; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:52187636-52187837	site	oligos_7nt_test_vs_ctrl_m3	D	-74	-64	CAGACTCTCCA	7.7
1:52187636-52187837	site	oligos_7nt_test_vs_ctrl_m3	D	25	35	GAGACTCTCAT	8.6
1:110177455-110177656	site	oligos_7nt_test_vs_ctrl_m3	D	-31	-21	AGGACTCTCCT	8.2
1:171340925-171341126	site	oligos_7nt_test_vs_ctrl_m3	D	54	64	CAGACTCTCTC	8.3
10:8601218-8601419	site	oligos_7nt_test_vs_ctrl_m3	D	7	17	GGGACTCTCAC	8.6
10:14746811-14747012	site	oligos_7nt_test_vs_ctrl_m3	R	-71	-61	ATGACTCTCAG	8.4
10:36997006-36997207	site	oligos_7nt_test_vs_ctrl_m3	R	80	90	TAGACTCTCCC	8.7
10:50700437-50700638	site	oligos_7nt_test_vs_ctrl_m3	R	72	82	CTGACTCTCAA	7.7
10:59950652-59950853	site	oligos_7nt_test_vs_ctrl_m3	R	-70	-60	TGGACTCTCGC	8.9
10:77652867-77653068	site	oligos_7nt_test_vs_ctrl_m3	D	45	55	AGGACTCTCAA	8.0
10:128047660-128047861	site	oligos_7nt_test_vs_ctrl_m3	R	-64	-54	GTGACTCTCGT	9.5
11:50207459-50207660	site	oligos_7nt_test_vs_ctrl_m3	R	82	92	TTGACTCTCCC	8.1
11:69998373-69998574	site	oligos_7nt_test_vs_ctrl_m3	D	68	78	AGGACTCTCTT	8.4
11:86733616-86733817	site	oligos_7nt_test_vs_ctrl_m3	D	-31	-21	GAGACTCTCCT	8.4
12:8499218-8499419	site	oligos_7nt_test_vs_ctrl_m3	R	38	48	CGGACTCTCTC	9.3
12:72048760-72048961	site	oligos_7nt_test_vs_ctrl_m3	R	63	73	TAGACTCTCTA	9.2
12:96922631-96922832	site	oligos_7nt_test_vs_ctrl_m3	D	52	62	GTGACTCTCGT	9.5
12:108737345-108737546	site	oligos_7nt_test_vs_ctrl_m3	R	-74	-64	AGGACTCTCTG	8.5
13:64996602-64996803	site	oligos_7nt_test_vs_ctrl_m3	D	-70	-60	GCGACTCTCTC	9.4
13:107787706-107787907	site	oligos_7nt_test_vs_ctrl_m3	R	-20	-10	GAGACTCTCTT	8.6
14:52205262-52205463	site	oligos_7nt_test_vs_ctrl_m3	R	80	90	AGGACTCTCTA	8.8
14:52237389-52237590	site	oligos_7nt_test_vs_ctrl_m3	R	23	33	TGGACTCTCTG	8.3
15:8290731-8290932	site	oligos_7nt_test_vs_ctrl_m3	R	-29	-19	CAGACTCTCCT	7.9
15:8351574-8351775	site	oligos_7nt_test_vs_ctrl_m3	R	-30	-20	TGGACTCTCAG	8.1
15:12118094-12118295	site	oligos_7nt_test_vs_ctrl_m3	D	21	31	CTGACTCTCCG	9.0
15:30094979-30095180	site	oligos_7nt_test_vs_ctrl_m3	D	-25	-15	GCGACTCTCTC	9.4
15:66613091-66613292	site	oligos_7nt_test_vs_ctrl_m3	R	-34	-24	AAGACTCTCCA	8.0
16:87555714-87555915	site	oligos_7nt_test_vs_ctrl_m3	R	18	28	GAGACTCTCGG	9.3
17:12967533-12967734	site	oligos_7nt_test_vs_ctrl_m3	R	-1	9	TAGACTCTCCC	8.7
18:6111876-6112077	site	oligos_7nt_test_vs_ctrl_m3	R	-48	-38	CAGACTCTCAA	7.7
18:24014289-24014490	site	oligos_7nt_test_vs_ctrl_m3	D	-38	-28	TGGACTCTCTG	8.3
19:6975312-6975513	site	oligos_7nt_test_vs_ctrl_m3	D	75	85	GCGACTCTACG	7.8
19:11438375-11438576	site	oligos_7nt_test_vs_ctrl_m3	D	-56	-46	AAGACTCTCAG	8.3
19:53988077-53988278	site	oligos_7nt_test_vs_ctrl_m3	D	-13	-3	CTGACTCTCTT	8.1
19:53988077-53988278	site	oligos_7nt_test_vs_ctrl_m3	D	74	84	TAGACTCTCTC	9.0
2:18080702-18080903	site	oligos_7nt_test_vs_ctrl_m3	D	-88	-78	ATGACTCTCAT	8.6
2:26921920-26922121	site	oligos_7nt_test_vs_ctrl_m3	R	68	78	TTGACTCTCGT	9.0
2:45356984-45357185	site	oligos_7nt_test_vs_ctrl_m3	D	-75	-65	TGGACTCTCTA	8.6
2:72970852-72971053	site	oligos_7nt_test_vs_ctrl_m3	R	0	10	GGGACTCTCGG	9.2
2:90909544-90909745	site	oligos_7nt_test_vs_ctrl_m3	D	-12	-2	GGGACTCTCTA	8.9
3:22459990-22460191	site	oligos_7nt_test_vs_ctrl_m3	D	-89	-79	GCGACTCTCTC	9.4
3:101581952-101582153	site	oligos_7nt_test_vs_ctrl_m3	R	73	83	ATGACTCTCCA	8.2
3:104752665-104752866	site	oligos_7nt_test_vs_ctrl_m3	D	16	26	GTGACTCTCTT	8.7
4:48468336-48468537	site	oligos_7nt_test_vs_ctrl_m3	D	81	91	GTGACTCTCCG	9.5
4:95632907-95633108	site	oligos_7nt_test_vs_ctrl_m3	R	-79	-69	AAGACTCTCTC	8.6
4:129839492-129839693	site	oligos_7nt_test_vs_ctrl_m3	D	62	72	GCGACTCTCAA	8.8
5:31204449-31204650	site	oligos_7nt_test_vs_ctrl_m3	R	54	64	GAGACTCTCGC	9.2
5:31243848-31244049	site	oligos_7nt_test_vs_ctrl_m3	R	68	78	TTGACTCTCCC	8.1
5:115272266-115272467	site	oligos_7nt_test_vs_ctrl_m3	D	-98	-88	TAGACTCGCCG	7.8
5:124885913-124886114	site	oligos_7nt_test_vs_ctrl_m3	R	-71	-61	TGGACTCTCTG	8.3
6:35512090-35512291	site	oligos_7nt_test_vs_ctrl_m3	R	-4	6	ATGACTCTCCT	8.4
6:75297539-75297740	site	oligos_7nt_test_vs_ctrl_m3	R	-42	-32	ATGACTCTCAG	8.4
6:126077119-126077320	site	oligos_7nt_test_vs_ctrl_m3	D	-95	-85	CAGACTCTCTG	8.2
7:15288912-15289113	site	oligos_7nt_test_vs_ctrl_m3	D	85	95	GCGACTCGCGG	7.9
7:112093166-112093367	site	oligos_7nt_test_vs_ctrl_m3	D	22	32	TTGACTCTCAC	8.3
7:123170342-123170543	site	oligos_7nt_test_vs_ctrl_m3	R	27	37	TTGACTCTCCA	7.8
7:131570215-131570416	site	oligos_7nt_test_vs_ctrl_m3	D	-99	-89	TAGACTCGCGG	7.5
9:72061081-72061282	site	oligos_7nt_test_vs_ctrl_m3	R	89	99	AGGACTCTCAA	8.0
9:85325034-85325235	site	oligos_7nt_test_vs_ctrl_m3	R	-69	-59	TAGACTCTCTT	8.9
X:152027775-152027976	site	oligos_7nt_test_vs_ctrl_m3	R	30	40	CTGACTCTCTT	8.1
X:164422883-164423084	site	oligos_7nt_test_vs_ctrl_m3	R	-59	-49	ATGACTCTCAG	8.4
X:164422883-164423084	site	oligos_7nt_test_vs_ctrl_m3	D	-29	-19	ACGACTCTCTT	9.4
;
; Matrices
;	matrix	name                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_test_vs_ctrl_m3	11	4	0	-15.400	9.400	24.800	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                      	matches	scored
;	1	oligos_7nt_test_vs_ctrl_m3	62	0
;		TOTAL          	62	0
; Host name	rsat
; Job started	2025-09-18.095851
; Job done	2025-09-18.095851
; Seconds	0.26
;	user	0.26
;	system	0.02
;	cuser	0.11
;	csystem	0.01
