 115 128 t 0 0 0 0 0 0 340 299 689 76 86 64 76 55 693 61 107 74 627 253 324 250
oligos_7nt_test_vs_ctrl_m4_shift6 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/9; ncol2=16; w=0; offset=0; strand=D; shift=6; score= 1; ------wwTAAAAATAAATwww ; cor=; Ncor= a 0 0 0 0 0 0 324 356 109 737 742 781 751 782 98 770 694 735 168 381 296 377 c 0 0 0 0 0 0 116 98 41 40 29 19 34 23 40 28 51 38 46 104 150 130 g 0 0 0 0 0 0 105 132 46 32 28 21 24 25 54 26 33 38 44 147 115 128 t 0 0 0 0 0 0 340 299 689 76 86 64 76 55 693 61 107 74 627 253 324 250
oligos_7nt_test_vs_ctrl_m3_shift7 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3; m=2/9; ncol2=14; w=0; offset=1; strand=D; shift=7; score=0.670254; -------wwAACAATAAtwww- ; cor=; Ncor= a 0 0 0 0 0 0 0 181 168 409 442 49 435 428 34 437 414 91 128 192 156 0 c 0 0 0 0 0 0 0 71 87 15 11 357 10 12 13 5 10 44 44 68 94 0 g 0 0 0 0 0 0 0 91 69 14 11 15 6 15 13 8 11 46 82 84 61 0 t 0 0 0 0 0 0 0 135 154 40 14 57 27 23 418 28 43 297 224 134 167 0
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1; m=3/9; ncol2=22; w=-6; offset=-6; strand=D; shift=0; score=0.648731; wwtAAAAATwAAAATAAAwwww ; cor=; Ncor= a 126 138 50 239 236 242 235 253 57 97 235 239 253 263 40 251 238 233 80 154 108 137 c 33 29 25 20 12 15 16 9 16 13 13 10 10 8 14 15 12 14 12 21 50 35 g 32 42 26 13 14 6 8 13 19 12 14 11 11 11 20 11 8 7 18 46 39 26 t 113 95 203 32 42 41 45 29 212 182 42 44 30 22 230 27 46 50 194 83 107 106
oligos_7nt_test_vs_ctrl_m2_shift2 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2; m=4/9; ncol2=20; w=-4; offset=-4; strand=D; shift=2; score=0.613683; --wwdAATATAAAATAAAtwww ; cor=; Ncor= a 0 0 151 153 97 256 286 50 283 48 307 276 290 305 39 312 266 259 75 170 107 158 c 0 0 57 29 32 22 14 19 15 14 9 21 12 12 11 5 21 30 32 40 55 42 g 0 0 52 47 131 20 19 23 20 19 14 15 7 7 13 11 14 23 10 41 67 66 t 0 0 95 126 95 57 36 263 37 274 25 43 46 31 292 27 54 43 238 104 126 89
oligos_6nt_test_vs_ctrl_m1_shift5 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1; m=5/9; ncol2=24; w=-1; offset=-1; strand=D; shift=5; score=0.54167; -----wwwTAAAAATAtAAAtA ; cor=; Ncor= a 0 0 0 0 0 80 73 57 34 148 135 146 142 147 44 146 34 150 137 148 35 142 c 0 0 0 0 0 22 21 10 9 7 15 8 5 11 5 6 16 9 11 6 9 8 g 0 0 0 0 0 15 22 7 10 3 7 3 3 5 6 12 8 4 5 2 14 8 t 0 0 0 0 0 64 65 107 128 23 24 24 31 18 126 17 123 18 28 25 123 23
oligos_6nt_test_vs_ctrl_m3_rc_shift4 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m3_rc; m=6/9; ncol2=24; w=-2; offset=-2; strand=R; shift=4; score=0.538689; ----wwwtTAAAAATTAATTTT ; cor=; Ncor= a 0 0 0 0 61 45 78 30 20 104 105 112 106 99 11 25 102 110 24 18 14 22 c 0 0 0 0 6 12 9 9 8 5 6 6 8 3 11 6 7 7 10 4 5 12 g 0 0 0 0 20 17 8 5 5 8 8 5 5 9 14 9 8 8 3 5 10 4 t 0 0 0 0 47 60 39 90 101 17 15 11 15 23 98 94 17 9 97 107 105 96
oligos_6nt_test_vs_ctrl_m4_shift7 (oligos_6nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=7/9; ncol2=24; w=0; offset=1; strand=D; shift=7; score=0.50511; -------awAkAAAtAAATATA ; cor=; Ncor= a 0 0 0 0 0 0 0 80 66 118 38 126 117 136 33 128 112 139 23 133 29 132 c 0 0 0 0 0 0 0 23 28 15 14 9 12 5 9 3 10 5 13 5 8 4 g 0 0 0 0 0 0 0 20 15 6 47 5 6 6 10 6 0 5 11 5 11 6 t 0 0 0 0 0 0 0 35 49 19 59 18 23 11 106 21 36 9 111 15 110 16
oligos_6nt_test_vs_ctrl_m2_shift4 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2; m=8/9; ncol2=24; w=-2; offset=-2; strand=D; shift=4; score=0.492625; ----wwwTTwAAAATAATATAA ; cor=; Ncor= a 0 0 0 0 85 62 56 45 39 140 158 156 158 165 41 157 153 35 161 32 171 162 c 0 0 0 0 22 30 10 11 17 5 13 8 6 9 5 11 12 15 11 9 8 2 g 0 0 0 0 30 23 22 8 8 10 6 5 3 7 7 16 8 6 10 12 3 7 t 0 0 0 0 70 92 119 143 143 52 30 38 40 26 154 23 34 151 25 154 25 36
oligos_6nt_test_vs_ctrl_m5_shift8 (oligos_6nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m5; m=9/9; ncol2=24; w=0; offset=2; strand=D; shift=8; score=0.41989; --------wwAhAAwAAATAAT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 54 57 93 42 101 108 34 110 98 107 26 114 115 27 c 0 0 0 0 0 0 0 0 18 18 7 44 19 5 22 7 11 5 8 7 4 6 g 0 0 0 0 0 0 0 0 13 13 18 8 2 8 1 4 3 7 4 4 6 1 t 0 0 0 0 0 0 0 0 50 47 17 41 13 14 78 14 23 16 97 10 10 101

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=22; shift=1; ncol=23; -wwtAAAAATwAAAATAAAwwww ; Alignment reference a 0 126 138 50 239 236 242 235 253 57 97 235 239 253 263 40 251 238 233 80 154 108 137 c 0 33 29 25 20 12 15 16 9 16 13 13 10 10 8 14 15 12 14 12 21 50 35 g 0 32 42 26 13 14 6 8 13 19 12 14 11 11 11 20 11 8 7 18 46 39 26 t 0 113 95 203 32 42 41 45 29 212 182 42 44 30 22 230 27 46 50 194 83 107 106
oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/9; ncol2=22; w=0; offset=0; strand=D; shift=1; score= 1; -wwtAAAAATwAAAATAAAwwww ; cor=; Ncor= a 0 126 138 50 239 236 242 235 253 57 97 235 239 253 263 40 251 238 233 80 154 108 137 c 0 33 29 25 20 12 15 16 9 16 13 13 10 10 8 14 15 12 14 12 21 50 35 g 0 32 42 26 13 14 6 8 13 19 12 14 11 11 11 20 11 8 7 18 46 39 26 t 0 113 95 203 32 42 41 45 29 212 182 42 44 30 22 230 27 46 50 194 83 107 106
oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=2/9; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.785236; wwwTAAAAATAtAAAtAAAAtww ; cor=; Ncor= a 80 73 57 34 148 135 146 142 147 44 146 34 150 137 148 35 142 145 150 125 42 48 82 c 22 21 10 9 7 15 8 5 11 5 6 16 9 11 6 9 8 8 3 6 18 13 28 g 15 22 7 10 3 7 3 3 5 6 12 8 4 5 2 14 8 4 8 12 10 13 25 t 64 65 107 128 23 24 24 31 18 126 17 123 18 28 25 123 23 24 20 38 111 107 46
oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=3/9; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.733402; wwwTTwAAAATAATATAAAwAtw ; cor=; Ncor= a 85 62 56 45 39 140 158 156 158 165 41 157 153 35 161 32 171 162 166 54 144 49 84 c 22 30 10 11 17 5 13 8 6 9 5 11 12 15 11 9 8 2 5 10 16 13 29 g 30 23 22 8 8 10 6 5 3 7 7 16 8 6 10 12 3 7 9 8 14 9 27 t 70 92 119 143 143 52 30 38 40 26 154 23 34 151 25 154 25 36 27 135 33 136 67
oligos_7nt_test_vs_ctrl_m2_shift3 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=4/9; ncol2=20; w=0; offset=2; strand=D; shift=3; score=0.719588; ---wwdAATATAAAATAAAtwww ; cor=; Ncor= a 0 0 0 151 153 97 256 286 50 283 48 307 276 290 305 39 312 266 259 75 170 107 158 c 0 0 0 57 29 32 22 14 19 15 14 9 21 12 12 11 5 21 30 32 40 55 42 g 0 0 0 52 47 131 20 19 23 20 19 14 15 7 7 13 11 14 23 10 41 67 66 t 0 0 0 95 126 95 57 36 263 37 274 25 43 46 31 292 27 54 43 238 104 126 89
oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5; m=5/9; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.676919; wwAhAAwAAATAATAtAAAATAw ; cor=; Ncor= a 54 57 93 42 101 108 34 110 98 107 26 114 115 27 119 28 117 97 111 110 21 108 47 c 18 18 7 44 19 5 22 7 11 5 8 7 4 6 3 10 0 6 5 4 4 6 22 g 13 13 18 8 2 8 1 4 3 7 4 4 6 1 5 7 7 3 1 2 7 8 8 t 50 47 17 41 13 14 78 14 23 16 97 10 10 101 8 90 11 29 18 19 103 13 58
oligos_7nt_test_vs_ctrl_m4_shift7 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4; m=6/9; ncol2=16; w=0; offset=6; strand=D; shift=7; score=0.648731; -------wwTAAAAATAAATwww ; cor=; Ncor= a 0 0 0 0 0 0 0 324 356 109 737 742 781 751 782 98 770 694 735 168 381 296 377 c 0 0 0 0 0 0 0 116 98 41 40 29 19 34 23 40 28 51 38 46 104 150 130 g 0 0 0 0 0 0 0 105 132 46 32 28 21 24 25 54 26 33 38 44 147 115 128 t 0 0 0 0 0 0 0 340 299 689 76 86 64 76 55 693 61 107 74 627 253 324 250
oligos_6nt_test_vs_ctrl_m4_shift2 (oligos_6nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=7/9; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.637993; --awAkAAAtAAATATAAAAwAh ; cor=; Ncor= a 0 0 80 66 118 38 126 117 136 33 128 112 139 23 133 29 132 119 128 137 40 130 58 c 0 0 23 28 15 14 9 12 5 9 3 10 5 13 5 8 4 3 2 5 7 3 42 g 0 0 20 15 6 47 5 6 6 10 6 0 5 11 5 11 6 8 4 2 5 7 8 t 0 0 35 49 19 59 18 23 11 106 21 36 9 111 15 110 16 28 24 14 106 18 50
oligos_6nt_test_vs_ctrl_m3_rc_shift5 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3_rc; m=8/9; ncol2=24; w=0; offset=4; strand=R; shift=5; score=0.450139; -----wwwtTAAAAATTAATTTT ; cor=; Ncor= a 0 0 0 0 0 61 45 78 30 20 104 105 112 106 99 11 25 102 110 24 18 14 22 c 0 0 0 0 0 6 12 9 9 8 5 6 6 8 3 11 6 7 7 10 4 5 12 g 0 0 0 0 0 20 17 8 5 5 8 8 5 5 9 14 9 8 8 3 5 10 4 t 0 0 0 0 0 47 60 39 90 101 17 15 11 15 23 98 94 17 9 97 107 105 96
oligos_7nt_test_vs_ctrl_m3_shift8 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3; m=9/9; ncol2=14; w=0; offset=7; strand=D; shift=8; score=0.449676; --------wwAACAATAAtwww- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 181 168 409 442 49 435 428 34 437 414 91 128 192 156 0 c 0 0 0 0 0 0 0 0 71 87 15 11 357 10 12 13 5 10 44 44 68 94 0 g 0 0 0 0 0 0 0 0 91 69 14 11 15 6 15 13 8 11 46 82 84 61 0 t 0 0 0 0 0 0 0 0 135 154 40 14 57 27 23 418 28 43 297 224 134 167 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=24; shift=0; ncol=24; wwTTTAAAAATTAATTTTTAawww ; Alignment reference a 48 43 23 25 19 105 96 105 107 97 9 17 94 98 23 15 11 15 17 101 90 39 60 47 c 15 17 5 5 8 5 4 10 5 3 8 8 9 14 9 5 5 8 8 5 5 8 17 20 g 18 16 9 2 5 7 12 5 4 10 7 7 6 11 3 8 6 6 5 8 9 9 12 6 t 53 58 97 102 102 17 22 14 18 24 110 102 25 11 99 106 112 105 104 20 30 78 45 61
oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/3; ncol2=24; w=0; offset=0; strand=D; shift=0; score= 1; wwTTTAAAAATTAATTTTTAawww ; cor=; Ncor= a 48 43 23 25 19 105 96 105 107 97 9 17 94 98 23 15 11 15 17 101 90 39 60 47 c 15 17 5 5 8 5 4 10 5 3 8 8 9 14 9 5 5 8 8 5 5 8 17 20 g 18 16 9 2 5 7 12 5 4 10 7 7 6 11 3 8 6 6 5 8 9 9 12 6 t 53 58 97 102 102 17 22 14 18 24 110 102 25 11 99 106 112 105 104 20 30 78 45 61
oligos_7nt_test_vs_ctrl_m4_rc_shift6 (oligos_7nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4_rc; m=2/3; ncol2=16; w=0; offset=6; strand=R; shift=6; score=0.538689; ------wwwATTTATTTTTAww-- ; cor=; Ncor= a 0 0 0 0 0 0 250 324 253 627 74 107 61 693 55 76 64 86 76 689 299 340 0 0 c 0 0 0 0 0 0 128 115 147 44 38 33 26 54 25 24 21 28 32 46 132 105 0 0 g 0 0 0 0 0 0 130 150 104 46 38 51 28 40 23 34 19 29 40 41 98 116 0 0 t 0 0 0 0 0 0 377 296 381 168 735 694 770 98 782 751 781 742 737 109 356 324 0 0
oligos_7nt_test_vs_ctrl_m1_rc_shift6 (oligos_7nt_test_vs_ctrl_m1_rc)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m1_rc; m=3/3; ncol2=22; w=0; offset=6; strand=R; shift=6; score=0.450139; ------wwwwTTTATTTTwATTTT ; cor=; Ncor= a 0 0 0 0 0 0 106 107 83 194 50 46 27 230 22 30 44 42 182 212 29 45 41 42 c 0 0 0 0 0 0 26 39 46 18 7 8 11 20 11 11 11 14 12 19 13 8 6 14 g 0 0 0 0 0 0 35 50 21 12 14 12 15 14 8 10 10 13 13 16 9 16 15 12 t 0 0 0 0 0 0 137 108 154 80 233 238 251 40 263 253 239 235 97 57 253 235 242 236

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m5_shift2 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=24; shift=2; ncol=26; --wwAhAAwAAATAATAtAAAATAww ; Alignment reference a 0 0 54 57 93 42 101 108 34 110 98 107 26 114 115 27 119 28 117 97 111 110 21 108 47 56 c 0 0 18 18 7 44 19 5 22 7 11 5 8 7 4 6 3 10 0 6 5 4 4 6 22 24 g 0 0 13 13 18 8 2 8 1 4 3 7 4 4 6 1 5 7 7 3 1 2 7 8 8 10 t 0 0 50 47 17 41 13 14 78 14 23 16 97 10 10 101 8 90 11 29 18 19 103 13 58 45
oligos_6nt_test_vs_ctrl_m5_shift2 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/7; ncol2=24; w=0; offset=0; strand=D; shift=2; score= 1; --wwAhAAwAAATAATAtAAAATAww ; cor=; Ncor= a 0 0 54 57 93 42 101 108 34 110 98 107 26 114 115 27 119 28 117 97 111 110 21 108 47 56 c 0 0 18 18 7 44 19 5 22 7 11 5 8 7 4 6 3 10 0 6 5 4 4 6 22 24 g 0 0 13 13 18 8 2 8 1 4 3 7 4 4 6 1 5 7 7 3 1 2 7 8 8 10 t 0 0 50 47 17 41 13 14 78 14 23 16 97 10 10 101 8 90 11 29 18 19 103 13 58 45
oligos_6nt_test_vs_ctrl_m2_shift2 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m2; m=2/7; ncol2=24; w=0; offset=0; strand=D; shift=2; score=0.736108; --wwwTTwAAAATAATATAAAwAtww ; cor=; Ncor= a 0 0 85 62 56 45 39 140 158 156 158 165 41 157 153 35 161 32 171 162 166 54 144 49 84 69 c 0 0 22 30 10 11 17 5 13 8 6 9 5 11 12 15 11 9 8 2 5 10 16 13 29 38 g 0 0 30 23 22 8 8 10 6 5 3 7 7 16 8 6 10 12 3 7 9 8 14 9 27 25 t 0 0 70 92 119 143 143 52 30 38 40 26 154 23 34 151 25 154 25 36 27 135 33 136 67 75
oligos_6nt_test_vs_ctrl_m4_shift4 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m4; m=3/7; ncol2=24; w=0; offset=2; strand=D; shift=4; score=0.690261; ----awAkAAAtAAATATAAAAwAha ; cor=; Ncor= a 0 0 0 0 80 66 118 38 126 117 136 33 128 112 139 23 133 29 132 119 128 137 40 130 58 102 c 0 0 0 0 23 28 15 14 9 12 5 9 3 10 5 13 5 8 4 3 2 5 7 3 42 11 g 0 0 0 0 20 15 6 47 5 6 6 10 6 0 5 11 5 11 6 8 4 2 5 7 8 7 t 0 0 0 0 35 49 19 59 18 23 11 106 21 36 9 111 15 110 16 28 24 14 106 18 50 38
oligos_7nt_test_vs_ctrl_m1_shift3 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1; m=4/7; ncol2=22; w=0; offset=1; strand=D; shift=3; score=0.676919; ---wwtAAAAATwAAAATAAAwwww- ; cor=; Ncor= a 0 0 0 126 138 50 239 236 242 235 253 57 97 235 239 253 263 40 251 238 233 80 154 108 137 0 c 0 0 0 33 29 25 20 12 15 16 9 16 13 13 10 10 8 14 15 12 14 12 21 50 35 0 g 0 0 0 32 42 26 13 14 6 8 13 19 12 14 11 11 11 20 11 8 7 18 46 39 26 0 t 0 0 0 113 95 203 32 42 41 45 29 212 182 42 44 30 22 230 27 46 50 194 83 107 106 0
oligos_7nt_test_vs_ctrl_m2_shift3 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2; m=5/7; ncol2=20; w=0; offset=1; strand=D; shift=3; score=0.591284; ---wwdAATATAAAATAAAtwww--- ; cor=; Ncor= a 0 0 0 151 153 97 256 286 50 283 48 307 276 290 305 39 312 266 259 75 170 107 158 0 0 0 c 0 0 0 57 29 32 22 14 19 15 14 9 21 12 12 11 5 21 30 32 40 55 42 0 0 0 g 0 0 0 52 47 131 20 19 23 20 19 14 15 7 7 13 11 14 23 10 41 67 66 0 0 0 t 0 0 0 95 126 95 57 36 263 37 274 25 43 46 31 292 27 54 43 238 104 126 89 0 0 0
oligos_6nt_test_vs_ctrl_m1_shift6 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1; m=6/7; ncol2=24; w=0; offset=4; strand=D; shift=6; score=0.511528; ------wwwTAAAAATAtAAAtAAAA ; cor=; Ncor= a 0 0 0 0 0 0 80 73 57 34 148 135 146 142 147 44 146 34 150 137 148 35 142 145 150 125 c 0 0 0 0 0 0 22 21 10 9 7 15 8 5 11 5 6 16 9 11 6 9 8 8 3 6 g 0 0 0 0 0 0 15 22 7 10 3 7 3 3 5 6 12 8 4 5 2 14 8 4 8 12 t 0 0 0 0 0 0 64 65 107 128 23 24 24 31 18 126 17 123 18 28 25 123 23 24 20 38
oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m4; m=7/7; ncol2=16; w=-2; offset=-2; strand=D; shift=0; score=0.41989; wwTAAAAATAAATwww---------- ; cor=; Ncor= a 324 356 109 737 742 781 751 782 98 770 694 735 168 381 296 377 0 0 0 0 0 0 0 0 0 0 c 116 98 41 40 29 19 34 23 40 28 51 38 46 104 150 130 0 0 0 0 0 0 0 0 0 0 g 105 132 46 32 28 21 24 25 54 26 33 38 44 147 115 128 0 0 0 0 0 0 0 0 0 0 t 340 299 689 76 86 64 76 55 693 61 107 74 627 253 324 250 0 0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift4 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=24; shift=4; ncol=28; ----wwwTAAAAATAtAAAtAAAAtwww ; Alignment reference a 0 0 0 0 80 73 57 34 148 135 146 142 147 44 146 34 150 137 148 35 142 145 150 125 42 48 82 61 c 0 0 0 0 22 21 10 9 7 15 8 5 11 5 6 16 9 11 6 9 8 8 3 6 18 13 28 25 g 0 0 0 0 15 22 7 10 3 7 3 3 5 6 12 8 4 5 2 14 8 4 8 12 10 13 25 15 t 0 0 0 0 64 65 107 128 23 24 24 31 18 126 17 123 18 28 25 123 23 24 20 38 111 107 46 80
oligos_6nt_test_vs_ctrl_m1_shift4 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/7; ncol2=24; w=0; offset=0; strand=D; shift=4; score= 1; ----wwwTAAAAATAtAAAtAAAAtwww ; cor=; Ncor= a 0 0 0 0 80 73 57 34 148 135 146 142 147 44 146 34 150 137 148 35 142 145 150 125 42 48 82 61 c 0 0 0 0 22 21 10 9 7 15 8 5 11 5 6 16 9 11 6 9 8 8 3 6 18 13 28 25 g 0 0 0 0 15 22 7 10 3 7 3 3 5 6 12 8 4 5 2 14 8 4 8 12 10 13 25 15 t 0 0 0 0 64 65 107 128 23 24 24 31 18 126 17 123 18 28 25 123 23 24 20 38 111 107 46 80
oligos_7nt_test_vs_ctrl_m1_shift5 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=2/7; ncol2=22; w=0; offset=1; strand=D; shift=5; score=0.785236; -----wwtAAAAATwAAAATAAAwwww- ; cor=; Ncor= a 0 0 0 0 0 126 138 50 239 236 242 235 253 57 97 235 239 253 263 40 251 238 233 80 154 108 137 0 c 0 0 0 0 0 33 29 25 20 12 15 16 9 16 13 13 10 10 8 14 15 12 14 12 21 50 35 0 g 0 0 0 0 0 32 42 26 13 14 6 8 13 19 12 14 11 11 11 20 11 8 7 18 46 39 26 0 t 0 0 0 0 0 113 95 203 32 42 41 45 29 212 182 42 44 30 22 230 27 46 50 194 83 107 106 0
oligos_6nt_test_vs_ctrl_m4_shift4 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=3/7; ncol2=24; w=0; offset=0; strand=D; shift=4; score=0.723349; ----awAkAAAtAAATATAAAAwAhaww ; cor=; Ncor= a 0 0 0 0 80 66 118 38 126 117 136 33 128 112 139 23 133 29 132 119 128 137 40 130 58 102 78 62 c 0 0 0 0 23 28 15 14 9 12 5 9 3 10 5 13 5 8 4 3 2 5 7 3 42 11 10 24 g 0 0 0 0 20 15 6 47 5 6 6 10 6 0 5 11 5 11 6 8 4 2 5 7 8 7 7 18 t 0 0 0 0 35 49 19 59 18 23 11 106 21 36 9 111 15 110 16 28 24 14 106 18 50 38 63 54
oligos_6nt_test_vs_ctrl_m2_shift3 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=4/7; ncol2=24; w=-1; offset=-1; strand=D; shift=3; score=0.662882; ---wwwTTwAAAATAATATAAAwAtww- ; cor=; Ncor= a 0 0 0 85 62 56 45 39 140 158 156 158 165 41 157 153 35 161 32 171 162 166 54 144 49 84 69 0 c 0 0 0 22 30 10 11 17 5 13 8 6 9 5 11 12 15 11 9 8 2 5 10 16 13 29 38 0 g 0 0 0 30 23 22 8 8 10 6 5 3 7 7 16 8 6 10 12 3 7 9 8 14 9 27 25 0 t 0 0 0 70 92 119 143 143 52 30 38 40 26 154 23 34 151 25 154 25 36 27 135 33 136 67 75 0
oligos_7nt_test_vs_ctrl_m2_shift8 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m2; m=5/7; ncol2=20; w=0; offset=4; strand=D; shift=8; score=0.642964; --------wwdAATATAAAATAAAtwww ; cor=; Ncor= a 0 0 0 0 0 0 0 0 151 153 97 256 286 50 283 48 307 276 290 305 39 312 266 259 75 170 107 158 c 0 0 0 0 0 0 0 0 57 29 32 22 14 19 15 14 9 21 12 12 11 5 21 30 32 40 55 42 g 0 0 0 0 0 0 0 0 52 47 131 20 19 23 20 19 14 15 7 7 13 11 14 23 10 41 67 66 t 0 0 0 0 0 0 0 0 95 126 95 57 36 263 37 274 25 43 46 31 292 27 54 43 238 104 126 89
oligos_7nt_test_vs_ctrl_m4_shift5 (oligos_7nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4; m=6/7; ncol2=16; w=0; offset=1; strand=D; shift=5; score=0.54167; -----wwTAAAAATAAATwww------- ; cor=; Ncor= a 0 0 0 0 0 324 356 109 737 742 781 751 782 98 770 694 735 168 381 296 377 0 0 0 0 0 0 0 c 0 0 0 0 0 116 98 41 40 29 19 34 23 40 28 51 38 46 104 150 130 0 0 0 0 0 0 0 g 0 0 0 0 0 105 132 46 32 28 21 24 25 54 26 33 38 44 147 115 128 0 0 0 0 0 0 0 t 0 0 0 0 0 340 299 689 76 86 64 76 55 693 61 107 74 627 253 324 250 0 0 0 0 0 0 0
oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5; m=7/7; ncol2=24; w=-4; offset=-4; strand=D; shift=0; score=0.511528; wwAhAAwAAATAATAtAAAATAww---- ; cor=; Ncor= a 54 57 93 42 101 108 34 110 98 107 26 114 115 27 119 28 117 97 111 110 21 108 47 56 0 0 0 0 c 18 18 7 44 19 5 22 7 11 5 8 7 4 6 3 10 0 6 5 4 4 6 22 24 0 0 0 0 g 13 13 18 8 2 8 1 4 3 7 4 4 6 1 5 7 7 3 1 2 7 8 8 10 0 0 0 0 t 50 47 17 41 13 14 78 14 23 16 97 10 10 101 8 90 11 29 18 19 103 13 58 45 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift3 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=24; shift=3; ncol=27; ---wwwTTwAAAATAATATAAAwAtww ; Alignment reference a 0 0 0 85 62 56 45 39 140 158 156 158 165 41 157 153 35 161 32 171 162 166 54 144 49 84 69 c 0 0 0 22 30 10 11 17 5 13 8 6 9 5 11 12 15 11 9 8 2 5 10 16 13 29 38 g 0 0 0 30 23 22 8 8 10 6 5 3 7 7 16 8 6 10 12 3 7 9 8 14 9 27 25 t 0 0 0 70 92 119 143 143 52 30 38 40 26 154 23 34 151 25 154 25 36 27 135 33 136 67 75
oligos_6nt_test_vs_ctrl_m2_shift3 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/8; ncol2=24; w=0; offset=0; strand=D; shift=3; score= 1; ---wwwTTwAAAATAATATAAAwAtww ; cor=; Ncor= a 0 0 0 85 62 56 45 39 140 158 156 158 165 41 157 153 35 161 32 171 162 166 54 144 49 84 69 c 0 0 0 22 30 10 11 17 5 13 8 6 9 5 11 12 15 11 9 8 2 5 10 16 13 29 38 g 0 0 0 30 23 22 8 8 10 6 5 3 7 7 16 8 6 10 12 3 7 9 8 14 9 27 25 t 0 0 0 70 92 119 143 143 52 30 38 40 26 154 23 34 151 25 154 25 36 27 135 33 136 67 75
oligos_6nt_test_vs_ctrl_m5_shift3 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5; m=2/8; ncol2=24; w=0; offset=0; strand=D; shift=3; score=0.736108; ---wwAhAAwAAATAATAtAAAATAww ; cor=; Ncor= a 0 0 0 54 57 93 42 101 108 34 110 98 107 26 114 115 27 119 28 117 97 111 110 21 108 47 56 c 0 0 0 18 18 7 44 19 5 22 7 11 5 8 7 4 6 3 10 0 6 5 4 4 6 22 24 g 0 0 0 13 13 18 8 2 8 1 4 3 7 4 4 6 1 5 7 7 3 1 2 7 8 8 10 t 0 0 0 50 47 17 41 13 14 78 14 23 16 97 10 10 101 8 90 11 29 18 19 103 13 58 45
oligos_7nt_test_vs_ctrl_m1_shift4 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=3/8; ncol2=22; w=0; offset=1; strand=D; shift=4; score=0.733402; ----wwtAAAAATwAAAATAAAwwww- ; cor=; Ncor= a 0 0 0 0 126 138 50 239 236 242 235 253 57 97 235 239 253 263 40 251 238 233 80 154 108 137 0 c 0 0 0 0 33 29 25 20 12 15 16 9 16 13 13 10 10 8 14 15 12 14 12 21 50 35 0 g 0 0 0 0 32 42 26 13 14 6 8 13 19 12 14 11 11 11 20 11 8 7 18 46 39 26 0 t 0 0 0 0 113 95 203 32 42 41 45 29 212 182 42 44 30 22 230 27 46 50 194 83 107 106 0
oligos_7nt_test_vs_ctrl_m2_shift6 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=4/8; ncol2=20; w=0; offset=3; strand=D; shift=6; score=0.667688; ------wwdAATATAAAATAAAtwww- ; cor=; Ncor= a 0 0 0 0 0 0 151 153 97 256 286 50 283 48 307 276 290 305 39 312 266 259 75 170 107 158 0 c 0 0 0 0 0 0 57 29 32 22 14 19 15 14 9 21 12 12 11 5 21 30 32 40 55 42 0 g 0 0 0 0 0 0 52 47 131 20 19 23 20 19 14 15 7 7 13 11 14 23 10 41 67 66 0 t 0 0 0 0 0 0 95 126 95 57 36 263 37 274 25 43 46 31 292 27 54 43 238 104 126 89 0
oligos_6nt_test_vs_ctrl_m1_shift4 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=5/8; ncol2=24; w=0; offset=1; strand=D; shift=4; score=0.662882; ----wwwTAAAAATAtAAAtAAAAtww ; cor=; Ncor= a 0 0 0 0 80 73 57 34 148 135 146 142 147 44 146 34 150 137 148 35 142 145 150 125 42 48 82 c 0 0 0 0 22 21 10 9 7 15 8 5 11 5 6 16 9 11 6 9 8 8 3 6 18 13 28 g 0 0 0 0 15 22 7 10 3 7 3 3 5 6 12 8 4 5 2 14 8 4 8 12 10 13 25 t 0 0 0 0 64 65 107 128 23 24 24 31 18 126 17 123 18 28 25 123 23 24 20 38 111 107 46
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4; m=6/8; ncol2=24; w=-3; offset=-3; strand=D; shift=0; score=0.55988; awAkAAAtAAATATAAAAwAhaww--- ; cor=; Ncor= a 80 66 118 38 126 117 136 33 128 112 139 23 133 29 132 119 128 137 40 130 58 102 78 62 0 0 0 c 23 28 15 14 9 12 5 9 3 10 5 13 5 8 4 3 2 5 7 3 42 11 10 24 0 0 0 g 20 15 6 47 5 6 6 10 6 0 5 11 5 11 6 8 4 2 5 7 8 7 7 18 0 0 0 t 35 49 19 59 18 23 11 106 21 36 9 111 15 110 16 28 24 14 106 18 50 38 63 54 0 0 0
oligos_7nt_test_vs_ctrl_m4_shift5 (oligos_7nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4; m=7/8; ncol2=16; w=0; offset=2; strand=D; shift=5; score=0.492625; -----wwTAAAAATAAATwww------ ; cor=; Ncor= a 0 0 0 0 0 324 356 109 737 742 781 751 782 98 770 694 735 168 381 296 377 0 0 0 0 0 0 c 0 0 0 0 0 116 98 41 40 29 19 34 23 40 28 51 38 46 104 150 130 0 0 0 0 0 0 g 0 0 0 0 0 105 132 46 32 28 21 24 25 54 26 33 38 44 147 115 128 0 0 0 0 0 0 t 0 0 0 0 0 340 299 689 76 86 64 76 55 693 61 107 74 627 253 324 250 0 0 0 0 0 0
oligos_7nt_test_vs_ctrl_m3_shift6 (oligos_7nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m3; m=8/8; ncol2=14; w=0; offset=3; strand=D; shift=6; score=0.419606; ------wwAACAATAAtwww------- ; cor=; Ncor= a 0 0 0 0 0 0 181 168 409 442 49 435 428 34 437 414 91 128 192 156 0 0 0 0 0 0 0 c 0 0 0 0 0 0 71 87 15 11 357 10 12 13 5 10 44 44 68 94 0 0 0 0 0 0 0 g 0 0 0 0 0 0 91 69 14 11 15 6 15 13 8 11 46 82 84 61 0 0 0 0 0 0 0 t 0 0 0 0 0 0 135 154 40 14 57 27 23 418 28 43 297 224 134 167 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift2 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=24; shift=2; ncol=26; --awAkAAAtAAATATAAAAwAhaww ; Alignment reference a 0 0 80 66 118 38 126 117 136 33 128 112 139 23 133 29 132 119 128 137 40 130 58 102 78 62 c 0 0 23 28 15 14 9 12 5 9 3 10 5 13 5 8 4 3 2 5 7 3 42 11 10 24 g 0 0 20 15 6 47 5 6 6 10 6 0 5 11 5 11 6 8 4 2 5 7 8 7 7 18 t 0 0 35 49 19 59 18 23 11 106 21 36 9 111 15 110 16 28 24 14 106 18 50 38 63 54
oligos_6nt_test_vs_ctrl_m4_shift2 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/7; ncol2=24; w=0; offset=0; strand=D; shift=2; score= 1; --awAkAAAtAAATATAAAAwAhaww ; cor=; Ncor= a 0 0 80 66 118 38 126 117 136 33 128 112 139 23 133 29 132 119 128 137 40 130 58 102 78 62 c 0 0 23 28 15 14 9 12 5 9 3 10 5 13 5 8 4 3 2 5 7 3 42 11 10 24 g 0 0 20 15 6 47 5 6 6 10 6 0 5 11 5 11 6 8 4 2 5 7 8 7 7 18 t 0 0 35 49 19 59 18 23 11 106 21 36 9 111 15 110 16 28 24 14 106 18 50 38 63 54
oligos_6nt_test_vs_ctrl_m1_shift2 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1; m=2/7; ncol2=24; w=0; offset=0; strand=D; shift=2; score=0.723349; --wwwTAAAAATAtAAAtAAAAtwww ; cor=; Ncor= a 0 0 80 73 57 34 148 135 146 142 147 44 146 34 150 137 148 35 142 145 150 125 42 48 82 61 c 0 0 22 21 10 9 7 15 8 5 11 5 6 16 9 11 6 9 8 8 3 6 18 13 28 25 g 0 0 15 22 7 10 3 7 3 3 5 6 12 8 4 5 2 14 8 4 8 12 10 13 25 15 t 0 0 64 65 107 128 23 24 24 31 18 126 17 123 18 28 25 123 23 24 20 38 111 107 46 80
oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m5; m=3/7; ncol2=24; w=-2; offset=-2; strand=D; shift=0; score=0.690261; wwAhAAwAAATAATAtAAAATAww-- ; cor=; Ncor= a 54 57 93 42 101 108 34 110 98 107 26 114 115 27 119 28 117 97 111 110 21 108 47 56 0 0 c 18 18 7 44 19 5 22 7 11 5 8 7 4 6 3 10 0 6 5 4 4 6 22 24 0 0 g 13 13 18 8 2 8 1 4 3 7 4 4 6 1 5 7 7 3 1 2 7 8 8 10 0 0 t 50 47 17 41 13 14 78 14 23 16 97 10 10 101 8 90 11 29 18 19 103 13 58 45 0 0
oligos_7nt_test_vs_ctrl_m1_shift1 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1; m=4/7; ncol2=22; w=-1; offset=-1; strand=D; shift=1; score=0.637993; -wwtAAAAATwAAAATAAAwwww--- ; cor=; Ncor= a 0 126 138 50 239 236 242 235 253 57 97 235 239 253 263 40 251 238 233 80 154 108 137 0 0 0 c 0 33 29 25 20 12 15 16 9 16 13 13 10 10 8 14 15 12 14 12 21 50 35 0 0 0 g 0 32 42 26 13 14 6 8 13 19 12 14 11 11 11 20 11 8 7 18 46 39 26 0 0 0 t 0 113 95 203 32 42 41 45 29 212 182 42 44 30 22 230 27 46 50 194 83 107 106 0 0 0
oligos_7nt_test_vs_ctrl_m2_shift8 (oligos_7nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2; m=5/7; ncol2=20; w=0; offset=6; strand=D; shift=8; score=0.614586; --------wwdAATATAAAATAAAtw ; cor=; Ncor= a 0 0 0 0 0 0 0 0 151 153 97 256 286 50 283 48 307 276 290 305 39 312 266 259 75 170 c 0 0 0 0 0 0 0 0 57 29 32 22 14 19 15 14 9 21 12 12 11 5 21 30 32 40 g 0 0 0 0 0 0 0 0 52 47 131 20 19 23 20 19 14 15 7 7 13 11 14 23 10 41 t 0 0 0 0 0 0 0 0 95 126 95 57 36 263 37 274 25 43 46 31 292 27 54 43 238 104
oligos_6nt_test_vs_ctrl_m2_shift5 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2; m=6/7; ncol2=24; w=0; offset=3; strand=D; shift=5; score=0.55988; -----wwwTTwAAAATAATATAAAwA ; cor=; Ncor= a 0 0 0 0 0 85 62 56 45 39 140 158 156 158 165 41 157 153 35 161 32 171 162 166 54 144 c 0 0 0 0 0 22 30 10 11 17 5 13 8 6 9 5 11 12 15 11 9 8 2 5 10 16 g 0 0 0 0 0 30 23 22 8 8 10 6 5 3 7 7 16 8 6 10 12 3 7 9 8 14 t 0 0 0 0 0 70 92 119 143 143 52 30 38 40 26 154 23 34 151 25 154 25 36 27 135 33
oligos_7nt_test_vs_ctrl_m4_shift1 (oligos_7nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=7/7; ncol2=16; w=-1; offset=-1; strand=D; shift=1; score=0.50511; -wwTAAAAATAAATwww--------- ; cor=; Ncor= a 0 324 356 109 737 742 781 751 782 98 770 694 735 168 381 296 377 0 0 0 0 0 0 0 0 0 c 0 116 98 41 40 29 19 34 23 40 28 51 38 46 104 150 130 0 0 0 0 0 0 0 0 0 g 0 105 132 46 32 28 21 24 25 54 26 33 38 44 147 115 128 0 0 0 0 0 0 0 0 0 t 0 340 299 689 76 86 64 76 55 693 61 107 74 627 253 324 250 0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift7 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=14; shift=7; ncol=21; -------wwAACAATAAtwww ; Alignment reference a 0 0 0 0 0 0 0 181 168 409 442 49 435 428 34 437 414 91 128 192 156 c 0 0 0 0 0 0 0 71 87 15 11 357 10 12 13 5 10 44 44 68 94 g 0 0 0 0 0 0 0 91 69 14 11 15 6 15 13 8 11 46 82 84 61 t 0 0 0 0 0 0 0 135 154 40 14 57 27 23 418 28 43 297 224 134 167
oligos_7nt_test_vs_ctrl_m3_shift7 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/4; ncol2=14; w=0; offset=0; strand=D; shift=7; score= 1; -------wwAACAATAAtwww ; cor=; Ncor= a 0 0 0 0 0 0 0 181 168 409 442 49 435 428 34 437 414 91 128 192 156 c 0 0 0 0 0 0 0 71 87 15 11 357 10 12 13 5 10 44 44 68 94 g 0 0 0 0 0 0 0 91 69 14 11 15 6 15 13 8 11 46 82 84 61 t 0 0 0 0 0 0 0 135 154 40 14 57 27 23 418 28 43 297 224 134 167
oligos_7nt_test_vs_ctrl_m4_shift6 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4; m=2/4; ncol2=16; w=-1; offset=-1; strand=D; shift=6; score=0.670254; ------wwTAAAAATAAATww ; cor=; Ncor= a 0 0 0 0 0 0 324 356 109 737 742 781 751 782 98 770 694 735 168 381 296 c 0 0 0 0 0 0 116 98 41 40 29 19 34 23 40 28 51 38 46 104 150 g 0 0 0 0 0 0 105 132 46 32 28 21 24 25 54 26 33 38 44 147 115 t 0 0 0 0 0 0 340 299 689 76 86 64 76 55 693 61 107 74 627 253 324
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m1; m=3/4; ncol2=22; w=-7; offset=-7; strand=D; shift=0; score=0.449676; wwtAAAAATwAAAATAAAwww ; cor=; Ncor= a 126 138 50 239 236 242 235 253 57 97 235 239 253 263 40 251 238 233 80 154 108 c 33 29 25 20 12 15 16 9 16 13 13 10 10 8 14 15 12 14 12 21 50 g 32 42 26 13 14 6 8 13 19 12 14 11 11 11 20 11 8 7 18 46 39 t 113 95 203 32 42 41 45 29 212 182 42 44 30 22 230 27 46 50 194 83 107
oligos_6nt_test_vs_ctrl_m2_shift4 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m2; m=4/4; ncol2=24; w=-3; offset=-3; strand=D; shift=4; score=0.419606; ----wwwTTwAAAATAATATA ; cor=; Ncor= a 0 0 0 0 85 62 56 45 39 140 158 156 158 165 41 157 153 35 161 32 171 c 0 0 0 0 22 30 10 11 17 5 13 8 6 9 5 11 12 15 11 9 8 g 0 0 0 0 30 23 22 8 8 10 6 5 3 7 7 16 8 6 10 12 3 t 0 0 0 0 70 92 119 143 143 52 30 38 40 26 154 23 34 151 25 154 25

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift6 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=20; shift=6; ncol=26; ------wwdAATATAAAATAAAtwww ; Alignment reference a 0 0 0 0 0 0 151 153 97 256 286 50 283 48 307 276 290 305 39 312 266 259 75 170 107 158 c 0 0 0 0 0 0 57 29 32 22 14 19 15 14 9 21 12 12 11 5 21 30 32 40 55 42 g 0 0 0 0 0 0 52 47 131 20 19 23 20 19 14 15 7 7 13 11 14 23 10 41 67 66 t 0 0 0 0 0 0 95 126 95 57 36 263 37 274 25 43 46 31 292 27 54 43 238 104 126 89
oligos_7nt_test_vs_ctrl_m2_shift6 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/8; ncol2=20; w=0; offset=0; strand=D; shift=6; score= 1; ------wwdAATATAAAATAAAtwww ; cor=; Ncor= a 0 0 0 0 0 0 151 153 97 256 286 50 283 48 307 276 290 305 39 312 266 259 75 170 107 158 c 0 0 0 0 0 0 57 29 32 22 14 19 15 14 9 21 12 12 11 5 21 30 32 40 55 42 g 0 0 0 0 0 0 52 47 131 20 19 23 20 19 14 15 7 7 13 11 14 23 10 41 67 66 t 0 0 0 0 0 0 95 126 95 57 36 263 37 274 25 43 46 31 292 27 54 43 238 104 126 89
oligos_7nt_test_vs_ctrl_m1_shift4 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=2/8; ncol2=22; w=-2; offset=-2; strand=D; shift=4; score=0.719588; ----wwtAAAAATwAAAATAAAwwww ; cor=; Ncor= a 0 0 0 0 126 138 50 239 236 242 235 253 57 97 235 239 253 263 40 251 238 233 80 154 108 137 c 0 0 0 0 33 29 25 20 12 15 16 9 16 13 13 10 10 8 14 15 12 14 12 21 50 35 g 0 0 0 0 32 42 26 13 14 6 8 13 19 12 14 11 11 11 20 11 8 7 18 46 39 26 t 0 0 0 0 113 95 203 32 42 41 45 29 212 182 42 44 30 22 230 27 46 50 194 83 107 106
oligos_6nt_test_vs_ctrl_m2_shift3 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=3/8; ncol2=24; w=-3; offset=-3; strand=D; shift=3; score=0.667688; ---wwwTTwAAAATAATATAAAwAtw ; cor=; Ncor= a 0 0 0 85 62 56 45 39 140 158 156 158 165 41 157 153 35 161 32 171 162 166 54 144 49 84 c 0 0 0 22 30 10 11 17 5 13 8 6 9 5 11 12 15 11 9 8 2 5 10 16 13 29 g 0 0 0 30 23 22 8 8 10 6 5 3 7 7 16 8 6 10 12 3 7 9 8 14 9 27 t 0 0 0 70 92 119 143 143 52 30 38 40 26 154 23 34 151 25 154 25 36 27 135 33 136 67
oligos_6nt_test_vs_ctrl_m1_shift2 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=4/8; ncol2=24; w=-4; offset=-4; strand=D; shift=2; score=0.642964; --wwwTAAAAATAtAAAtAAAAtwww ; cor=; Ncor= a 0 0 80 73 57 34 148 135 146 142 147 44 146 34 150 137 148 35 142 145 150 125 42 48 82 61 c 0 0 22 21 10 9 7 15 8 5 11 5 6 16 9 11 6 9 8 8 3 6 18 13 28 25 g 0 0 15 22 7 10 3 7 3 3 5 6 12 8 4 5 2 14 8 4 8 12 10 13 25 15 t 0 0 64 65 107 128 23 24 24 31 18 126 17 123 18 28 25 123 23 24 20 38 111 107 46 80
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4; m=5/8; ncol2=24; w=-6; offset=-6; strand=D; shift=0; score=0.614586; awAkAAAtAAATATAAAAwAhaww-- ; cor=; Ncor= a 80 66 118 38 126 117 136 33 128 112 139 23 133 29 132 119 128 137 40 130 58 102 78 62 0 0 c 23 28 15 14 9 12 5 9 3 10 5 13 5 8 4 3 2 5 7 3 42 11 10 24 0 0 g 20 15 6 47 5 6 6 10 6 0 5 11 5 11 6 8 4 2 5 7 8 7 7 18 0 0 t 35 49 19 59 18 23 11 106 21 36 9 111 15 110 16 28 24 14 106 18 50 38 63 54 0 0
oligos_7nt_test_vs_ctrl_m4_shift10 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4; m=6/8; ncol2=16; w=0; offset=4; strand=D; shift=10; score=0.613683; ----------wwTAAAAATAAATwww ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 324 356 109 737 742 781 751 782 98 770 694 735 168 381 296 377 c 0 0 0 0 0 0 0 0 0 0 116 98 41 40 29 19 34 23 40 28 51 38 46 104 150 130 g 0 0 0 0 0 0 0 0 0 0 105 132 46 32 28 21 24 25 54 26 33 38 44 147 115 128 t 0 0 0 0 0 0 0 0 0 0 340 299 689 76 86 64 76 55 693 61 107 74 627 253 324 250
oligos_6nt_test_vs_ctrl_m5_shift5 (oligos_6nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m5; m=7/8; ncol2=24; w=-1; offset=-1; strand=D; shift=5; score=0.591284; -----wwAhAAwAAATAATAtAAAAT ; cor=; Ncor= a 0 0 0 0 0 54 57 93 42 101 108 34 110 98 107 26 114 115 27 119 28 117 97 111 110 21 c 0 0 0 0 0 18 18 7 44 19 5 22 7 11 5 8 7 4 6 3 10 0 6 5 4 4 g 0 0 0 0 0 13 13 18 8 2 8 1 4 3 7 4 4 6 1 5 7 7 3 1 2 7 t 0 0 0 0 0 50 47 17 41 13 14 78 14 23 16 97 10 10 101 8 90 11 29 18 19 103
oligos_7nt_test_vs_ctrl_m5_shift6 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m5; m=8/8; ncol2=13; w=0; offset=0; strand=D; shift=6; score=0.504647; ------wwkAATATAATww------- ; cor=; Ncor= a 0 0 0 0 0 0 145 160 63 339 358 13 399 23 365 339 29 156 148 0 0 0 0 0 0 0 c 0 0 0 0 0 0 57 41 19 5 16 4 6 11 12 19 14 83 69 0 0 0 0 0 0 0 g 0 0 0 0 0 0 80 80 226 13 11 12 8 10 19 19 5 67 59 0 0 0 0 0 0 0 t 0 0 0 0 0 0 138 139 112 63 35 391 7 376 24 43 372 114 144 0 0 0 0 0 0 0