/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095222_2025-09-18.095222_GHH2VN/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095222_2025-09-18.095222_GHH2VN/data/sequences/peak-motifs_ctrl_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title T30vsNT -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095222_2025-09-18.095222_GHH2VN/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095222_2025-09-18.095222_GHH2VN/data/sequences/peak-motifs_ctrl_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095222_2025-09-18.095222_GHH2VN/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	3101
	Sum of sequence lengths      	623301
	Min sequence length          	0
	Max sequence length          	201
	Average sequence length      	201
	Possible positions           	620200
 Oligonucleotide statistics:
	Total occurrences    	477184
 Position interval parameters:
	Position interval    	20
	Number of windows    	11
	Total positions      	620200
	Degrees of freedom   	10
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-6	[-119,-100]	-109.5	3101	3101
	2	-5	[-99,-80]	-89.5	3101	62020
	3	-4	[-79,-60]	-69.5	3101	62020
	4	-3	[-59,-40]	-49.5	3101	62020
	5	-2	[-39,-20]	-29.5	3101	62020
	6	-1	[-19,0]	-9.5	3101	62020
	7	0	[1,20]	10.5	3101	62020
	8	1	[21,40]	30.5	3101	62020
	9	2	[41,60]	50.5	3101	62020
	10	3	[61,80]	70.5	3101	62020
	11	4	[81,100]	90.5	3101	58919

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-109.5         	occurrences in window	1	[-119,-100]
	11	-89.5          	occurrences in window	2	[-99,-80]
	12	-69.5          	occurrences in window	3	[-79,-60]
	13	-49.5          	occurrences in window	4	[-59,-40]
	14	-29.5          	occurrences in window	5	[-39,-20]
	15	-9.5           	occurrences in window	6	[-19,0]
	16	10.5           	occurrences in window	7	[1,20]
	17	30.5           	occurrences in window	8	[21,40]
	18	50.5           	occurrences in window	9	[41,60]
	19	70.5           	occurrences in window	10	[61,80]
	20	90.5           	occurrences in window	11	[81,100]
seq id occ chi2 df Pval Eval sig rank -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5
ag ag 33856 64.9 10 4.2e-10 6.8e-09 8.17 1 191 3605 3383 3298 3271 3383 3245 3224 3302 3456 3498
tt tt 39047 62.6 10 1.1e-09 1.8e-08 7.74 2 225 4270 3836 3804 3745 3723 3888 3920 3925 3871 3840
aa aa 39920 62.4 10 1.3e-09 2.1e-08 7.69 3 249 4063 3860 3868 3939 3897 3787 4012 4115 4045 4085
ct ct 33893 55.7 10 2.4e-08 3.8e-07 6.42 4 173 3666 3450 3245 3251 3316 3331 3251 3382 3414 3414
ta ta 23466 55.2 10 2.9e-08 4.6e-07 6.34 5 116 2495 2434 2217 2256 2197 2235 2327 2374 2401 2414
gc gc 26020 49.7 10 3.1e-07 4.9e-06 5.31 6 149 2759 2544 2529 2508 2711 2573 2467 2502 2614 2664
gg gg 27968 43.0 10 5.0e-06 8e-05 4.10 7 142 2848 2782 2828 2797 2788 2625 2678 2697 2907 2876
gt gt 24976 35.4 10 1.1e-04 0.0017 2.76 8 131 2688 2561 2482 2443 2434 2397 2439 2396 2509 2496
ac ac 25190 32.6 10 3.2e-04 0.005 2.30 9 156 2565 2620 2438 2440 2350 2500 2532 2577 2544 2468
tg tg 36161 31.7 10 4.6e-04 0.0073 2.14 10 188 3802 3643 3652 3562 3664 3433 3511 3529 3606 3571
tc tc 30249 31.1 10 5.7e-04 0.0091 2.04 11 164 3190 3099 2915 2961 2843 3083 2999 3017 3039 2939
ga ga 29923 26.2 10 3.5e-03 0.055 1.26 12 156 3090 3046 3002 2935 2911 2837 2891 3034 3062 2959
cc cc 27961 16.9 10 7.6e-02 1.2 -0.09 13 154 2840 2683 2747 2723 2732 2809 2818 2871 2836 2748
at at 31014 15.4 10 1.2e-01 1.9 -0.28 14 148 3185 3130 3045 3105 2941 3059 3122 3117 3141 3021
ca ca 36602 13.9 10 1.8e-01 2.9 -0.46 15 191 3737 3690 3569 3618 3525 3738 3654 3637 3683 3560
cg cg 10938 13.0 10 2.3e-01 3.6 -0.56 16 52 1145 1135 1058 1044 1056 1070 1080 1085 1121 1092 
 Host name	rsat
 Job started	2025-09-18.095238
 Job done	2025-09-18.095241
 Seconds	3.41
	user	3.41
	system	0.03
	cuser	0
;	csystem	0