; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:55015556-55015757	site	oligos_7nt_test_vs_ctrl_m4	D	61	71	TAATTCATGCA	8.0
1:55152813-55153014	site	oligos_7nt_test_vs_ctrl_m4	D	56	66	TTATTCATGAG	8.8
1:131935746-131935947	site	oligos_7nt_test_vs_ctrl_m4	R	85	95	TAATTCATGAA	8.6
1:180093957-180094158	site	oligos_7nt_test_vs_ctrl_m4	D	-30	-20	GAATTCATGGA	7.7
10:17723945-17724146	site	oligos_7nt_test_vs_ctrl_m4	R	83	93	GCATTCATGTT	8.4
10:57782302-57782503	site	oligos_7nt_test_vs_ctrl_m4	D	77	87	GGATTCATGTG	7.5
10:61691294-61691495	site	oligos_7nt_test_vs_ctrl_m4	D	-68	-58	GTATTCATGTG	9.1
10:82431448-82431649	site	oligos_7nt_test_vs_ctrl_m4	D	61	71	TCATTCATGGA	8.0
10:92542411-92542612	site	oligos_7nt_test_vs_ctrl_m4	R	58	68	TTATTCATGGT	8.9
10:128047660-128047861	site	oligos_7nt_test_vs_ctrl_m4	D	78	88	GTATTAATGTT	7.6
10:128084264-128084465	site	oligos_7nt_test_vs_ctrl_m4	R	51	61	ACATTCATGAT	8.8
11:20446647-20446848	site	oligos_7nt_test_vs_ctrl_m4	R	30	40	AAATTCATGCC	7.7
11:59212520-59212721	site	oligos_7nt_test_vs_ctrl_m4	D	52	62	GCATTCATGGC	7.8
11:86267032-86267233	site	oligos_7nt_test_vs_ctrl_m4	R	-94	-84	TTATTCATGAA	9.0
11:86711426-86711627	site	oligos_7nt_test_vs_ctrl_m4	R	6	16	GAATTCATGAG	7.8
11:94292298-94292499	site	oligos_7nt_test_vs_ctrl_m4	R	-3	7	GTATTCATGCC	8.8
12:35773186-35773387	site	oligos_7nt_test_vs_ctrl_m4	D	-4	6	GCATTCATGGA	7.8
12:52516456-52516657	site	oligos_7nt_test_vs_ctrl_m4	D	-44	-34	AAATTCATGTC	8.5
13:34074546-34074747	site	oligos_7nt_test_vs_ctrl_m4	D	-91	-81	TCATTCATGTT	8.5
13:64624414-64624615	site	oligos_7nt_test_vs_ctrl_m4	R	61	71	GGATTCATGTG	7.5
14:24070401-24070602	site	oligos_7nt_test_vs_ctrl_m4	R	20	30	AAATTCATGGT	8.0
14:52084144-52084345	site	oligos_7nt_test_vs_ctrl_m4	D	64	74	GAATTCATGGA	7.7
14:56959765-56959966	site	oligos_7nt_test_vs_ctrl_m4	D	-5	5	ATATTTATGAT	7.5
14:61367149-61367350	site	oligos_7nt_test_vs_ctrl_m4	R	-11	-1	ATATTCATGTT	9.6
14:98025102-98025303	site	oligos_7nt_test_vs_ctrl_m4	R	53	63	GCATTCATGTT	8.4
15:25840375-25840576	site	oligos_7nt_test_vs_ctrl_m4	R	-53	-43	GGATTCATGTG	7.5
15:36605720-36605921	site	oligos_7nt_test_vs_ctrl_m4	D	89	99	AAATTCATGGT	8.0
15:58899099-58899300	site	oligos_7nt_test_vs_ctrl_m4	D	47	57	GTATTAATGTC	7.7
15:59211518-59211719	site	oligos_7nt_test_vs_ctrl_m4	D	-77	-67	TAATTCATGAG	8.3
15:66613091-66613292	site	oligos_7nt_test_vs_ctrl_m4	R	-44	-34	AGATTCATGTT	8.0
15:101691305-101691506	site	oligos_7nt_test_vs_ctrl_m4	D	-58	-48	ACATTCATGAG	8.3
15:103241423-103241624	site	oligos_7nt_test_vs_ctrl_m4	R	0	10	GCATTCATGGC	7.8
17:72848725-72848926	site	oligos_7nt_test_vs_ctrl_m4	D	66	76	GGATTCATGAA	7.6
18:10070233-10070434	site	oligos_7nt_test_vs_ctrl_m4	D	45	55	GAATTCATGGC	7.7
18:27598833-27599034	site	oligos_7nt_test_vs_ctrl_m4	R	-80	-70	GCATTCATGGC	7.8
18:35591178-35591379	site	oligos_7nt_test_vs_ctrl_m4	D	3	13	TAATTCATGTA	9.3
18:36288773-36288974	site	oligos_7nt_test_vs_ctrl_m4	D	-50	-40	TAATTCATGCA	8.0
18:37652466-37652667	site	oligos_7nt_test_vs_ctrl_m4	D	-52	-42	ATATTCATGGA	9.1
18:39486078-39486279	site	oligos_7nt_test_vs_ctrl_m4	D	-10	0	GTATTCATGTC	9.5
18:54699050-54699251	site	oligos_7nt_test_vs_ctrl_m4	D	67	77	CCATTCATGCG	7.8
18:64449143-64449344	site	oligos_7nt_test_vs_ctrl_m4	D	-15	-5	GAATTCATGCG	8.3
18:79959278-79959479	site	oligos_7nt_test_vs_ctrl_m4	R	10	20	GCATTCATGGC	7.8
19:40622559-40622760	site	oligos_7nt_test_vs_ctrl_m4	D	-16	-6	GCATTCATGTT	8.4
2:19993021-19993222	site	oligos_7nt_test_vs_ctrl_m4	D	-17	-7	GCATTCATGTT	8.4
2:22589571-22589772	site	oligos_7nt_test_vs_ctrl_m4	D	58	68	ATATTCATGTC	9.7
2:70023480-70023681	site	oligos_7nt_test_vs_ctrl_m4	D	-100	-90	GGATTCATGAA	7.6
2:70023480-70023681	site	oligos_7nt_test_vs_ctrl_m4	D	-53	-43	ATATACATGGT	7.6
2:83986028-83986229	site	oligos_7nt_test_vs_ctrl_m4	D	-44	-34	CTATTCATGAC	8.7
2:115864230-115864431	site	oligos_7nt_test_vs_ctrl_m4	R	-98	-88	ACATTCATGCC	8.1
2:129750027-129750228	site	oligos_7nt_test_vs_ctrl_m4	D	-41	-31	GGATTCATGTG	7.5
2:143150772-143150973	site	oligos_7nt_test_vs_ctrl_m4	D	-76	-66	ATATTCATGTA	10.1
2:155226364-155226565	site	oligos_7nt_test_vs_ctrl_m4	R	83	93	ATATACATGTG	7.7
2:157168814-157169015	site	oligos_7nt_test_vs_ctrl_m4	R	7	17	GTATTCATGCT	8.7
3:5860459-5860660	site	oligos_7nt_test_vs_ctrl_m4	R	-68	-58	CCATTCATGCG	7.8
3:16214853-16215054	site	oligos_7nt_test_vs_ctrl_m4	R	24	34	TAATTCATGGA	8.3
3:51473525-51473726	site	oligos_7nt_test_vs_ctrl_m4	R	3	13	AAATTCATGCT	7.7
3:76042639-76042840	site	oligos_7nt_test_vs_ctrl_m4	R	45	55	TGATTCATGTG	7.5
3:90361374-90361575	site	oligos_7nt_test_vs_ctrl_m4	D	21	31	TCATTCATGTA	9.0
3:90361374-90361575	site	oligos_7nt_test_vs_ctrl_m4	R	24	34	ATATACATGAA	7.7
3:94984369-94984570	site	oligos_7nt_test_vs_ctrl_m4	R	81	91	ATATACATGTT	8.0
3:152186623-152186824	site	oligos_7nt_test_vs_ctrl_m4	R	-18	-8	TTATTCATGAA	9.0
4:51253379-51253580	site	oligos_7nt_test_vs_ctrl_m4	D	89	99	GAATTCATGCG	8.3
4:65376999-65377200	site	oligos_7nt_test_vs_ctrl_m4	R	-88	-78	GCATTCATGCC	7.7
4:132827945-132828146	site	oligos_7nt_test_vs_ctrl_m4	R	14	24	GCATTCATGGG	7.5
5:43286854-43287055	site	oligos_7nt_test_vs_ctrl_m4	D	43	53	TAATTCATGTG	8.5
5:92187897-92188098	site	oligos_7nt_test_vs_ctrl_m4	D	-67	-57	TTATTTATGTA	7.7
5:149660834-149661035	site	oligos_7nt_test_vs_ctrl_m4	R	-68	-58	TCATTCATGGC	8.0
6:9889897-9890098	site	oligos_7nt_test_vs_ctrl_m4	D	-100	-90	AAATTCATGAC	8.4
6:72434114-72434315	site	oligos_7nt_test_vs_ctrl_m4	D	-68	-58	AAATTCATGTC	8.5
6:98061195-98061396	site	oligos_7nt_test_vs_ctrl_m4	D	-37	-27	CAATTCATGTT	7.6
6:99877814-99878015	site	oligos_7nt_test_vs_ctrl_m4	R	-62	-52	CCATTCATGAT	7.8
6:99877814-99878015	site	oligos_7nt_test_vs_ctrl_m4	D	-5	5	GGATTCATGTT	7.8
6:117923852-117924053	site	oligos_7nt_test_vs_ctrl_m4	D	-93	-83	CAATTCATGAT	7.6
6:125114254-125114455	site	oligos_7nt_test_vs_ctrl_m4	R	46	56	TCATTCATGCC	7.9
7:3983871-3984072	site	oligos_7nt_test_vs_ctrl_m4	D	71	81	TTATACATGTT	7.6
7:12086297-12086498	site	oligos_7nt_test_vs_ctrl_m4	D	-82	-72	AAATTCATGAT	8.4
7:39589112-39589313	site	oligos_7nt_test_vs_ctrl_m4	D	-78	-68	GGATTCATGAA	7.6
7:39589112-39589313	site	oligos_7nt_test_vs_ctrl_m4	R	-75	-65	TTATTCATGAA	9.0
7:89509699-89509900	site	oligos_7nt_test_vs_ctrl_m4	D	14	24	CCATTCATGTC	7.9
7:90208138-90208339	site	oligos_7nt_test_vs_ctrl_m4	R	-92	-82	ATATTAATGTT	7.8
7:90444189-90444390	site	oligos_7nt_test_vs_ctrl_m4	R	-55	-45	ACATTCATGCT	8.1
7:97595219-97595420	site	oligos_7nt_test_vs_ctrl_m4	R	-76	-66	GGATTCATGTC	7.9
7:104501277-104501478	site	oligos_7nt_test_vs_ctrl_m4	R	-95	-85	ATATTAATGTT	7.8
7:104501277-104501478	site	oligos_7nt_test_vs_ctrl_m4	D	-49	-39	TCATTCATGTC	8.6
7:121015324-121015525	site	oligos_7nt_test_vs_ctrl_m4	R	24	34	GGATTCATGTG	7.5
8:42247126-42247327	site	oligos_7nt_test_vs_ctrl_m4	R	78	88	TAATTCATGCT	8.1
8:86725088-86725289	site	oligos_7nt_test_vs_ctrl_m4	R	-69	-59	CTATTCATGAG	8.2
8:94405600-94405801	site	oligos_7nt_test_vs_ctrl_m4	R	-94	-84	TCATTCATGTT	8.5
8:123421397-123421598	site	oligos_7nt_test_vs_ctrl_m4	R	71	81	TCATTCATGTT	8.5
9:62060319-62060520	site	oligos_7nt_test_vs_ctrl_m4	D	-33	-23	TTATTCATGAA	9.0
9:64716807-64717008	site	oligos_7nt_test_vs_ctrl_m4	R	-8	2	CTATTCATGTT	8.6
9:75397910-75398111	site	oligos_7nt_test_vs_ctrl_m4	R	84	94	ACATTCATGGC	8.3
9:79771266-79771467	site	oligos_7nt_test_vs_ctrl_m4	D	-45	-35	ATATTTATGAT	7.5
9:96895818-96896019	site	oligos_7nt_test_vs_ctrl_m4	D	-87	-77	GGATTCATGTG	7.5
9:123689840-123690041	site	oligos_7nt_test_vs_ctrl_m4	D	31	41	GCATTCATGGC	7.8
X:15366229-15366430	site	oligos_7nt_test_vs_ctrl_m4	R	53	63	ATATACATGAA	7.7
X:33605031-33605232	site	oligos_7nt_test_vs_ctrl_m4	R	65	75	TAATTCATGAA	8.6
X:47809930-47810131	site	oligos_7nt_test_vs_ctrl_m4	R	-70	-60	GTATTCATGGT	9.1
X:51005059-51005260	site	oligos_7nt_test_vs_ctrl_m4	R	5	15	ACATTCATGTG	8.5
X:101768947-101769148	site	oligos_7nt_test_vs_ctrl_m4	D	-38	-28	CCATTCATGAT	7.8
X:141980390-141980591	site	oligos_7nt_test_vs_ctrl_m4	D	3	13	GCATTCATGGA	7.8
X:142211516-142211717	site	oligos_7nt_test_vs_ctrl_m4	D	30	40	TTATTCATGGA	8.8
X:151919646-151919847	site	oligos_7nt_test_vs_ctrl_m4	R	-15	-5	ACATTCATGTT	8.8
X:154774722-154774923	site	oligos_7nt_test_vs_ctrl_m4	D	-84	-74	TCATTCATGCT	7.8
;
; Matrices
;	matrix	name                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_test_vs_ctrl_m4	11	4	0	-16.600	9.400	26.000	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                      	matches	scored
;	1	oligos_7nt_test_vs_ctrl_m4	104	0
;		TOTAL          	104	0
; Host name	rsat
; Job started	2025-09-18.095852
; Job done	2025-09-18.095852
; Seconds	0.29
;	user	0.29
;	system	0.02
;	cuser	0.07
;	csystem	0.02
