; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:110177455-110177656	site	oligos_7nt_test_vs_ctrl_m2	R	-80	-70	GCCTCACAAGC	7.6
1:177450518-177450719	site	oligos_7nt_test_vs_ctrl_m2	R	-59	-49	CACTCACAATG	8.1
1:178328353-178328554	site	oligos_7nt_test_vs_ctrl_m2	D	-15	-5	GACTCACAATT	8.5
1:178332080-178332281	site	oligos_7nt_test_vs_ctrl_m2	D	-90	-80	ACCTCACAATC	8.4
1:191909656-191909857	site	oligos_7nt_test_vs_ctrl_m2	R	-9	1	GACTCACAAAG	8.0
10:49592968-49593169	site	oligos_7nt_test_vs_ctrl_m2	D	-92	-82	GTCTCACAAGA	8.2
10:69019628-69019829	site	oligos_7nt_test_vs_ctrl_m2	D	-92	-82	GGCTCACAACC	8.1
10:99758732-99758933	site	oligos_7nt_test_vs_ctrl_m2	R	-50	-40	CTCTCACAAGA	7.9
10:126324975-126325176	site	oligos_7nt_test_vs_ctrl_m2	R	-92	-82	AGCTCACAAGA	7.6
11:6467663-6467864	site	oligos_7nt_test_vs_ctrl_m2	D	83	93	GTCTCACAATT	8.4
11:23296693-23296894	site	oligos_7nt_test_vs_ctrl_m2	R	4	14	GGCTCACAAAT	7.7
11:30100091-30100292	site	oligos_7nt_test_vs_ctrl_m2	D	2	12	GCCTCACAAAA	7.9
11:65688532-65688733	site	oligos_7nt_test_vs_ctrl_m2	D	-28	-18	AGCTCACAATG	7.6
11:75724927-75725128	site	oligos_7nt_test_vs_ctrl_m2	D	55	65	GGCTCACAACC	8.1
11:80394288-80394489	site	oligos_7nt_test_vs_ctrl_m2	D	84	94	CACTCACAACC	8.5
11:86711426-86711627	site	oligos_7nt_test_vs_ctrl_m2	R	-22	-12	TACTCACAATG	8.7
11:94292298-94292499	site	oligos_7nt_test_vs_ctrl_m2	D	57	67	CGCTCACAACA	9.0
11:101321863-101322064	site	oligos_7nt_test_vs_ctrl_m2	R	-69	-59	GACTCACAAAG	8.0
11:107917321-107917522	site	oligos_7nt_test_vs_ctrl_m2	D	22	32	GGCTCACAACC	8.1
13:23747003-23747204	site	oligos_7nt_test_vs_ctrl_m2	D	80	90	GGCTCACAACA	8.1
13:70006887-70007088	site	oligos_7nt_test_vs_ctrl_m2	D	85	95	CACTCACAATC	8.7
13:104430996-104431197	site	oligos_7nt_test_vs_ctrl_m2	R	-50	-40	TGCTCACAATG	7.6
13:119775964-119776165	site	oligos_7nt_test_vs_ctrl_m2	D	-38	-28	TTCTCACAATG	7.9
14:52097293-52097494	site	oligos_7nt_test_vs_ctrl_m2	R	32	42	CCCTCACAAAC	8.0
14:66967885-66968086	site	oligos_7nt_test_vs_ctrl_m2	R	65	75	GACTCACAAAG	8.0
14:74223619-74223820	site	oligos_7nt_test_vs_ctrl_m2	D	76	86	ATCTCACAACT	8.2
15:48617935-48618136	site	oligos_7nt_test_vs_ctrl_m2	R	12	22	AACTCACAATC	8.7
15:73407648-73407849	site	oligos_7nt_test_vs_ctrl_m2	R	-58	-48	TCCTCACAATA	8.9
15:74081163-74081364	site	oligos_7nt_test_vs_ctrl_m2	R	-32	-22	AGCTCACAACA	8.0
15:93412881-93413082	site	oligos_7nt_test_vs_ctrl_m2	R	-22	-12	GACTCACAAGG	7.7
15:100619461-100619662	site	oligos_7nt_test_vs_ctrl_m2	D	-15	-5	TTCTCACAATG	7.9
16:20654882-20655083	site	oligos_7nt_test_vs_ctrl_m2	D	-57	-47	GGCTCACAATG	7.7
16:23113303-23113504	site	oligos_7nt_test_vs_ctrl_m2	R	66	76	TCCTCACAAGA	7.8
17:78491587-78491788	site	oligos_7nt_test_vs_ctrl_m2	D	4	14	GACTCACAATT	8.5
18:42071288-42071489	site	oligos_7nt_test_vs_ctrl_m2	R	87	97	GGCTCACAACC	8.1
18:85848456-85848657	site	oligos_7nt_test_vs_ctrl_m2	R	52	62	GACTCACAATT	8.5
2:9041229-9041430	site	oligos_7nt_test_vs_ctrl_m2	D	38	48	TTCTCACAAAA	8.1
2:24992711-24992912	site	oligos_7nt_test_vs_ctrl_m2	D	78	88	AACTCACAAGG	7.5
2:25223158-25223359	site	oligos_7nt_test_vs_ctrl_m2	D	23	33	TTCTCACAACG	8.8
2:60270160-60270361	site	oligos_7nt_test_vs_ctrl_m2	D	-9	1	AGCTCACAACC	8.0
2:87393719-87393920	site	oligos_7nt_test_vs_ctrl_m2	D	-36	-26	CTCTCACAACA	8.3
2:90905786-90905987	site	oligos_7nt_test_vs_ctrl_m2	D	47	57	GGCTCACAACC	8.1
2:155421148-155421349	site	oligos_7nt_test_vs_ctrl_m2	R	89	99	GCCTCACAAGC	7.6
3:5415285-5415486	site	oligos_7nt_test_vs_ctrl_m2	D	-100	-90	CTCTCACAAAA	8.1
3:9264662-9264863	site	oligos_7nt_test_vs_ctrl_m2	D	88	98	TGCTCACAAGC	7.5
3:152427792-152427993	site	oligos_7nt_test_vs_ctrl_m2	R	-55	-45	TTCTCACAATC	8.5
4:74303168-74303369	site	oligos_7nt_test_vs_ctrl_m2	D	81	91	ACCTCACAAAT	7.9
4:87841073-87841274	site	oligos_7nt_test_vs_ctrl_m2	R	41	51	GCCTCACAAAT	7.8
4:129839492-129839693	site	oligos_7nt_test_vs_ctrl_m2	D	43	53	AACTCACAACC	8.5
4:141522189-141522390	site	oligos_7nt_test_vs_ctrl_m2	R	-7	3	AGCTCACAACT	7.7
5:7179566-7179767	site	oligos_7nt_test_vs_ctrl_m2	R	51	61	TTCTCACAACG	8.8
5:40372512-40372713	site	oligos_7nt_test_vs_ctrl_m2	D	-76	-66	GACTCACAAAA	8.5
5:90132313-90132514	site	oligos_7nt_test_vs_ctrl_m2	D	39	49	GACTCATAATA	7.6
5:108085485-108085686	site	oligos_7nt_test_vs_ctrl_m2	R	70	80	GGCTCACAACC	8.1
6:31475433-31475634	site	oligos_7nt_test_vs_ctrl_m2	D	82	92	GGCTCACAACC	8.1
6:98173003-98173204	site	oligos_7nt_test_vs_ctrl_m2	D	74	84	CCCTCACAATA	8.8
7:4794350-4794551	site	oligos_7nt_test_vs_ctrl_m2	R	-66	-56	AGCTCACAAAC	7.9
7:67268254-67268455	site	oligos_7nt_test_vs_ctrl_m2	D	11	21	CTCTCACAACC	8.3
7:90444189-90444390	site	oligos_7nt_test_vs_ctrl_m2	D	75	85	GCCTCACAACC	8.1
7:100640717-100640918	site	oligos_7nt_test_vs_ctrl_m2	R	-9	1	ATCTCACAATA	9.2
7:123002201-123002402	site	oligos_7nt_test_vs_ctrl_m2	R	19	29	AACTCACAATT	8.3
8:25640813-25641014	site	oligos_7nt_test_vs_ctrl_m2	D	-91	-81	CGCTCACAAAT	8.7
8:27500775-27500976	site	oligos_7nt_test_vs_ctrl_m2	R	-64	-54	TACTCACAACA	9.2
8:80111162-80111363	site	oligos_7nt_test_vs_ctrl_m2	D	-57	-47	ACCTCACAACC	8.2
9:66372298-66372499	site	oligos_7nt_test_vs_ctrl_m2	R	6	16	AGCTCACAACT	7.7
9:71844372-71844573	site	oligos_7nt_test_vs_ctrl_m2	D	19	29	CTCTCACAATA	9.0
9:78820865-78821066	site	oligos_7nt_test_vs_ctrl_m2	R	-59	-49	AGCTCACAATG	7.6
X:13161330-13161531	site	oligos_7nt_test_vs_ctrl_m2	R	-32	-22	TTCTCACAAAT	8.0
X:103961653-103961854	site	oligos_7nt_test_vs_ctrl_m2	D	-72	-62	GGCTCACAAAA	7.9
X:139714265-139714466	site	oligos_7nt_test_vs_ctrl_m2	R	4	14	TCCTCACAAGC	7.6
X:156105357-156105558	site	oligos_7nt_test_vs_ctrl_m2	D	35	45	GTCTCACAAAA	8.4
;
; Matrices
;	matrix	name                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_test_vs_ctrl_m2	11	4	0	-19.100	9.400	28.500	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                      	matches	scored
;	1	oligos_7nt_test_vs_ctrl_m2	71	0
;		TOTAL          	71	0
; Host name	rsat
; Job started	2025-09-18.095850
; Job done	2025-09-18.095850
; Seconds	0.27
;	user	0.27
;	system	0
;	cuser	0.11
;	csystem	0.01
