/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095222_2025-09-18.095222_GHH2VN/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095222_2025-09-18.095222_GHH2VN/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title T30vsNT -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095222_2025-09-18.095222_GHH2VN/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095222_2025-09-18.095222_GHH2VN/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095222_2025-09-18.095222_GHH2VN/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab
 Oligo length                 	1
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	1690
	Sum of sequence lengths      	339690
	Min sequence length          	0
	Max sequence length          	201
	Average sequence length      	201
	Possible positions           	339690
 Oligonucleotide statistics:
	Total occurrences    	230041
 Position interval parameters:
	Position interval    	20
	Number of windows    	11
	Total positions      	339690
	Degrees of freedom   	10
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-6	[-119,-100]	-109.5	1690	1690
	2	-5	[-99,-80]	-89.5	1690	33800
	3	-4	[-79,-60]	-69.5	1690	33800
	4	-3	[-59,-40]	-49.5	1690	33800
	5	-2	[-39,-20]	-29.5	1690	33800
	6	-1	[-19,0]	-9.5	1690	33800
	7	0	[1,20]	10.5	1690	33800
	8	1	[21,40]	30.5	1690	33800
	9	2	[41,60]	50.5	1690	33800
	10	3	[61,80]	70.5	1690	33800
	11	4	[81,100]	90.5	1690	33800

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-109.5         	occurrences in window	1	[-119,-100]
	11	-89.5          	occurrences in window	2	[-99,-80]
	12	-69.5          	occurrences in window	3	[-79,-60]
	13	-49.5          	occurrences in window	4	[-59,-40]
	14	-29.5          	occurrences in window	5	[-39,-20]
	15	-9.5           	occurrences in window	6	[-19,0]
	16	10.5           	occurrences in window	7	[1,20]
	17	30.5           	occurrences in window	8	[21,40]
	18	50.5           	occurrences in window	9	[41,60]
	19	70.5           	occurrences in window	10	[61,80]
	20	90.5           	occurrences in window	11	[81,100]
seq id occ chi2 df Pval Eval sig rank -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5
g g 52669 139.2 10 6.2e-25 2.5e-24 23.61 1 321 5739 5458 5274 5108 5159 4989 4968 4917 5189 5547
t t 61630 109.1 10 8.0e-19 3.2e-18 17.49 2 346 6714 6267 6009 6003 5935 5876 5965 6011 6060 6444
a a 62752 79.0 10 8.0e-13 3.2e-12 11.49 3 341 6661 6419 6180 6114 6013 6008 6023 6201 6246 6546
c c 52990 52.3 10 1.0e-07 4e-07 6.40 4 297 5631 5284 5275 5082 5126 5219 5160 5217 5214 5485 
 Host name	rsat
 Job started	2025-09-18.095225
 Job done	2025-09-18.095226
 Seconds	1.68
	user	1.68
	system	0
	cuser	0
;	csystem	0