; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:6247971-6248172	site	dyads_test_vs_ctrl_m2	D	-49	-24	TTTGCAGTTTGTTAGAAACTAAAAAT	8.4
1:8816140-8816341	site	dyads_test_vs_ctrl_m2	R	-22	3	GATTTTGAAAACTAATAACTTAAAAC	7.7
1:9746119-9746320	site	dyads_test_vs_ctrl_m2	R	-60	-35	AATCCGGACGATTACACTCCTGTAAA	8.2
1:58646716-58646917	site	dyads_test_vs_ctrl_m2	R	-43	-18	GGTCCAGTACTTTTTCTACCACAAAT	9.2
1:63165051-63165252	site	dyads_test_vs_ctrl_m2	D	-27	-2	TTTACAGTTAACATAAATTTTACATT	9.4
1:108460137-108460338	site	dyads_test_vs_ctrl_m2	R	-53	-28	TTTCCAAAAAATGTAAGATTTAAAGG	8.6
1:161818417-161818618	site	dyads_test_vs_ctrl_m2	D	-13	12	ACTTTAGATCGCCTTCGTTTTAAAGC	7.8
1:162671906-162672107	site	dyads_test_vs_ctrl_m2	D	7	32	TATATATATGTATATATATTTATATT	8.8
1:162671906-162672107	site	dyads_test_vs_ctrl_m2	R	7	32	AATATAAATATATATACATATATATA	8.9
1:162671906-162672107	site	dyads_test_vs_ctrl_m2	D	13	38	TATGTATATATATTTATATTTATATA	8.8
1:162671906-162672107	site	dyads_test_vs_ctrl_m2	R	13	38	TATATAAATATAAATATATATACATA	7.7
10:20325356-20325557	site	dyads_test_vs_ctrl_m2	R	38	63	TATGCAGTCTCTTTCAGTTTATAATT	7.6
10:39822406-39822607	site	dyads_test_vs_ctrl_m2	R	-70	-45	CCTCTAAATCTATTAATAATAATATA	7.8
10:40301972-40302173	site	dyads_test_vs_ctrl_m2	D	-72	-47	TTTTATATTAACTTTTTTTTAAAAAA	8.5
10:69019628-69019829	site	dyads_test_vs_ctrl_m2	D	-36	-11	GCTACAGTGTACTTAGATATAATAAT	8.5
10:96619324-96619525	site	dyads_test_vs_ctrl_m2	R	-42	-17	AAACCAGACCTCCACTTTCTAAAAAT	7.9
10:108278716-108278917	site	dyads_test_vs_ctrl_m2	D	-83	-58	ATTCGAATAAATTGTACATTTAAAGC	8.8
10:108278716-108278917	site	dyads_test_vs_ctrl_m2	R	-39	-14	AATATAGTATACAATACACTCAATAA	8.2
10:120923653-120923854	site	dyads_test_vs_ctrl_m2	D	52	77	TATATTATATATATATATTTTAACAC	7.7
11:3661704-3661905	site	dyads_test_vs_ctrl_m2	D	-91	-66	TTTCCTATAGCTGAATAATTCAAAAT	8.1
11:23489473-23489674	site	dyads_test_vs_ctrl_m2	R	17	42	ATACAAGTAAACTTAATTTTGATAAT	7.9
11:35776195-35776396	site	dyads_test_vs_ctrl_m2	D	-97	-72	ATTCGGAAATACTTGACTTCTAATGT	7.8
11:51600873-51601074	site	dyads_test_vs_ctrl_m2	D	-17	8	CTTACAATACATTAGATTCCCAAAAG	9.3
11:75765378-75765579	site	dyads_test_vs_ctrl_m2	D	47	72	CATGGAATTAACATTAAACTTAAATA	7.7
11:77542455-77542656	site	dyads_test_vs_ctrl_m2	D	60	85	TATCTTGGATAGTTTAGATTTAAATG	7.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m2	D	54	79	TATACAAATATATATATATATATACA	11.0
11:77709708-77709909	site	dyads_test_vs_ctrl_m2	D	62	87	TATATATATATATATACATATATATA	7.8
11:77709708-77709909	site	dyads_test_vs_ctrl_m2	R	62	87	TATATATATGTATATATATATATATA	7.7
11:77709708-77709909	site	dyads_test_vs_ctrl_m2	D	64	89	TATATATATATATACATATATATATA	7.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m2	R	64	89	TATATATATATGTATATATATATATA	7.8
11:78272016-78272217	site	dyads_test_vs_ctrl_m2	R	5	30	ATTTCAATGTTTTTGCGTTCCAAAGA	7.8
11:88083427-88083628	site	dyads_test_vs_ctrl_m2	R	44	69	GTTCCTAAGCTTTTTATATACAAAAG	8.0
11:93945469-93945670	site	dyads_test_vs_ctrl_m2	R	-21	4	ATTCCATACATTTTTACACTAAAAAG	8.7
11:98185572-98185773	site	dyads_test_vs_ctrl_m2	R	-69	-44	TCTCCAGTTCTCCTTGGTCTGTAACA	7.8
12:24493230-24493431	site	dyads_test_vs_ctrl_m2	D	51	76	TTTTCAATATCATTAGCTTTAAAAGA	8.9
12:31007094-31007295	site	dyads_test_vs_ctrl_m2	D	-100	-75	AGTGCAGTAAACGTAGATTTAAAGCA	7.6
12:54645957-54646158	site	dyads_test_vs_ctrl_m2	D	-4	21	CAACTAATGACCTTAGGTTTTAAAAA	7.6
12:55095822-55096023	site	dyads_test_vs_ctrl_m2	D	12	37	AGTCATGTGGAATATATATTTATATA	8.9
12:65043759-65043960	site	dyads_test_vs_ctrl_m2	D	42	67	ATTCCAGTAATTAGTATTTCTAAGGT	7.9
12:67037108-67037309	site	dyads_test_vs_ctrl_m2	R	-53	-28	ATTAAAAATATTTACGTTTCTACAGT	7.5
12:80108385-80108586	site	dyads_test_vs_ctrl_m2	R	-62	-37	TATCAAAACGTATTTATTGCCAAACT	7.6
12:108815790-108815991	site	dyads_test_vs_ctrl_m2	R	-86	-61	CATCTTATTAAAGTATTTTTTAAATT	7.9
13:15119277-15119478	site	dyads_test_vs_ctrl_m2	R	-30	-5	GATTTTGAAAACTAATAACTTAAAAC	7.7
13:17882287-17882488	site	dyads_test_vs_ctrl_m2	R	-70	-45	CATACTAATAAATATAATTTATAAGC	9.1
13:49494187-49494388	site	dyads_test_vs_ctrl_m2	R	-73	-48	ATTCCATAAGTCTAAGAATTTAAATC	9.4
13:69655081-69655282	site	dyads_test_vs_ctrl_m2	D	-17	8	ATTACGATTTTGAATAGTTTGAAATA	8.7
14:13903319-13903520	site	dyads_test_vs_ctrl_m2	D	23	48	AGTCCTAGTTTATTTTTATTAAAACA	9.6
14:31700030-31700231	site	dyads_test_vs_ctrl_m2	R	-87	-62	ATTCCTGTATATTTTAGAGTATAATA	8.3
14:47736218-47736419	site	dyads_test_vs_ctrl_m2	R	-19	6	TATTCAAACAGTTTTATTATAAAACT	7.7
14:47736218-47736419	site	dyads_test_vs_ctrl_m2	R	-3	22	AATGTAAAGGTCTAATTATTCAAACA	8.5
14:56927397-56927598	site	dyads_test_vs_ctrl_m2	R	65	90	CATAAAGATATCTAAAGACTAAAATA	10.2
14:66967885-66968086	site	dyads_test_vs_ctrl_m2	R	-45	-20	TGTTCAATGCTGATATCTTCGAAAAT	7.6
14:73796932-73797133	site	dyads_test_vs_ctrl_m2	D	-14	11	TCTCCAGTTCTCCTTGGTCTGTAACA	7.8
14:73955269-73955470	site	dyads_test_vs_ctrl_m2	D	70	95	GGTCCAGTACTTTTTCTACCACAAAT	9.2
14:122158883-122159084	site	dyads_test_vs_ctrl_m2	R	-33	-8	TTACAAATGCACATAATATTTAAATC	8.0
15:8358915-8359116	site	dyads_test_vs_ctrl_m2	D	-77	-52	TGTCCTGGATACTGCACATTAAAAGG	7.5
15:35814959-35815160	site	dyads_test_vs_ctrl_m2	D	1	26	TATCCAGACTTGTATAAATCAGTAAT	8.2
15:36595862-36596063	site	dyads_test_vs_ctrl_m2	R	-63	-38	AGTCCTAGATTACTTGATTTAAAACA	7.6
15:50776550-50776751	site	dyads_test_vs_ctrl_m2	R	-78	-53	AGTCCGGAATATCAAACACCATAAGT	8.2
15:63931176-63931377	site	dyads_test_vs_ctrl_m2	D	-1	24	AATATTAAATATTAGTTTTCAAAAAA	7.6
15:83405149-83405350	site	dyads_test_vs_ctrl_m2	D	-86	-61	TATTTAATACAGTATCTATTCTAAAA	7.7
15:87473797-87473998	site	dyads_test_vs_ctrl_m2	R	-65	-40	GATCCAATTATCTAATCTCTAATTCA	8.5
16:23110746-23110947	site	dyads_test_vs_ctrl_m2	D	70	95	GATTCGGTGCAATAAGTATTTAGACC	7.8
16:38245133-38245334	site	dyads_test_vs_ctrl_m2	R	71	96	TCCACAAAAAAGTTTATATTTAAAAT	7.8
16:54120008-54120209	site	dyads_test_vs_ctrl_m2	R	-82	-57	CCTCCAGTCTATATATTTTTTTAATC	8.9
17:21284007-21284208	site	dyads_test_vs_ctrl_m2	D	-2	23	GATTTTGAAAACTAATAACTTAAAAC	7.7
17:83425037-83425238	site	dyads_test_vs_ctrl_m2	R	-38	-13	ATTAATAAAGAATTAATTTTTAAAAA	7.6
18:36290118-36290319	site	dyads_test_vs_ctrl_m2	R	-41	-16	TTTACGGTCACCTCATATTTAACATT	8.3
18:42071288-42071489	site	dyads_test_vs_ctrl_m2	D	-61	-36	TGTCCTGTTCTTTTATTATTATTATT	8.1
18:43477184-43477385	site	dyads_test_vs_ctrl_m2	D	19	44	TAAACGGTATTATTAACACCAAAAGT	9.0
18:79856329-79856530	site	dyads_test_vs_ctrl_m2	R	-26	-1	TGTCTAATTCTTTATTAATTTAAAAT	10.3
18:79856329-79856530	site	dyads_test_vs_ctrl_m2	R	56	81	GATGTAATTATAATTTGATTAAAATA	7.9
19:21280422-21280623	site	dyads_test_vs_ctrl_m2	D	33	58	AATCCAGAGAATATAAAATTACTACA	7.6
19:40560570-40560771	site	dyads_test_vs_ctrl_m2	R	-79	-54	TATCTGGAGAAGTACCGTCCGAAAAT	10.0
2:22554307-22554508	site	dyads_test_vs_ctrl_m2	R	-45	-20	GCCACAGTTATGTTTATATCTAAACC	8.2
2:24593420-24593621	site	dyads_test_vs_ctrl_m2	D	40	65	AATTCAGTATCAATAGATTCCAAATC	7.6
2:39197180-39197381	site	dyads_test_vs_ctrl_m2	D	-82	-57	AATTTAGATAATTTAAAATTAAAAAA	9.0
2:78920155-78920356	site	dyads_test_vs_ctrl_m2	D	-17	8	GCTGTAGATTAGTTATGTTTAAAATG	7.8
2:109724142-109724343	site	dyads_test_vs_ctrl_m2	R	-50	-25	TACCCTGTTATGTATATATACAAATA	9.1
2:122011897-122012098	site	dyads_test_vs_ctrl_m2	R	20	45	TTTCCAATACTGTACTTTCTTAACAA	9.0
2:130837654-130837855	site	dyads_test_vs_ctrl_m2	D	-21	4	TTTAAAATACAATTCTTTTTAAAATT	8.2
2:155390752-155390953	site	dyads_test_vs_ctrl_m2	D	-92	-67	CATCCAAAACACTATATAATAAAATT	11.0
2:170463506-170463707	site	dyads_test_vs_ctrl_m2	R	-23	2	ATTGCTGATAATCATACTCCGAAAGA	7.5
3:75517357-75517558	site	dyads_test_vs_ctrl_m2	D	0	25	TTTACAGATAAATGCAGTTTAATACT	7.6
3:103354917-103355118	site	dyads_test_vs_ctrl_m2	D	-1	24	TATTGAAATATCAAAATACTGAAATA	7.8
3:116631307-116631508	site	dyads_test_vs_ctrl_m2	D	-80	-55	TTTACAAAGTAACACTTTTTTAAATA	9.1
3:116631307-116631508	site	dyads_test_vs_ctrl_m2	R	-67	-42	TGTCCAGTTATATTATTTAAAAAAGT	7.8
4:11960810-11961011	site	dyads_test_vs_ctrl_m2	D	-40	-15	ATACCAGTTAAGTATTCACCCACAAT	7.6
4:44123859-44124060	site	dyads_test_vs_ctrl_m2	D	-32	-7	GATCATGTTCATTATAATCTCAAAGG	7.8
4:79327824-79328025	site	dyads_test_vs_ctrl_m2	R	29	54	TCTCCAGTTCTCCTTGGTCTGTAACA	7.8
4:95050997-95051198	site	dyads_test_vs_ctrl_m2	R	69	94	GCTACAGTAACCCTAAGATCCTAAAA	7.5
4:119137131-119137332	site	dyads_test_vs_ctrl_m2	R	0	25	TGTCCAGATATACTATAACTTAGTGT	7.7
4:129899341-129899542	site	dyads_test_vs_ctrl_m2	D	56	81	TTTGCGGATGCACATCGACCTAAACT	7.6
4:135867227-135867428	site	dyads_test_vs_ctrl_m2	R	10	35	TGTCCTAAAATGCTTACTTTCAAACT	8.2
4:136339831-136340032	site	dyads_test_vs_ctrl_m2	D	-61	-36	ATTCCAAACGTCGTCAGACCAACAAC	8.8
5:13526296-13526497	site	dyads_test_vs_ctrl_m2	R	10	35	TTTCATATATTTTAATTTTTTAAATG	9.1
5:22486759-22486960	site	dyads_test_vs_ctrl_m2	R	20	45	AATGATGTTATCTTAACACTGAAATT	7.5
5:43286854-43287055	site	dyads_test_vs_ctrl_m2	R	-24	1	CATCCAGTCTGCATAAAATCGAATTC	7.7
5:44406182-44406383	site	dyads_test_vs_ctrl_m2	D	-61	-36	ATTCTAAGTCACTTTTATTTCCAATA	7.7
5:106617408-106617609	site	dyads_test_vs_ctrl_m2	D	-95	-70	AATAAAGAACATTAGATTTTTAAAAT	8.5
5:129982605-129982806	site	dyads_test_vs_ctrl_m2	R	47	72	TATTTAATACAGTATCTATTCTAAAA	7.7
5:142529109-142529310	site	dyads_test_vs_ctrl_m2	D	75	100	CTTCTTATGCACCTAATATCTAAATT	8.9
6:8215473-8215674	site	dyads_test_vs_ctrl_m2	R	-22	3	TCTCAAATTTTCTAAGATCCCATATT	7.5
6:27230894-27231095	site	dyads_test_vs_ctrl_m2	R	49	74	GGTCCAATAAATTACGGATTCACAAA	9.4
6:31475433-31475634	site	dyads_test_vs_ctrl_m2	D	-45	-20	TGTCCTATAGTTTATAGTTTATATTA	8.8
6:31475433-31475634	site	dyads_test_vs_ctrl_m2	R	-26	-1	TCTACATTACTCTTAATATTAATATA	9.6
6:39142630-39142831	site	dyads_test_vs_ctrl_m2	D	75	100	CTTCCAAATAAATAGCTTTAAAAAAA	8.3
6:44792892-44793093	site	dyads_test_vs_ctrl_m2	R	-92	-67	TATCCAATAATTTTGTATTTTAGTTA	9.0
6:67284021-67284222	site	dyads_test_vs_ctrl_m2	D	-94	-69	ATCCCAAACAACTAAGAATTAAAAAA	9.0
6:67284021-67284222	site	dyads_test_vs_ctrl_m2	R	-8	17	TAGCTAGAGAAGTTCGTTTTCAAAAC	7.7
6:134541666-134541867	site	dyads_test_vs_ctrl_m2	D	-28	-3	ACTTCAATACGATTAGTTTCAGAATC	7.5
6:134925209-134925410	site	dyads_test_vs_ctrl_m2	D	-43	-18	TATACTAACTTATTTATGTTAAAAAG	7.8
7:13179821-13180022	site	dyads_test_vs_ctrl_m2	R	-98	-73	CTTCCAGATGTCAAACGTTTACAAAG	8.5
7:84615563-84615764	site	dyads_test_vs_ctrl_m2	D	60	85	GATACGGTGCTCTACATTCCCAAGGA	8.2
7:90445937-90446138	site	dyads_test_vs_ctrl_m2	R	-25	0	TATACAAAGAAATATATACAAAAATG	8.8
7:128442287-128442488	site	dyads_test_vs_ctrl_m2	D	22	47	GTTCCAAACATTTCAATTTTTAAAAT	9.0
7:128446639-128446840	site	dyads_test_vs_ctrl_m2	R	-66	-41	TTTTCAATTTTTTAATATTTCATATA	8.5
8:22580329-22580530	site	dyads_test_vs_ctrl_m2	D	54	79	GGTCCAGAAAAATCTATATCAACATT	7.8
8:52196270-52196471	site	dyads_test_vs_ctrl_m2	R	3	28	TTTACAGATATCTGTAAACTATTACA	7.6
8:90247387-90247588	site	dyads_test_vs_ctrl_m2	D	5	30	AATACAGTGTTTTTATTTTCCCAAAC	7.9
8:95825606-95825807	site	dyads_test_vs_ctrl_m2	R	-10	15	TATCCAGGTCTTTTAAGATCCATAAA	8.8
8:102633596-102633797	site	dyads_test_vs_ctrl_m2	D	-76	-51	TATACTAAAATAAGAACTTTAAAATT	7.7
9:3022432-3022633	site	dyads_test_vs_ctrl_m2	D	-53	-28	CGTCCTATAGTGGACATTTCTAAATT	9.2
9:25308163-25308364	site	dyads_test_vs_ctrl_m2	R	-56	-31	TATCTAAATTAAATGTTATTACAAAA	8.0
9:88451352-88451553	site	dyads_test_vs_ctrl_m2	D	51	76	TCTACAGAAATTTAAGTTTTAAAATA	10.9
9:120960296-120960497	site	dyads_test_vs_ctrl_m2	D	6	31	ATACCAGTTGCCTTTTATCCCAAAGT	8.9
X:13521794-13521995	site	dyads_test_vs_ctrl_m2	D	-12	13	TTTCCAAAAATATAACATTCCAAAGG	9.9
X:15366229-15366430	site	dyads_test_vs_ctrl_m2	R	-90	-65	AAACCAGACCTCCACTTTCTAAAAAT	7.9
X:51004277-51004478	site	dyads_test_vs_ctrl_m2	D	-87	-62	AATACAGATATCTATTTTATTAAAAA	10.5
X:51005059-51005260	site	dyads_test_vs_ctrl_m2	D	-81	-56	AATCAAATGCAACACGATTTAAAAAA	7.7
X:68717160-68717361	site	dyads_test_vs_ctrl_m2	R	-41	-16	TTTCAAATACTATACATTCCCAGAAT	7.8
X:106992710-106992911	site	dyads_test_vs_ctrl_m2	R	-6	19	TATACTGTAAAAATTAATTTACAAAA	7.8
X:153501184-153501385	site	dyads_test_vs_ctrl_m2	R	-76	-51	TGTACAATTTAATGTATACTTAGAGA	7.8
;
; Matrices
;	matrix	name                 	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	dyads_test_vs_ctrl_m2	26	4	0	-26.800	14.100	40.900	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                 	matches	scored
;	1	dyads_test_vs_ctrl_m2	133	0
;		TOTAL          	133	0
; Host name	rsat
; Job started	2025-09-18.095854
; Job done	2025-09-18.095855
; Seconds	0.26
;	user	0.26
;	system	0.02
;	cuser	0.08
;	csystem	0.01
