peak-motifs T15vsNT

Sequence composition (test sequences)

Nb of peaks: 3039
Total seq. size: 611 kb
Min length: 201 bp
Mean length: 201 bp
Max length: 201 bp [ seq: converted purged ]
[ lengths: list distrib graph ]

Nucleotide composition profiles

Transition frequencies
Position profiles

[ 1nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Dinucleotide composition profiles

Transition frequencies
Position profiles

[ 2nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Sequence composition (ctrl sequences)

Nb of peaks: 3101
Total seq. size: 623 kb
Min length: 201 bp
Mean length: 201 bp
Max length: 201 bp [ seq: converted purged ]
[ lengths: list distrib graph ]

Nucleotide composition profiles

Transition frequencies
Position profiles

[ 1nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Dinucleotide composition profiles

Transition frequencies
Position profiles

[ 2nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=11.83; evalue=1.5e-12

wwwtAaAAAtAtAaAtAAAattaw

WTAATTTTATTTATATTTTTAWWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 320 (10.53%)
Max nb of predicted sites per peak: 35
(18:86042493-86042694)
Mean nb of predicted sites per peak: 4.33

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=11.83; evalue=1.5e-12

wwtttaaaaAtaatAtAAAtatww

WWATATTTATATTATTTTTAAAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 326 (10.73%)
Max nb of predicted sites per peak: 43
(5:91660134-91660335)
Mean nb of predicted sites per peak: 4.02

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=8.55; evalue=2.8e-09

wwtttAaAAaTtaatTTTTaawww

WWWTTAAAAATTAATTTTTAAAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 260 (8.56%)
Max nb of predicted sites per peak: 31
(5:91660134-91660335)
Mean nb of predicted sites per peak: 3.28

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=11.83; evalue=1.5e-12

awakAaAtAaAtAtAaAAtAhaww

WWTDTATTTTATATTTATTTMTWT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 332 (10.92%)
Max nb of predicted sites per peak: 43
(1:19542064-19542265)
Mean nb of predicted sites per peak: 4.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=11.83; evalue=1.5e-12

wwahaAtAaAtAAtAtAaAAtAww

WWTATTTTATATTATTTATTDTWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 298 (9.81%)
Max nb of predicted sites per peak: 39
(1:19542064-19542265)
Mean nb of predicted sites per peak: 3.73

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_7nt_test_vs_ctrl_m1

k-mer sig=5.61; evalue=2.5e-06

wwtAAAAAtwAAAAtAAAtaww

WWTATTTATTTTWATTTTTAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 349 (11.48%)
Max nb of predicted sites per peak: 34
(1:19542064-19542265)
Mean nb of predicted sites per peak: 3.62

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_test_vs_ctrl_m2

k-mer sig=5.61; evalue=2.5e-06

awgaAtATAAAATAaatwwa

TWWATTTATTTTATATTCWT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 310 (10.20%)
Max nb of predicted sites per peak: 27
(2:55748169-55748370)
Mean nb of predicted sites per peak: 2.33

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_test_vs_ctrl_m3

k-mer sig=3.52; evalue=0.0003

wwAACAATAAttaw

WTAATTATTGTTWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 181 (5.96%)
Max nb of predicted sites per peak: 8
(18:86042493-86042694)
Mean nb of predicted sites per peak: 1.27

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_test_vs_ctrl_m4

k-mer sig=5.61; evalue=2.5e-06

wwTAAAAATAAAtwww

WWWATTTATTTTTAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 323 (10.63%)
Max nb of predicted sites per peak: 15
(19:32822290-32822491)
Mean nb of predicted sites per peak: 1.79

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_test_vs_ctrl_m5

k-mer sig=3.08; evalue=0.00083

wwgAATATAATaw

WTATTATATTCWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 205 (6.75%)
Max nb of predicted sites per peak: 11
(2:55748169-55748370)
Mean nb of predicted sites per peak: 1.48

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Predicted sites on test peaks (all motifs)

[tab]
[bed]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

Thomas-Chollier M, Herrmann C, Defrance M, Sand O, Thieffry D, van Helden J. (2012). RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets. Nucleic Acids Res 40(4): e31.
Thomas-Chollier M, Darbo E, Herrmann C, Defrance M, Thieffry D, van Helden J. (2012). A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs. Nat Protoc 7(8): 1551-1568.

RSAT - peak-motifs result

Analysis: T15vsNT (18/09/2025 09:40)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results