/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095222_2025-09-18.095222_GHH2VN/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095222_2025-09-18.095222_GHH2VN/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title T30vsNT -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095222_2025-09-18.095222_GHH2VN/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095222_2025-09-18.095222_GHH2VN/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095222_2025-09-18.095222_GHH2VN/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	1690
	Sum of sequence lengths      	339690
	Min sequence length          	0
	Max sequence length          	201
	Average sequence length      	201
	Possible positions           	338000
 Oligonucleotide statistics:
	Total occurrences    	228413
 Position interval parameters:
	Position interval    	20
	Number of windows    	11
	Total positions      	338000
	Degrees of freedom   	10
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-6	[-119,-100]	-109.5	1690	1690
	2	-5	[-99,-80]	-89.5	1690	33800
	3	-4	[-79,-60]	-69.5	1690	33800
	4	-3	[-59,-40]	-49.5	1690	33800
	5	-2	[-39,-20]	-29.5	1690	33800
	6	-1	[-19,0]	-9.5	1690	33800
	7	0	[1,20]	10.5	1690	33800
	8	1	[21,40]	30.5	1690	33800
	9	2	[41,60]	50.5	1690	33800
	10	3	[61,80]	70.5	1690	33800
	11	4	[81,100]	90.5	1690	32110

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-109.5         	occurrences in window	1	[-119,-100]
	11	-89.5          	occurrences in window	2	[-99,-80]
	12	-69.5          	occurrences in window	3	[-79,-60]
	13	-49.5          	occurrences in window	4	[-59,-40]
	14	-29.5          	occurrences in window	5	[-39,-20]
	15	-9.5           	occurrences in window	6	[-19,0]
	16	10.5           	occurrences in window	7	[1,20]
	17	30.5           	occurrences in window	8	[21,40]
	18	50.5           	occurrences in window	9	[41,60]
	19	70.5           	occurrences in window	10	[61,80]
	20	90.5           	occurrences in window	11	[81,100]
seq id occ chi2 df Pval Eval sig rank -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5
tg tg 17479 59.1 10 5.4e-09 8.6e-08 7.06 1 86 1997 1776 1743 1764 1749 1683 1635 1605 1732 1709
ta ta 10718 55.3 10 2.8e-08 4.5e-07 6.34 2 74 1212 1123 1039 1041 982 950 1064 1071 1087 1075
gg gg 13236 53.6 10 5.9e-08 9.4e-07 6.03 3 77 1476 1381 1340 1284 1345 1212 1239 1224 1304 1354
gt gt 11902 53.5 10 5.9e-08 9.5e-07 6.02 4 76 1366 1253 1161 1195 1167 1120 1118 1090 1184 1172
aa aa 19033 36.9 10 5.8e-05 0.00093 3.03 5 117 2005 1932 1902 1890 1873 1729 1838 1948 1886 1913
gc gc 12332 33.1 10 2.6e-04 0.0042 2.38 6 83 1301 1282 1306 1171 1159 1190 1213 1182 1208 1237
ct ct 16128 32.5 10 3.4e-04 0.0054 2.27 7 96 1777 1592 1625 1582 1574 1531 1567 1588 1581 1615
ag ag 16356 30.4 10 7.5e-04 0.012 1.92 8 77 1746 1719 1625 1581 1566 1571 1568 1582 1675 1646
tt tt 18355 29.4 10 1.1e-03 0.017 1.77 9 97 1943 1907 1771 1750 1760 1775 1885 1828 1791 1848
ga ga 14830 25.0 10 5.3e-03 0.085 1.07 10 80 1573 1526 1453 1442 1485 1458 1394 1416 1493 1510
at at 14797 23.2 10 9.9e-03 0.16 0.80 11 84 1589 1493 1451 1485 1413 1443 1391 1481 1488 1479
cc cc 13532 22.9 10 1.1e-02 0.18 0.76 12 91 1432 1303 1335 1292 1371 1332 1326 1375 1324 1351
ac ac 12110 18.4 10 4.8e-02 0.77 0.11 13 60 1304 1254 1191 1151 1144 1256 1223 1180 1197 1150
cg cg 5215 18.1 10 5.3e-02 0.86 0.07 14 24 548 558 543 465 493 515 507 495 530 537
tc tc 14642 17.2 10 6.9e-02 1.1 -0.04 15 86 1535 1452 1445 1441 1438 1460 1374 1495 1450 1466
ca ca 17748 13.0 10 2.2e-01 3.5 -0.55 16 85 1850 1819 1763 1735 1683 1839 1756 1750 1779 1689 
 Host name	rsat
 Job started	2025-09-18.095227
 Job done	2025-09-18.095229
 Seconds	1.93
	user	1.93
	system	0.03
	cuser	0.01
;	csystem	0