; position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_ctrl_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title IpnullvsNT -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab
; Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
; Sequence file                	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_ctrl_purged_ml40_mis3.fasta
; Sequence format              	fasta
; Sequence type                	dna
; Output file                  	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab
; Oligo length                 	1
; Occurrences counted  on a single  strands
; Conditions of applicability checked.
; Background model estimation: homogeneous repartition
; Sequence statistics:
;	Nb of sequences              	3101
;	Sum of sequence lengths      	623301
;	Min sequence length          	0
;	Max sequence length          	201
;	Average sequence length      	201
;	Possible positions           	623301
; Oligonucleotide statistics:
;	Total occurrences    	480273
; Position interval parameters:
;	Position interval    	20
;	Number of windows    	11
;	Total positions      	623301
;	Degrees of freedom   	10
; K-mer clustering parameters:
;	Number of clusters   	0
;	Clustering method    	complete
; Position intervals:
;	window	[min,max]	mid	seq	occ
;	1	-6	[-119,-100]	-109.5	3101	3101
;	2	-5	[-99,-80]	-89.5	3101	62020
;	3	-4	[-79,-60]	-69.5	3101	62020
;	4	-3	[-59,-40]	-49.5	3101	62020
;	5	-2	[-39,-20]	-29.5	3101	62020
;	6	-1	[-19,0]	-9.5	3101	62020
;	7	0	[1,20]	10.5	3101	62020
;	8	1	[21,40]	30.5	3101	62020
;	9	2	[41,60]	50.5	3101	62020
;	10	3	[61,80]	70.5	3101	62020
;	11	4	[81,100]	90.5	3101	62020
;
; Column headers
;	1	seq            	pattern sequence
;	2	id             	pattern identifier
;	3	occ            	pattern occurrences
;	4	chi2           	observed chi-square
;	5	df             	degrees of freedom
;	6	Pval           	P-value (probability for one word to be a false positive)
;	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
;	8	sig            	Significance (sig = -log10(Eval))
;	9	rank           	rank of the pattern according to sorting criterion
;	10	-109.5         	occurrences in window	1	[-119,-100]
;	11	-89.5          	occurrences in window	2	[-99,-80]
;	12	-69.5          	occurrences in window	3	[-79,-60]
;	13	-49.5          	occurrences in window	4	[-59,-40]
;	14	-29.5          	occurrences in window	5	[-39,-20]
;	15	-9.5           	occurrences in window	6	[-19,0]
;	16	10.5           	occurrences in window	7	[1,20]
;	17	30.5           	occurrences in window	8	[21,40]
;	18	50.5           	occurrences in window	9	[41,60]
;	19	70.5           	occurrences in window	10	[61,80]
;	20	90.5           	occurrences in window	11	[81,100]
#seq	id	occ	chi2	df	Pval	Eval	sig	rank	-109.5	-89.5	-69.5	-49.5	-29.5	-9.5	10.5	30.5	50.5	70.5	90.5
t	t	129779	134.8	10	5.0e-24	2e-23	22.70	1	696	13799	13038	12607	12537	12436	12648	12761	12853	12917	13487
g	g	109615	122.6	10	1.5e-21	5.9e-21	20.23	2	581	11423	10952	10856	10693	10851	10444	10480	10637	11092	11606
a	a	130773	114.5	10	6.6e-20	2.6e-19	18.58	3	745	13451	13020	12663	12767	12582	12601	12896	13124	13186	13738
c	c	110106	68.6	10	8.3e-11	3.3e-10	9.48	4	573	11414	10986	10635	10648	10645	10954	10809	10983	11054	11405
; Host name	rsat
; Job started	2025-09-18.095808
; Job done	2025-09-18.095811
; Seconds	2.99
;	user	2.99
;	system	0
;	cuser	0.01
;	csystem	0
