; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:6247971-6248172	site	oligos_7nt_test_vs_ctrl_m1	D	-37	-27	TAGAAACTAAA	8.9
1:46193630-46193831	site	oligos_7nt_test_vs_ctrl_m1	D	-38	-28	TAGAAACTACC	9.1
1:99524210-99524411	site	oligos_7nt_test_vs_ctrl_m1	R	-56	-46	AAGAAACTAGT	8.6
1:119787766-119787967	site	oligos_7nt_test_vs_ctrl_m1	D	67	77	AAGAAACTAGG	7.6
1:155845393-155845594	site	oligos_7nt_test_vs_ctrl_m1	R	-42	-32	TAGAAACTACA	9.5
1:177450518-177450719	site	oligos_7nt_test_vs_ctrl_m1	R	-32	-22	GTGAAACTAAG	7.8
10:39822406-39822607	site	oligos_7nt_test_vs_ctrl_m1	D	-28	-18	GTGAAACTAGG	7.7
10:115431878-115432079	site	oligos_7nt_test_vs_ctrl_m1	R	-33	-23	TGGAAACTAGT	8.2
11:50379468-50379669	site	oligos_7nt_test_vs_ctrl_m1	D	25	35	GAGAAACTATG	8.5
11:65688532-65688733	site	oligos_7nt_test_vs_ctrl_m1	R	76	86	TATAAACTATA	8.1
11:75070956-75071157	site	oligos_7nt_test_vs_ctrl_m1	R	-100	-90	AAGAAACTAGG	7.6
11:84832690-84832891	site	oligos_7nt_test_vs_ctrl_m1	D	23	33	ACGAAACTAAA	9.0
12:34385176-34385377	site	oligos_7nt_test_vs_ctrl_m1	D	71	81	GTTAAACTATA	7.5
12:40036117-40036318	site	oligos_7nt_test_vs_ctrl_m1	R	-19	-9	GAGAAACTACA	9.2
12:51768899-51769100	site	oligos_7nt_test_vs_ctrl_m1	D	33	43	CTGAAACTATA	9.2
12:105838741-105838942	site	oligos_7nt_test_vs_ctrl_m1	R	-75	-65	TGGAAACTAGA	8.0
12:109359254-109359455	site	oligos_7nt_test_vs_ctrl_m1	R	57	67	GAGAAACTAAT	8.8
13:63446963-63447164	site	oligos_7nt_test_vs_ctrl_m1	R	-3	7	ACGAAACTAGA	9.0
13:111718164-111718365	site	oligos_7nt_test_vs_ctrl_m1	D	52	62	GGGAAACTATT	8.9
14:37655439-37655640	site	oligos_7nt_test_vs_ctrl_m1	R	-98	-88	AAGAAACTAAA	8.5
15:71794713-71794914	site	oligos_7nt_test_vs_ctrl_m1	D	17	27	TATAAACTACG	7.7
15:102498532-102498733	site	oligos_7nt_test_vs_ctrl_m1	R	-55	-45	CAGAAACTACA	8.8
15:103244280-103244481	site	oligos_7nt_test_vs_ctrl_m1	R	69	79	CAGAAACTAAA	8.2
16:8843031-8843232	site	oligos_7nt_test_vs_ctrl_m1	D	49	59	CGGAAACTAGC	8.4
16:20656549-20656750	site	oligos_7nt_test_vs_ctrl_m1	R	41	51	ATGAAACTATA	9.7
16:30067583-30067784	site	oligos_7nt_test_vs_ctrl_m1	D	81	91	GAGAAAATATA	7.7
16:38243318-38243519	site	oligos_7nt_test_vs_ctrl_m1	R	47	57	TTAAAACTATA	7.7
17:10206843-10207044	site	oligos_7nt_test_vs_ctrl_m1	D	2	12	ATGAAACTACT	9.1
17:39636739-39636940	site	oligos_7nt_test_vs_ctrl_m1	D	-98	-88	CAGAAACTAAA	8.2
17:74702371-74702572	site	oligos_7nt_test_vs_ctrl_m1	D	-17	-7	AAGAAACTAAT	8.7
17:74702371-74702572	site	oligos_7nt_test_vs_ctrl_m1	D	13	23	CTGAAACTATA	9.2
17:78491587-78491788	site	oligos_7nt_test_vs_ctrl_m1	D	-50	-40	TGGAAACTACT	8.7
18:35860873-35861074	site	oligos_7nt_test_vs_ctrl_m1	D	-7	3	ACGAATCTATA	7.5
18:36610291-36610492	site	oligos_7nt_test_vs_ctrl_m1	D	13	23	TGGAAACTACG	8.9
18:90311815-90312016	site	oligos_7nt_test_vs_ctrl_m1	R	-28	-18	CAGAAACTACA	8.8
19:14561454-14561655	site	oligos_7nt_test_vs_ctrl_m1	D	54	64	GATAAACTATA	7.8
19:24550692-24550893	site	oligos_7nt_test_vs_ctrl_m1	R	-59	-49	GTGAAACTAAA	8.5
19:29809764-29809965	site	oligos_7nt_test_vs_ctrl_m1	R	-91	-81	ATGAAACTATT	9.2
19:39052767-39052968	site	oligos_7nt_test_vs_ctrl_m1	R	-56	-46	AGGAAACTATA	9.4
2:5961449-5961650	site	oligos_7nt_test_vs_ctrl_m1	R	-58	-48	CAGAAACTAAT	8.4
2:23224970-23225171	site	oligos_7nt_test_vs_ctrl_m1	D	48	58	AAGAAACTAGA	8.5
2:37374413-37374614	site	oligos_7nt_test_vs_ctrl_m1	D	11	21	CAGAAACTATT	8.8
2:72936978-72937179	site	oligos_7nt_test_vs_ctrl_m1	R	-29	-19	TAGAAACTAGA	8.9
2:103766550-103766751	site	oligos_7nt_test_vs_ctrl_m1	R	-41	-31	AGGAAACTATT	8.9
2:107309854-107310055	site	oligos_7nt_test_vs_ctrl_m1	R	-64	-54	ATGAAACTATA	9.7
2:122220088-122220289	site	oligos_7nt_test_vs_ctrl_m1	D	50	60	AAGAAACTAGG	7.6
2:155390752-155390953	site	oligos_7nt_test_vs_ctrl_m1	D	67	77	GTGAAACTAAT	8.8
2:156056391-156056592	site	oligos_7nt_test_vs_ctrl_m1	D	35	45	AGGAAACTAAA	8.2
2:156178847-156179048	site	oligos_7nt_test_vs_ctrl_m1	D	46	56	GTGAAACTACT	9.2
3:136935211-136935412	site	oligos_7nt_test_vs_ctrl_m1	D	86	96	AATAAACTATA	7.7
4:74303168-74303369	site	oligos_7nt_test_vs_ctrl_m1	D	9	19	TTGAAACTATT	8.8
4:80534466-80534667	site	oligos_7nt_test_vs_ctrl_m1	D	-62	-52	GTGAAACTATA	9.7
4:135867227-135867428	site	oligos_7nt_test_vs_ctrl_m1	D	64	74	TGGAAACTAAT	8.3
5:45692954-45693155	site	oligos_7nt_test_vs_ctrl_m1	D	56	66	AGGAAACTAGA	8.2
5:92187897-92188098	site	oligos_7nt_test_vs_ctrl_m1	D	-54	-44	GAGAAACTAAA	8.6
5:92187897-92188098	site	oligos_7nt_test_vs_ctrl_m1	D	-3	7	GAGAAACTAGG	7.8
5:109543469-109543670	site	oligos_7nt_test_vs_ctrl_m1	D	-45	-35	TTGAAACTATA	9.4
6:6351040-6351241	site	oligos_7nt_test_vs_ctrl_m1	D	-56	-46	CAGAAACTAAA	8.2
6:31475433-31475634	site	oligos_7nt_test_vs_ctrl_m1	R	-40	-30	TATAAACTATA	8.1
6:31475433-31475634	site	oligos_7nt_test_vs_ctrl_m1	R	-33	-23	TATAAACTATA	8.1
6:71683735-71683936	site	oligos_7nt_test_vs_ctrl_m1	D	-92	-82	AAGAAACTACT	9.1
6:134541666-134541867	site	oligos_7nt_test_vs_ctrl_m1	R	-17	-7	CTGAAACTAAT	8.2
6:134924326-134924527	site	oligos_7nt_test_vs_ctrl_m1	R	60	70	TAAAAACTATA	7.8
7:7062290-7062491	site	oligos_7nt_test_vs_ctrl_m1	R	-20	-10	ATAAAACTATA	8.0
7:10656593-10656794	site	oligos_7nt_test_vs_ctrl_m1	R	-52	-42	AAGAAACTAGT	8.6
7:61070404-61070605	site	oligos_7nt_test_vs_ctrl_m1	D	-77	-67	GTGAAACTAAA	8.5
7:89509699-89509900	site	oligos_7nt_test_vs_ctrl_m1	R	-69	-59	AGGAAACTACC	8.5
8:111309947-111310148	site	oligos_7nt_test_vs_ctrl_m1	R	44	54	CGGACACTATA	7.6
8:112013923-112014124	site	oligos_7nt_test_vs_ctrl_m1	R	78	88	TGGAAACTATA	9.3
8:122841790-122841991	site	oligos_7nt_test_vs_ctrl_m1	D	8	18	AAGAAACTAGT	8.6
9:31053329-31053530	site	oligos_7nt_test_vs_ctrl_m1	D	-80	-70	GGGAAACTAAA	8.2
9:83409687-83409888	site	oligos_7nt_test_vs_ctrl_m1	D	-70	-60	CGGACACTATA	7.6
9:118837629-118837830	site	oligos_7nt_test_vs_ctrl_m1	R	46	56	AAGAAACTAGT	8.6
X:15365322-15365523	site	oligos_7nt_test_vs_ctrl_m1	D	34	44	CAGAAACTACA	8.8
X:74261135-74261336	site	oligos_7nt_test_vs_ctrl_m1	D	-32	-22	AAGAAACTAGT	8.6
X:88971143-88971344	site	oligos_7nt_test_vs_ctrl_m1	D	-55	-45	GGGAAACTACA	8.8
X:106992710-106992911	site	oligos_7nt_test_vs_ctrl_m1	R	88	98	GGGAAACTACA	8.8
;
; Matrices
;	matrix	name                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_test_vs_ctrl_m1	11	4	0	-16.000	9.300	25.300	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                      	matches	scored
;	1	oligos_7nt_test_vs_ctrl_m1	77	0
;		TOTAL          	77	0
; Host name	rsat
; Job started	2025-09-18.095849
; Job done	2025-09-18.095849
; Seconds	0.27
;	user	0.27
;	system	0
;	cuser	0.1
;	csystem	0.02
