; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:8056450-8056651	site	dyads_test_vs_ctrl_m3	D	-22	7	ATCCATCAAAATTATGTATCATACAAACTG	8.4
1:8791917-8792118	site	dyads_test_vs_ctrl_m3	R	61	90	TACCGGCATGTCATGTTACCCAGAGAACTC	7.6
1:9746119-9746320	site	dyads_test_vs_ctrl_m3	R	-65	-36	ATCCGGACGATTACACTCCTGTAAATATAG	8.7
1:19153043-19153244	site	dyads_test_vs_ctrl_m3	D	-4	25	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
1:21511981-21512182	site	dyads_test_vs_ctrl_m3	R	21	50	AAGCATTTGTTATTGATGCTGTAAGAACTA	8.0
1:24613180-24613381	site	dyads_test_vs_ctrl_m3	R	22	51	TTCCTTATTGTTTGCCTACTACGACAACTA	8.4
1:55760127-55760328	site	dyads_test_vs_ctrl_m3	R	2	31	CTAAATCGTACCCTTATACTCTCAGATAAG	7.9
1:55760127-55760328	site	dyads_test_vs_ctrl_m3	R	24	53	CACCGTAACTCCTTACTACATTCTAAATCG	9.6
1:60692064-60692265	site	dyads_test_vs_ctrl_m3	R	-66	-37	CGCCAGAAGTTCTTTTATCCTTGAGAAGAC	8.1
1:95026280-95026481	site	dyads_test_vs_ctrl_m3	D	-3	26	GTCCAGCTTCGTTTATTTCATTAGATATTT	8.1
1:162671906-162672107	site	dyads_test_vs_ctrl_m3	D	8	37	ATATATATGTATATATATTTATATTTATAT	7.8
1:162671906-162672107	site	dyads_test_vs_ctrl_m3	D	10	39	ATATATGTATATATATTTATATTTATATAA	7.9
1:162671906-162672107	site	dyads_test_vs_ctrl_m3	R	10	39	TTATATAAATATAAATATATATACATATAT	8.3
1:162671906-162672107	site	dyads_test_vs_ctrl_m3	D	14	43	ATGTATATATATTTATATTTATATAAAAAG	7.8
1:162671906-162672107	site	dyads_test_vs_ctrl_m3	D	16	45	GTATATATATTTATATTTATATAAAAAGAC	11.7
1:164437163-164437364	site	dyads_test_vs_ctrl_m3	R	67	96	GTACAATTTTATTTTTTTCTGCAAGAAAAA	8.4
1:165866197-165866398	site	dyads_test_vs_ctrl_m3	R	7	36	CTGCAGAACCTTAGACTTGTGTACTAAGTA	7.8
1:172668785-172668986	site	dyads_test_vs_ctrl_m3	D	-22	7	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
1:172668785-172668986	site	dyads_test_vs_ctrl_m3	D	54	83	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
1:180802598-180802799	site	dyads_test_vs_ctrl_m3	R	-45	-16	TTCCATCCATTCACTATACTTTTCTAACTG	9.8
10:20325356-20325557	site	dyads_test_vs_ctrl_m3	R	18	47	GTTTATAATTTTTTTCTTCTCTAAATCCAT	8.0
10:40566180-40566381	site	dyads_test_vs_ctrl_m3	D	-57	-28	CTGCAGTCTGATCTGATTCTGTATTATCAA	7.7
10:58465078-58465279	site	dyads_test_vs_ctrl_m3	R	-27	2	TTCAGGAATACTATTCTTCTTTCTGATCAT	7.8
10:69019628-69019829	site	dyads_test_vs_ctrl_m3	D	-35	-6	CTACAGTGTACTTAGATATAATAATAAATA	8.2
10:85313742-85313943	site	dyads_test_vs_ctrl_m3	R	-79	-50	ACCTATATGAGCATCGATCTCTACAATCTT	7.9
10:99023572-99023773	site	dyads_test_vs_ctrl_m3	D	-100	-71	GTAGATACTTTTTTTGTTCTTCATAGACGG	7.5
10:108278716-108278917	site	dyads_test_vs_ctrl_m3	R	-68	-39	ATACAGTCAGCTACTATACGCTTTAAATGT	7.5
10:117815440-117815641	site	dyads_test_vs_ctrl_m3	D	-43	-14	ATACAGTACACCATTTTCATACATGTACAA	7.7
10:117815440-117815641	site	dyads_test_vs_ctrl_m3	R	60	89	CACGAGAGATTTTTACTTATATAATAGTTC	7.9
10:120923653-120923854	site	dyads_test_vs_ctrl_m3	D	29	58	ATACAGAAAGATTGGTTACTTTATATATTA	10.8
10:120923653-120923854	site	dyads_test_vs_ctrl_m3	R	45	74	TTAAAATATATATATATAATATATAAAGTA	7.8
10:122591143-122591344	site	dyads_test_vs_ctrl_m3	R	53	82	ATACATACATATATAATACATACACACACA	7.6
10:122591143-122591344	site	dyads_test_vs_ctrl_m3	R	61	90	ATTCATACATACATACATATATAATACATA	9.0
11:30099526-30099727	site	dyads_test_vs_ctrl_m3	R	-89	-60	TAACAAATTTTCATCTTACTGCACAATCAA	7.7
11:41142429-41142630	site	dyads_test_vs_ctrl_m3	R	-63	-34	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
11:41142429-41142630	site	dyads_test_vs_ctrl_m3	R	13	42	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
11:46243313-46243514	site	dyads_test_vs_ctrl_m3	D	-14	15	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
11:46243313-46243514	site	dyads_test_vs_ctrl_m3	D	62	91	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
11:53420947-53421148	site	dyads_test_vs_ctrl_m3	D	-58	-29	CCACATCTGTATAGTATATTATATGTATTT	7.6
11:53420947-53421148	site	dyads_test_vs_ctrl_m3	R	-56	-27	CAAAATACATATAATATACTATACAGATGT	8.9
11:69998373-69998574	site	dyads_test_vs_ctrl_m3	D	-94	-65	CCCCGTCGGACCTTCGAACTATCCAGACTT	8.4
11:75765378-75765579	site	dyads_test_vs_ctrl_m3	D	14	43	GTACAGATCTGTATTGTTCTTACTGAAACA	8.6
11:77529243-77529444	site	dyads_test_vs_ctrl_m3	D	-32	-3	ATACAATTAATACAGGTTATATACGAACTA	9.1
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	45	74	ATATATATATATATTTGTATATATTATCCT	7.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	47	76	ATATATATATATATATTTGTATATATTATC	8.5
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	49	78	GTATATATATATATATATTTGTATATATTA	9.6
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	51	80	ATATATACAAATATATATATATATATACAT	10.2
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	51	80	ATGTATATATATATATATATTTGTATATAT	8.1
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	53	82	ATATACAAATATATATATATATATACATAT	8.4
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	55	84	ATACAAATATATATATATATATACATATAT	10.7
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	59	88	ATATATATATGTATATATATATATATATTT	8.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	61	90	ATATATATATATATATACATATATATATAT	8.3
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	61	90	ATATATATATATGTATATATATATATATAT	9.4
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	63	92	ATATATATATATATACATATATATATATAG	9.8
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	63	92	CTATATATATATATGTATATATATATATAT	10.0
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	65	94	ATATATATATATACATATATATATATAGTT	8.2
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	65	94	AACTATATATATATATGTATATATATATAT	9.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	67	96	ATATATATATACATATATATATATAGTTAT	7.7
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	71	100	TTAAATAACTATATATATATATGTATATAT	8.4
11:78696611-78696812	site	dyads_test_vs_ctrl_m3	D	5	34	TTCCATTCCCACATCCTTTTCTAAACACCT	8.1
11:85191658-85191859	site	dyads_test_vs_ctrl_m3	R	16	45	TTCGAGTATCACAACGTTCTGTCTAACTGG	7.8
11:86707074-86707275	site	dyads_test_vs_ctrl_m3	D	-18	11	ATCCAGGCGGTTAATATACTCCATAACACG	8.2
11:88049473-88049674	site	dyads_test_vs_ctrl_m3	D	69	98	ATACAGTTTTCCTTTACTCAGTACAATCTT	7.9
11:88083427-88083628	site	dyads_test_vs_ctrl_m3	R	-20	9	ATTTATAAAATTATTTTACACTAGGTACTA	7.7
11:98624944-98625145	site	dyads_test_vs_ctrl_m3	D	-69	-40	AAACAAAACTTTAATTTCCTGTACATACTC	7.6
11:98800007-98800208	site	dyads_test_vs_ctrl_m3	R	-97	-68	TAACAGGAGTCTTTCTTTCTGTATTTCCAA	7.6
12:8750134-8750335	site	dyads_test_vs_ctrl_m3	R	-83	-54	CTATAATTCTATATACATCTCTATAAACCT	9.0
12:26150409-26150610	site	dyads_test_vs_ctrl_m3	R	-73	-44	TTCCAGGGTCCTTCTCTTCTTTAGGAATTT	7.7
12:55095822-55096023	site	dyads_test_vs_ctrl_m3	R	25	54	TAAAATAAAACTCTATTTATATAAATATAT	8.7
12:82317882-82318083	site	dyads_test_vs_ctrl_m3	R	11	40	ATACAGCTCTCTTAAGTTCTCTATTATAGC	7.8
12:86881263-86881464	site	dyads_test_vs_ctrl_m3	D	44	73	AAACATACGACGAAAATAATGTCTATACAT	8.1
12:100206116-100206317	site	dyads_test_vs_ctrl_m3	R	-34	-5	CGCCATCAATATCTGCTTCTCTGATCATTT	7.9
12:100744724-100744925	site	dyads_test_vs_ctrl_m3	D	35	64	ACCCAGACGCGTTTAGTACTTCTCGATGAT	8.9
12:101058379-101058580	site	dyads_test_vs_ctrl_m3	R	-54	-25	CATCAGACATACAGAGTTCAGTATATACAA	8.7
13:9686159-9686360	site	dyads_test_vs_ctrl_m3	D	-58	-29	ATTTAAATATTCATTTTTCTCTAAGATCCA	7.6
13:66008519-66008720	site	dyads_test_vs_ctrl_m3	D	-2	27	TTCCATTGTTTTATATGATTTTCCTAACAA	7.7
13:107726003-107726204	site	dyads_test_vs_ctrl_m3	R	-76	-47	AAACAGAACACCTCCATCCTGTGATAAGTA	7.8
13:111361685-111361886	site	dyads_test_vs_ctrl_m3	R	-64	-35	CAACAGCAATATAACGTTCTGGAGCTACTA	7.9
13:111361685-111361886	site	dyads_test_vs_ctrl_m3	D	-58	-29	CTCCAGAACGTTATATTGCTGTTGGAATAT	8.7
14:13903319-13903520	site	dyads_test_vs_ctrl_m3	R	-89	-60	ATCTAACTATACTCATTTATATATAAAAAA	8.0
14:31700030-31700231	site	dyads_test_vs_ctrl_m3	D	-98	-69	CGTCTGTGTTTTATTATACTCTAAAATATA	9.0
14:52084144-52084345	site	dyads_test_vs_ctrl_m3	D	-24	5	GCCCACAATTTTGCCATACTTTGAAAAGAT	7.5
14:56959765-56959966	site	dyads_test_vs_ctrl_m3	R	-23	6	TATCATAAATATCTTTTACTAGAAGAACCC	10.7
14:120428892-120429093	site	dyads_test_vs_ctrl_m3	D	-3	26	AATAACTAAACATTGTTACTGTACATATTA	8.4
15:8358915-8359116	site	dyads_test_vs_ctrl_m3	R	17	46	TTACATTAAGACTTTCTCGTGTAAGATCTT	8.4
15:58054541-58054742	site	dyads_test_vs_ctrl_m3	R	-31	-2	ATGAATGTAAATATTGTACTTTTCAAACTC	8.1
15:76150410-76150611	site	dyads_test_vs_ctrl_m3	D	-89	-60	TACCGGCATGTCATGTTACCCAGAGAACTC	7.6
15:87473797-87473998	site	dyads_test_vs_ctrl_m3	R	-36	-7	GTCCATCCGTCCATCCATCTGTCCATCCCC	8.4
15:87473797-87473998	site	dyads_test_vs_ctrl_m3	R	-8	21	ATCCATCCGTCCGTCCGTCCATCCATCCGT	8.0
15:87473797-87473998	site	dyads_test_vs_ctrl_m3	R	-4	25	ATCCATCCATCCGTCCGTCCGTCCATCCAT	7.9
15:87473797-87473998	site	dyads_test_vs_ctrl_m3	R	0	29	ATCCATCCATCCATCCGTCCGTCCGTCCAT	8.5
15:87473797-87473998	site	dyads_test_vs_ctrl_m3	R	4	33	ATCCATCCATCCATCCATCCGTCCGTCCGT	8.3
16:31991021-31991222	site	dyads_test_vs_ctrl_m3	D	-42	-13	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
16:31991021-31991222	site	dyads_test_vs_ctrl_m3	D	34	63	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
16:33497994-33498195	site	dyads_test_vs_ctrl_m3	R	27	56	CTACAGAATATTTATTTTTTTTACTAAAAC	9.1
16:38243318-38243519	site	dyads_test_vs_ctrl_m3	R	-40	-11	GAACAGTAACTTTTTGCTCATTAATAACAG	8.2
16:38245133-38245334	site	dyads_test_vs_ctrl_m3	D	-83	-54	AAACAAAATTTATTATTATTATATATATAT	7.7
16:38245133-38245334	site	dyads_test_vs_ctrl_m3	R	-71	-42	CCACAGTCCTTTATATATATATAATAATAA	10.0
16:38245133-38245334	site	dyads_test_vs_ctrl_m3	R	-69	-40	ACCCACAGTCCTTTATATATATATAATAAT	7.7
16:52250508-52250709	site	dyads_test_vs_ctrl_m3	D	43	72	AAATATATATTCTATATTCTGTGGAAAATA	8.5
16:74197811-74198012	site	dyads_test_vs_ctrl_m3	R	37	66	CTCCAGAATCTCCTAATTCTTATTAAAAAT	7.8
16:76294177-76294378	site	dyads_test_vs_ctrl_m3	D	39	68	AGCCAGCAACGCTTCCTTCTTTACGTTTAA	9.5
16:84955073-84955274	site	dyads_test_vs_ctrl_m3	R	68	97	ACCCATCGGTGTTCATTTATAAAATAACGT	8.8
16:94692004-94692205	site	dyads_test_vs_ctrl_m3	D	-46	-17	ATCCAACATACCAATTTTCTGCTAATACAG	8.2
17:19718003-19718204	site	dyads_test_vs_ctrl_m3	R	-94	-65	ATTAAGTCATCTTATTTACTTTATTAAGAA	9.0
17:23344270-23344471	site	dyads_test_vs_ctrl_m3	R	-66	-37	GTTAAGATAGCATTAAGTCTGTAATAATAT	8.1
17:30395894-30396095	site	dyads_test_vs_ctrl_m3	D	-36	-7	ACCCAGACGCGTGTAGTACTTCTCGATGAT	8.2
17:74702371-74702572	site	dyads_test_vs_ctrl_m3	R	-29	0	TTACATAATTAGTTTCTTACATACAAATAT	7.7
17:82191826-82192027	site	dyads_test_vs_ctrl_m3	D	-56	-27	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
18:34909808-34910009	site	dyads_test_vs_ctrl_m3	D	-63	-34	GCACAGCAGTCTCGGCTACTTTCCGAACAT	11.3
18:35860873-35861074	site	dyads_test_vs_ctrl_m3	R	-5	24	GCCCAGGAAGTCTCGGTACTTTATAGATTC	8.6
18:36288773-36288974	site	dyads_test_vs_ctrl_m3	R	-79	-50	AAACCTACGTACCTTGAACTCTACAAACTT	7.6
18:38464343-38464544	site	dyads_test_vs_ctrl_m3	R	1	30	TTCGATGATTACAGAATTCTGCATTAACTA	8.2
18:46506114-46506315	site	dyads_test_vs_ctrl_m3	D	-70	-41	AAGTAAATCTCTTTTTTTATCTACAAACGT	8.3
18:51811837-51812038	site	dyads_test_vs_ctrl_m3	D	60	89	ATCCATCAATGTAATCCATTATATAAACAA	8.4
18:85848456-85848657	site	dyads_test_vs_ctrl_m3	D	9	38	CGATAGATTTCCATTTTTCGGTAGAGACCA	7.7
19:6592302-6592503	site	dyads_test_vs_ctrl_m3	D	28	57	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
19:14561454-14561655	site	dyads_test_vs_ctrl_m3	D	-35	-6	ACTTATAAAGATATTTTACAGTTAAAACCA	7.7
19:29809764-29809965	site	dyads_test_vs_ctrl_m3	D	-86	-57	TTTCATTAATTTTTCCTTCTGCGATTATAC	8.4
19:40622559-40622760	site	dyads_test_vs_ctrl_m3	R	-79	-50	CTTCACATACTCTTACTATTGTGGTAACTC	8.3
2:15631544-15631745	site	dyads_test_vs_ctrl_m3	R	-55	-26	CACTAAACATGTACTGTTCTTTGAAAATTA	7.7
2:19993021-19993222	site	dyads_test_vs_ctrl_m3	R	-80	-51	CTTCACATACTCTTACTATTGTGGTAACTC	8.3
2:30068968-30069169	site	dyads_test_vs_ctrl_m3	R	-86	-57	TGTTATATTTTTGTTCTACTTTCAAAATTT	7.7
2:37373353-37373554	site	dyads_test_vs_ctrl_m3	D	-6	23	TTCCATACTGACACCAGAATATCAAAACTA	8.1
2:64474632-64474833	site	dyads_test_vs_ctrl_m3	D	-83	-54	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
2:70023480-70023681	site	dyads_test_vs_ctrl_m3	R	-63	-34	ATACATTATACCATGTATATATAGCATCAG	7.6
2:109724142-109724343	site	dyads_test_vs_ctrl_m3	D	-63	-34	AGACAAAATTATCTATTTGTATATATACAT	8.4
2:131322086-131322287	site	dyads_test_vs_ctrl_m3	D	32	61	AGCCAATAATACAACCTTCTATCCGCATAT	9.4
2:147243322-147243523	site	dyads_test_vs_ctrl_m3	R	-88	-59	CCCCTGTAGGCTTATATTATTTAAAAACCT	9.5
2:155226364-155226565	site	dyads_test_vs_ctrl_m3	R	-92	-63	TCAAATATAACTTCTGTATTTTAAAAATAT	7.8
2:155226364-155226565	site	dyads_test_vs_ctrl_m3	R	-20	9	TTCCAGAACTAAACGTTTCTTCCATAAAAA	8.7
2:162908080-162908281	site	dyads_test_vs_ctrl_m3	R	-9	20	CTCCATCTGCCCCTGATTCTTTCCCAGCTA	7.9
3:34069069-34069270	site	dyads_test_vs_ctrl_m3	D	2	31	CGCCAGTCTTACATCGCACTTTCAGTTCCT	8.0
3:94984369-94984570	site	dyads_test_vs_ctrl_m3	D	-37	-8	CTCTATGGCTATTTCATACTTGTATAACTC	7.7
3:116560834-116561035	site	dyads_test_vs_ctrl_m3	D	-81	-52	AAACAAAACTTTAATTTCCTGTACATACTC	7.6
3:119719375-119719576	site	dyads_test_vs_ctrl_m3	D	13	42	AACCATTTTCCAAATCTTAATTACAAACTA	7.6
3:137866511-137866712	site	dyads_test_vs_ctrl_m3	D	-99	-70	TTCCAGTGGACTGTATCTCTGTGAAAAACA	7.5
3:157888666-157888867	site	dyads_test_vs_ctrl_m3	D	1	30	CGCCAGTTTCGCTTAATTTTCACATATCAG	7.9
4:73498188-73498389	site	dyads_test_vs_ctrl_m3	D	-59	-30	TGCCATCCAGTTTGTGTTCTTTCAGATCCA	8.3
4:74228178-74228379	site	dyads_test_vs_ctrl_m3	D	-57	-28	ACCCATACTTCTGGCCTTCTATCCCCACAG	7.5
4:74228178-74228379	site	dyads_test_vs_ctrl_m3	D	51	80	CGCCACCTCACTATCCCACTTTGCTAACTG	9.1
4:74303168-74303369	site	dyads_test_vs_ctrl_m3	D	-12	17	GACCATTAACCATTAATATTTTTGAAACTA	8.7
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	D	-98	-69	CTGAATATATATATATTTATATATGTATAT	9.6
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	D	-96	-67	GAATATATATATATTTATATATGTATATTA	8.1
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	R	-96	-67	TAATATACATATATAAATATATATATATTC	8.0
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	R	-94	-65	TTTAATATACATATATAAATATATATATAT	7.9
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	D	-92	-63	ATATATATATTTATATATGTATATTAAAAA	8.2
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	D	-90	-61	ATATATATTTATATATGTATATTAAAAAAA	7.5
4:106136481-106136682	site	dyads_test_vs_ctrl_m3	R	-88	-59	TTACAGACGTTCTTAATGCTACAAGAGCAG	7.9
4:119278109-119278310	site	dyads_test_vs_ctrl_m3	D	-64	-35	GGCCTTTTTTTTTTTTTTCTTAAAAAACAC	8.2
4:129715921-129716122	site	dyads_test_vs_ctrl_m3	R	57	86	ATCCATATGGACGTTATTAAAAACAAACAG	8.2
4:146277742-146277943	site	dyads_test_vs_ctrl_m3	R	56	85	ATACAGTGTATCTATGTACTATATGTGCCC	8.4
5:13526296-13526497	site	dyads_test_vs_ctrl_m3	R	-64	-35	AAACATATTATTGGTATTATTATAAAACTA	8.3
5:29833047-29833248	site	dyads_test_vs_ctrl_m3	D	24	53	GGACAATATTCTGTCTTTCTTTCCGATCCC	8.8
5:76232688-76232889	site	dyads_test_vs_ctrl_m3	D	-5	24	GACCACTTATCTTTCAAAATATCTAAACAT	8.6
5:92187897-92188098	site	dyads_test_vs_ctrl_m3	R	-12	17	GCTAATAAATCCTAGTTTCTCTATGAAATT	7.9
5:108085485-108085686	site	dyads_test_vs_ctrl_m3	D	-36	-7	AGTAACACTTTTGTGTTACTATAAAAAATT	8.1
5:110117765-110117966	site	dyads_test_vs_ctrl_m3	D	-89	-60	CACCACTATTACTATGTCCTATCATAACAT	11.7
5:149048501-149048702	site	dyads_test_vs_ctrl_m3	D	-35	-6	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
5:149048501-149048702	site	dyads_test_vs_ctrl_m3	D	41	70	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
6:16238269-16238470	site	dyads_test_vs_ctrl_m3	R	-64	-35	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
6:16238269-16238470	site	dyads_test_vs_ctrl_m3	R	52	81	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
6:31475433-31475634	site	dyads_test_vs_ctrl_m3	R	-31	-2	CTACATTACTCTTAATATTAATATAAACTA	8.7
6:31475433-31475634	site	dyads_test_vs_ctrl_m3	R	-21	8	CTCTAGCCCTCTACATTACTCTTAATATTA	8.4
6:83362600-83362801	site	dyads_test_vs_ctrl_m3	D	-45	-16	CAGCATAAATTTACTGTACTAAGATATCTA	8.9
6:98061195-98061396	site	dyads_test_vs_ctrl_m3	D	-29	0	GTTCATCTTTCTATATATCTCCCCAAAACG	8.0
6:113153052-113153253	site	dyads_test_vs_ctrl_m3	R	-48	-19	TTACATACGTTTTATATAATATACAAAGAA	11.4
6:116174085-116174286	site	dyads_test_vs_ctrl_m3	D	3	32	TTCCAGTGGACTGTATCTCTGTGAAAAACA	7.5
6:142970384-142970585	site	dyads_test_vs_ctrl_m3	D	-5	24	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
7:90208138-90208339	site	dyads_test_vs_ctrl_m3	D	-98	-69	TTACATAACATTAATATTATATCAGACCTC	9.8
7:96202699-96202900	site	dyads_test_vs_ctrl_m3	D	-74	-45	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
7:96202699-96202900	site	dyads_test_vs_ctrl_m3	D	2	31	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
7:99090278-99090479	site	dyads_test_vs_ctrl_m3	R	59	88	ATGTAGGTTTTCATTTTTCTTTTATAACGA	8.7
7:111072120-111072321	site	dyads_test_vs_ctrl_m3	D	32	61	TTACAGTTAAGAATTTTTCTGTAACAACCA	9.7
8:3995673-3995874	site	dyads_test_vs_ctrl_m3	R	68	97	CTTCAGCTGTTTTCTGTATTCTACAAACAT	8.5
8:61363928-61364129	site	dyads_test_vs_ctrl_m3	D	2	31	TCGCTTTTCCCCATATTTCTTTGTAAACTC	8.6
8:126981352-126981553	site	dyads_test_vs_ctrl_m3	D	-31	-2	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
8:126981352-126981553	site	dyads_test_vs_ctrl_m3	D	45	74	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
9:57128069-57128270	site	dyads_test_vs_ctrl_m3	R	-51	-22	GCACATCAAAGCATATTTCTTTAATAAAAA	9.7
9:72430772-72430973	site	dyads_test_vs_ctrl_m3	D	37	66	CTAAAGACACATTTGGTAGTGTGTTAACTA	7.8
9:81677768-81677969	site	dyads_test_vs_ctrl_m3	R	-67	-38	TGTTATATTTTTGTTCTACTTTCAAAATTT	7.7
9:109363602-109363803	site	dyads_test_vs_ctrl_m3	R	-38	-9	ATCCATCAATGTAATCCATTATATAAACAA	8.4
X:3084861-3085062	site	dyads_test_vs_ctrl_m3	R	70	99	ATCCATCAGCATAATCCACTATATAAACAA	10.7
X:13156341-13156542	site	dyads_test_vs_ctrl_m3	D	56	85	TGGAATGCATATATACTTTTTTATGAACGA	7.6
X:13156341-13156542	site	dyads_test_vs_ctrl_m3	D	60	89	ATGCATATATACTTTTTTATGAACGAATGG	8.7
X:51004277-51004478	site	dyads_test_vs_ctrl_m3	D	-86	-57	ATACAGATATCTATTTTATTAAAAAAGTTA	9.4
;
; Matrices
;	matrix	name                 	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	dyads_test_vs_ctrl_m3	30	4	0	-24.500	17.200	41.700	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                 	matches	scored
;	1	dyads_test_vs_ctrl_m3	186	0
;		TOTAL          	186	0
; Host name	rsat
; Job started	2025-09-18.095855
; Job done	2025-09-18.095856
; Seconds	0.27
;	user	0.27
;	system	0.01
;	cuser	0.11
;	csystem	0.01
