; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:14839904-14840105	site	oligos_6nt_test_vs_ctrl_m1	R	-87	-78	AAATGGAGGA	7.6
1:24613180-24613381	site	oligos_6nt_test_vs_ctrl_m1	D	-78	-69	AAATGGAGAC	7.6
1:24613180-24613381	site	oligos_6nt_test_vs_ctrl_m1	D	68	77	ACATGGAGTC	7.7
1:36472236-36472437	site	oligos_6nt_test_vs_ctrl_m1	D	-22	-13	CGATGGAGCT	8.1
1:55014753-55014954	site	oligos_6nt_test_vs_ctrl_m1	R	29	38	TGATGGAGAC	7.6
1:55760127-55760328	site	oligos_6nt_test_vs_ctrl_m1	R	-49	-40	AAATGGAGAC	7.6
1:63058063-63058264	site	oligos_6nt_test_vs_ctrl_m1	D	-98	-89	CTATGGAGCT	7.5
1:75216069-75216270	site	oligos_6nt_test_vs_ctrl_m1	D	84	93	TGATGGAGGA	7.6
1:97935099-97935300	site	oligos_6nt_test_vs_ctrl_m1	D	52	61	ACATGGAGTG	7.8
1:139446980-139447181	site	oligos_6nt_test_vs_ctrl_m1	D	19	28	CAATGGAGTA	7.5
1:156786766-156786967	site	oligos_6nt_test_vs_ctrl_m1	D	-56	-47	AGATGGAGAA	8.1
1:157175654-157175855	site	oligos_6nt_test_vs_ctrl_m1	R	47	56	CTATGGAGCA	7.7
1:161726737-161726938	site	oligos_6nt_test_vs_ctrl_m1	R	79	88	CCATGGAGAC	7.5
1:180093957-180094158	site	oligos_6nt_test_vs_ctrl_m1	D	-26	-17	TCATGGAGAT	7.8
1:184037289-184037490	site	oligos_6nt_test_vs_ctrl_m1	D	-10	-1	TCATGGAGTA	8.0
1:189277591-189277792	site	oligos_6nt_test_vs_ctrl_m1	R	63	72	GCATGGAGAT	7.8
10:8601218-8601419	site	oligos_6nt_test_vs_ctrl_m1	R	-86	-77	CCATGGAGCG	8.1
10:14746811-14747012	site	oligos_6nt_test_vs_ctrl_m1	D	24	33	CCATGGAGGA	7.5
10:30011723-30011924	site	oligos_6nt_test_vs_ctrl_m1	D	-24	-15	ACATGGAGAA	8.2
10:30781417-30781618	site	oligos_6nt_test_vs_ctrl_m1	R	-84	-75	AGATGGAGAA	8.1
10:31250289-31250490	site	oligos_6nt_test_vs_ctrl_m1	R	-69	-60	AGATGGAGTT	7.7
10:40566180-40566381	site	oligos_6nt_test_vs_ctrl_m1	D	14	23	TGATGGAGGA	7.6
10:58480024-58480225	site	oligos_6nt_test_vs_ctrl_m1	D	75	84	AGATGGAGAA	8.1
10:62764325-62764526	site	oligos_6nt_test_vs_ctrl_m1	R	-99	-90	TGATGGAGAA	7.7
10:73202476-73202677	site	oligos_6nt_test_vs_ctrl_m1	D	-89	-80	TTATGGAGGA	8.1
10:73202476-73202677	site	oligos_6nt_test_vs_ctrl_m1	D	-26	-17	CTATGGAGGT	8.0
10:73202476-73202677	site	oligos_6nt_test_vs_ctrl_m1	D	-5	4	CTATGGAGCA	7.7
10:80293829-80294030	site	oligos_6nt_test_vs_ctrl_m1	R	67	76	TGATGGAGAA	7.7
10:84738423-84738624	site	oligos_6nt_test_vs_ctrl_m1	D	-11	-2	GCATGGAGGA	7.6
10:84738423-84738624	site	oligos_6nt_test_vs_ctrl_m1	D	29	38	GCATGGAGGA	7.6
10:84738423-84738624	site	oligos_6nt_test_vs_ctrl_m1	D	69	78	GCATGGAGGA	7.6
10:85907638-85907839	site	oligos_6nt_test_vs_ctrl_m1	R	76	85	CCATGGAGAA	7.6
10:116972810-116973011	site	oligos_6nt_test_vs_ctrl_m1	D	-69	-60	TGATGGAGAA	7.7
10:116972810-116973011	site	oligos_6nt_test_vs_ctrl_m1	R	80	89	CCATGGAGAA	7.6
10:119216409-119216610	site	oligos_6nt_test_vs_ctrl_m1	D	4	13	ACATGGAGTC	7.7
10:128076614-128076815	site	oligos_6nt_test_vs_ctrl_m1	D	39	48	GCATGGAGGA	7.6
10:128438180-128438381	site	oligos_6nt_test_vs_ctrl_m1	R	-83	-74	CGATGGAGGC	8.2
10:128679305-128679506	site	oligos_6nt_test_vs_ctrl_m1	D	63	72	GGATGGAGGT	7.7
10:129665038-129665239	site	oligos_6nt_test_vs_ctrl_m1	D	71	80	AAATGGAGGA	7.6
10:129665519-129665720	site	oligos_6nt_test_vs_ctrl_m1	R	-62	-53	TAATGGAGAA	7.9
11:5080527-5080728	site	oligos_6nt_test_vs_ctrl_m1	R	-51	-42	ATATGGAGAG	8.6
11:16515123-16515324	site	oligos_6nt_test_vs_ctrl_m1	D	-6	3	TGATGGAGTA	8.0
11:17199750-17199951	site	oligos_6nt_test_vs_ctrl_m1	D	-5	4	ACATGGAGTT	7.8
11:31934624-31934825	site	oligos_6nt_test_vs_ctrl_m1	R	-55	-46	GTATGGAGAA	8.4
11:69680169-69680370	site	oligos_6nt_test_vs_ctrl_m1	R	-80	-71	CCATGGAGGA	7.5
11:69990038-69990239	site	oligos_6nt_test_vs_ctrl_m1	D	46	55	TTATGGAGTC	7.6
11:73611547-73611748	site	oligos_6nt_test_vs_ctrl_m1	R	-61	-52	CAATGGAGTA	7.5
11:75724927-75725128	site	oligos_6nt_test_vs_ctrl_m1	D	-17	-8	GGATGGAGAG	7.7
11:77295443-77295644	site	oligos_6nt_test_vs_ctrl_m1	D	-19	-10	ACATGGAGAG	8.1
11:78160160-78160361	site	oligos_6nt_test_vs_ctrl_m1	D	-28	-19	AGATGGAGAG	8.0
11:78272016-78272217	site	oligos_6nt_test_vs_ctrl_m1	D	-41	-32	GCATGGAGAG	7.6
11:86707074-86707275	site	oligos_6nt_test_vs_ctrl_m1	R	-2	7	TTATGGAGTA	8.4
11:88051011-88051212	site	oligos_6nt_test_vs_ctrl_m1	D	-35	-26	TCATGGAGCG	8.2
11:97969034-97969235	site	oligos_6nt_test_vs_ctrl_m1	D	-70	-61	GCATGGAGAT	7.8
11:100257460-100257661	site	oligos_6nt_test_vs_ctrl_m1	R	-32	-23	AGATGGAGCA	7.7
11:100320907-100321108	site	oligos_6nt_test_vs_ctrl_m1	D	-22	-13	ATATGGAGAA	8.7
11:100958963-100959164	site	oligos_6nt_test_vs_ctrl_m1	R	5	14	AGATGGAGAA	8.1
11:100970068-100970269	site	oligos_6nt_test_vs_ctrl_m1	R	41	50	AGATGGAGGG	7.8
11:102605760-102605961	site	oligos_6nt_test_vs_ctrl_m1	R	-94	-85	AGATGGAGCT	7.5
11:109396165-109396366	site	oligos_6nt_test_vs_ctrl_m1	R	-64	-55	TTATGGAGAC	8.1
11:120347703-120347904	site	oligos_6nt_test_vs_ctrl_m1	R	-56	-47	ACATGGAGAA	8.2
12:4226489-4226690	site	oligos_6nt_test_vs_ctrl_m1	D	-76	-67	GCATGGAGGA	7.6
12:11252195-11252396	site	oligos_6nt_test_vs_ctrl_m1	D	84	93	GTATGGAGGG	8.1
12:18364940-18365141	site	oligos_6nt_test_vs_ctrl_m1	D	-65	-56	TCATGGAGGT	7.6
12:18364940-18365141	site	oligos_6nt_test_vs_ctrl_m1	D	-36	-27	CTATGGAGCA	7.7
12:34385176-34385377	site	oligos_6nt_test_vs_ctrl_m1	D	-18	-9	ACATGGAGTT	7.8
12:35773186-35773387	site	oligos_6nt_test_vs_ctrl_m1	R	29	38	TCATGGAGGT	7.6
12:51134690-51134891	site	oligos_6nt_test_vs_ctrl_m1	D	81	90	GGATGGAGAT	7.9
12:110639725-110639926	site	oligos_6nt_test_vs_ctrl_m1	R	40	49	GCATGGAGAA	7.7
12:110640562-110640763	site	oligos_6nt_test_vs_ctrl_m1	D	62	71	ACATGGAGGT	8.1
12:110793493-110793694	site	oligos_6nt_test_vs_ctrl_m1	D	58	67	CTATGGAGTT	7.7
12:116507537-116507738	site	oligos_6nt_test_vs_ctrl_m1	R	25	34	AAATGGAGAT	7.7
13:24812698-24812899	site	oligos_6nt_test_vs_ctrl_m1	D	-17	-8	AAATGGAGAA	7.7
13:34074546-34074747	site	oligos_6nt_test_vs_ctrl_m1	R	-64	-55	AGATGGAGTT	7.7
13:35991102-35991303	site	oligos_6nt_test_vs_ctrl_m1	R	-72	-63	GCATGGAGTA	8.0
13:64624414-64624615	site	oligos_6nt_test_vs_ctrl_m1	R	3	12	CTATGGAGAA	8.1
13:64914168-64914369	site	oligos_6nt_test_vs_ctrl_m1	D	-64	-55	ATATGGAGAA	8.7
13:81065637-81065838	site	oligos_6nt_test_vs_ctrl_m1	R	36	45	CGATGGAGGG	8.4
13:98842738-98842939	site	oligos_6nt_test_vs_ctrl_m1	R	60	69	AAATGGAGAG	7.5
13:107726003-107726204	site	oligos_6nt_test_vs_ctrl_m1	D	-65	-56	GGATGGAGGT	7.7
13:108671041-108671242	site	oligos_6nt_test_vs_ctrl_m1	R	77	86	TCATGGAGAG	7.6
13:116153831-116154032	site	oligos_6nt_test_vs_ctrl_m1	R	86	95	ACATGGAGCT	7.7
13:119699751-119699952	site	oligos_6nt_test_vs_ctrl_m1	D	48	57	TGATGGAGAG	7.6
14:8800014-8800215	site	oligos_6nt_test_vs_ctrl_m1	R	-15	-6	GGATGGAGAT	7.9
14:18270227-18270428	site	oligos_6nt_test_vs_ctrl_m1	R	86	95	CTATGGAGGA	8.0
14:40006417-40006618	site	oligos_6nt_test_vs_ctrl_m1	D	-71	-62	ATATGGAGAA	8.7
14:53213783-53213984	site	oligos_6nt_test_vs_ctrl_m1	D	79	88	CTATGGAGGA	8.0
14:54468347-54468548	site	oligos_6nt_test_vs_ctrl_m1	D	73	82	CGATGGAGCG	9.1
14:61324887-61325088	site	oligos_6nt_test_vs_ctrl_m1	R	-97	-88	CTATGGAGGT	8.0
14:92603330-92603531	site	oligos_6nt_test_vs_ctrl_m1	D	79	88	TAATGGAGGT	7.8
15:8351574-8351775	site	oligos_6nt_test_vs_ctrl_m1	D	-61	-52	TTATGGAGTC	7.6
15:8928677-8928878	site	oligos_6nt_test_vs_ctrl_m1	R	60	69	CCATGGAGAA	7.6
15:12136444-12136645	site	oligos_6nt_test_vs_ctrl_m1	D	28	37	ATATGGAGGC	8.2
15:18164006-18164207	site	oligos_6nt_test_vs_ctrl_m1	D	-52	-43	CCATGGAGAA	7.6
15:37868261-37868462	site	oligos_6nt_test_vs_ctrl_m1	D	-78	-69	CTATGGAGGA	8.0
15:50746993-50747194	site	oligos_6nt_test_vs_ctrl_m1	D	77	86	ACATGGAGTC	7.7
15:58900176-58900377	site	oligos_6nt_test_vs_ctrl_m1	D	-92	-83	AAATGGAGTA	7.9
15:59211518-59211719	site	oligos_6nt_test_vs_ctrl_m1	D	-89	-80	GCATGGAGGA	7.6
15:73343126-73343327	site	oligos_6nt_test_vs_ctrl_m1	R	-79	-70	GCATGGAGAT	7.8
15:74094235-74094436	site	oligos_6nt_test_vs_ctrl_m1	D	73	82	CTATGGAGCT	7.5
15:77079096-77079297	site	oligos_6nt_test_vs_ctrl_m1	D	-90	-81	ACATGGAGAG	8.1
15:93234384-93234585	site	oligos_6nt_test_vs_ctrl_m1	R	-20	-11	ACATGGAGCG	8.7
15:99034084-99034285	site	oligos_6nt_test_vs_ctrl_m1	R	-82	-73	GGATGGAGAT	7.9
15:102409493-102409694	site	oligos_6nt_test_vs_ctrl_m1	R	20	29	GCATGGAGGA	7.6
16:8830409-8830610	site	oligos_6nt_test_vs_ctrl_m1	D	-52	-43	GGATGGAGGA	7.7
16:11393358-11393559	site	oligos_6nt_test_vs_ctrl_m1	D	-81	-72	TGATGGAGAT	7.8
16:20661561-20661762	site	oligos_6nt_test_vs_ctrl_m1	R	38	47	AGATGGAGTT	7.7
16:23016902-23017103	site	oligos_6nt_test_vs_ctrl_m1	R	57	66	AGATGGAGTA	8.4
16:30065512-30065713	site	oligos_6nt_test_vs_ctrl_m1	D	-9	0	TAATGGAGAA	7.9
16:32631588-32631789	site	oligos_6nt_test_vs_ctrl_m1	R	-9	0	ATATGGAGAT	8.7
16:38108699-38108900	site	oligos_6nt_test_vs_ctrl_m1	R	-47	-38	AGATGGAGCT	7.5
16:48218849-48219050	site	oligos_6nt_test_vs_ctrl_m1	D	-1	8	TTATGGAGTC	7.6
16:50665995-50666196	site	oligos_6nt_test_vs_ctrl_m1	R	47	56	TCATGGAGGA	7.7
16:53985218-53985419	site	oligos_6nt_test_vs_ctrl_m1	D	-10	-1	TTATGGAGCA	7.7
16:53985218-53985419	site	oligos_6nt_test_vs_ctrl_m1	R	7	16	TGATGGAGAT	7.8
16:85644707-85644908	site	oligos_6nt_test_vs_ctrl_m1	R	-64	-55	CGATGGAGTG	8.2
17:3044566-3044767	site	oligos_6nt_test_vs_ctrl_m1	R	-26	-17	TCATGGAGAC	7.7
17:3044566-3044767	site	oligos_6nt_test_vs_ctrl_m1	D	42	51	AGATGGAGGC	7.6
17:4880952-4881153	site	oligos_6nt_test_vs_ctrl_m1	D	-8	1	CCATGGAGCG	8.1
17:20661619-20661820	site	oligos_6nt_test_vs_ctrl_m1	D	-19	-10	TAATGGAGAC	7.8
17:20661619-20661820	site	oligos_6nt_test_vs_ctrl_m1	D	44	53	ACATGGAGCT	7.7
17:33650112-33650313	site	oligos_6nt_test_vs_ctrl_m1	R	-74	-65	CCATGGAGCG	8.1
17:35244257-35244458	site	oligos_6nt_test_vs_ctrl_m1	R	-35	-26	ACATGGAGCC	7.5
17:35244257-35244458	site	oligos_6nt_test_vs_ctrl_m1	R	76	85	AAATGGAGAC	7.6
17:45568911-45569112	site	oligos_6nt_test_vs_ctrl_m1	R	-87	-78	AAATGGAGGA	7.6
17:78491587-78491788	site	oligos_6nt_test_vs_ctrl_m1	D	42	51	AAATGGAGAT	7.7
17:79934084-79934285	site	oligos_6nt_test_vs_ctrl_m1	R	79	88	AGATGGAGAT	8.2
17:90616092-90616293	site	oligos_6nt_test_vs_ctrl_m1	D	-68	-59	AGATGGAGAA	8.1
18:6490582-6490783	site	oligos_6nt_test_vs_ctrl_m1	D	-13	-4	TCATGGAGAA	7.8
18:6760438-6760639	site	oligos_6nt_test_vs_ctrl_m1	D	-100	-91	AAATGGAGAT	7.7
18:15989114-15989315	site	oligos_6nt_test_vs_ctrl_m1	D	-77	-68	GTATGGAGCG	8.9
18:34803502-34803703	site	oligos_6nt_test_vs_ctrl_m1	D	8	17	TGATGGAGGT	7.6
18:35859045-35859246	site	oligos_6nt_test_vs_ctrl_m1	D	-39	-30	ACATGGAGGC	7.7
18:36287712-36287913	site	oligos_6nt_test_vs_ctrl_m1	D	-31	-22	CTATGGAGTG	7.6
18:38360121-38360322	site	oligos_6nt_test_vs_ctrl_m1	D	75	84	GGATGGAGAT	7.9
18:38714421-38714622	site	oligos_6nt_test_vs_ctrl_m1	D	39	48	AGATGGAGGG	7.8
18:46506114-46506315	site	oligos_6nt_test_vs_ctrl_m1	R	90	99	AGATGGAGAA	8.1
18:47112302-47112503	site	oligos_6nt_test_vs_ctrl_m1	D	0	9	ATATGGAGGC	8.2
18:64288561-64288762	site	oligos_6nt_test_vs_ctrl_m1	D	-93	-84	CCATGGAGAA	7.6
18:64288561-64288762	site	oligos_6nt_test_vs_ctrl_m1	R	56	65	TGATGGAGAA	7.7
18:67205805-67206006	site	oligos_6nt_test_vs_ctrl_m1	D	88	97	ACATGGAGCT	7.7
18:82339543-82339744	site	oligos_6nt_test_vs_ctrl_m1	D	51	60	GCATGGAGGA	7.6
18:87474103-87474304	site	oligos_6nt_test_vs_ctrl_m1	R	48	57	CCATGGAGCG	8.1
19:4787798-4787999	site	oligos_6nt_test_vs_ctrl_m1	R	-32	-23	ATATGGAGCA	8.3
19:5493561-5493762	site	oligos_6nt_test_vs_ctrl_m1	R	5	14	GGATGGAGGG	7.5
19:6374059-6374260	site	oligos_6nt_test_vs_ctrl_m1	D	-73	-64	GCATGGAGGT	7.6
19:6376346-6376547	site	oligos_6nt_test_vs_ctrl_m1	R	10	19	ATATGGAGCC	8.0
19:9002719-9002920	site	oligos_6nt_test_vs_ctrl_m1	R	49	58	GCATGGAGAT	7.8
19:9008854-9009055	site	oligos_6nt_test_vs_ctrl_m1	R	91	100	GCATGGAGAT	7.8
19:11121759-11121960	site	oligos_6nt_test_vs_ctrl_m1	D	77	86	GTATGGAGGA	8.3
19:28033621-28033822	site	oligos_6nt_test_vs_ctrl_m1	D	-38	-29	CTATGGAGAG	8.0
19:39054283-39054484	site	oligos_6nt_test_vs_ctrl_m1	R	-39	-30	AAATGGAGCG	8.1
19:40561358-40561559	site	oligos_6nt_test_vs_ctrl_m1	R	54	63	TTATGGAGTT	7.7
19:40621964-40622165	site	oligos_6nt_test_vs_ctrl_m1	D	-66	-57	TTATGGAGTT	7.7
19:40622559-40622760	site	oligos_6nt_test_vs_ctrl_m1	D	-84	-75	GTATGGAGTT	8.0
2:7076199-7076400	site	oligos_6nt_test_vs_ctrl_m1	D	3	12	ACATGGAGCG	8.7
2:19993021-19993222	site	oligos_6nt_test_vs_ctrl_m1	D	-85	-76	GTATGGAGTT	8.0
2:23650662-23650863	site	oligos_6nt_test_vs_ctrl_m1	R	-55	-46	CCATGGAGGA	7.5
2:23650662-23650863	site	oligos_6nt_test_vs_ctrl_m1	R	57	66	ATATGGAGGA	8.6
2:24593420-24593621	site	oligos_6nt_test_vs_ctrl_m1	R	-41	-32	ACATGGAGAT	8.3
2:30472797-30472998	site	oligos_6nt_test_vs_ctrl_m1	D	30	39	AGATGGAGAT	8.2
2:36389246-36389447	site	oligos_6nt_test_vs_ctrl_m1	D	14	23	AAATGGAGGA	7.6
2:36389646-36389847	site	oligos_6nt_test_vs_ctrl_m1	D	-81	-72	AGATGGAGAT	8.2
2:36389646-36389847	site	oligos_6nt_test_vs_ctrl_m1	R	-33	-24	TAATGGAGAA	7.9
2:51871179-51871380	site	oligos_6nt_test_vs_ctrl_m1	R	-92	-83	CCATGGAGCG	8.1
2:57112086-57112287	site	oligos_6nt_test_vs_ctrl_m1	D	-18	-9	TAATGGAGGA	7.8
2:72938019-72938220	site	oligos_6nt_test_vs_ctrl_m1	R	-53	-44	CAATGGAGTA	7.5
2:91773049-91773250	site	oligos_6nt_test_vs_ctrl_m1	D	-32	-23	AGATGGAGGG	7.8
2:116527923-116528124	site	oligos_6nt_test_vs_ctrl_m1	R	-18	-9	TTATGGAGAC	8.1
2:127238440-127238641	site	oligos_6nt_test_vs_ctrl_m1	D	-19	-10	TCATGGAGAT	7.8
2:127238440-127238641	site	oligos_6nt_test_vs_ctrl_m1	D	-13	-4	AGATGGAGGA	8.0
2:129208236-129208437	site	oligos_6nt_test_vs_ctrl_m1	D	-74	-65	AAATGGAGAC	7.6
2:131936894-131937095	site	oligos_6nt_test_vs_ctrl_m1	D	45	54	TGATGGAGCG	8.2
2:140073108-140073309	site	oligos_6nt_test_vs_ctrl_m1	R	18	27	CTATGGAGGA	8.0
2:143989994-143990195	site	oligos_6nt_test_vs_ctrl_m1	D	51	60	TCATGGAGAA	7.8
2:152829430-152829631	site	oligos_6nt_test_vs_ctrl_m1	R	55	64	GGATGGAGTA	8.1
2:153187220-153187421	site	oligos_6nt_test_vs_ctrl_m1	R	-84	-75	AGATGGAGCT	7.5
2:153317439-153317640	site	oligos_6nt_test_vs_ctrl_m1	D	86	95	AGATGGAGGA	8.0
2:156790073-156790274	site	oligos_6nt_test_vs_ctrl_m1	R	81	90	ACATGGAGCT	7.7
2:157557994-157558195	site	oligos_6nt_test_vs_ctrl_m1	D	-23	-14	ACATGGAGTG	7.8
2:162908080-162908281	site	oligos_6nt_test_vs_ctrl_m1	D	-36	-27	CTATGGAGGA	8.0
2:162908080-162908281	site	oligos_6nt_test_vs_ctrl_m1	D	13	22	AGATGGAGCA	7.7
3:8882271-8882472	site	oligos_6nt_test_vs_ctrl_m1	R	-35	-26	GGATGGAGAT	7.9
3:21049949-21050150	site	oligos_6nt_test_vs_ctrl_m1	D	-90	-81	AGATGGAGTC	7.6
3:34069069-34069270	site	oligos_6nt_test_vs_ctrl_m1	R	28	37	AAATGGAGGA	7.6
3:35895396-35895597	site	oligos_6nt_test_vs_ctrl_m1	D	-41	-32	GAATGGAGTA	7.8
3:37599597-37599798	site	oligos_6nt_test_vs_ctrl_m1	R	51	60	TGATGGAGGA	7.6
3:58548716-58548917	site	oligos_6nt_test_vs_ctrl_m1	D	-24	-15	AAATGGAGAA	7.7
3:60529080-60529281	site	oligos_6nt_test_vs_ctrl_m1	R	-87	-78	CGATGGAGTT	8.3
3:60628787-60628988	site	oligos_6nt_test_vs_ctrl_m1	R	42	51	GTATGGAGTG	8.0
3:65947862-65948063	site	oligos_6nt_test_vs_ctrl_m1	D	-2	7	TAATGGAGAC	7.8
3:65950076-65950277	site	oligos_6nt_test_vs_ctrl_m1	R	91	100	TGATGGAGAA	7.7
3:65951447-65951648	site	oligos_6nt_test_vs_ctrl_m1	R	69	78	AAATGGAGAT	7.7
3:69567022-69567223	site	oligos_6nt_test_vs_ctrl_m1	R	-1	8	CCATGGAGAA	7.6
3:76042639-76042840	site	oligos_6nt_test_vs_ctrl_m1	R	87	96	AAATGGAGGT	7.6
3:87207786-87207987	site	oligos_6nt_test_vs_ctrl_m1	D	-19	-10	ATATGGAGGG	8.4
3:88502916-88503117	site	oligos_6nt_test_vs_ctrl_m1	R	79	88	CCATGGAGAC	7.5
3:90213162-90213363	site	oligos_6nt_test_vs_ctrl_m1	D	72	81	TAATGGAGGA	7.8
3:90341773-90341974	site	oligos_6nt_test_vs_ctrl_m1	D	37	46	TCATGGAGAC	7.7
3:90487410-90487611	site	oligos_6nt_test_vs_ctrl_m1	D	89	98	GCATGGAGAC	7.6
3:92228084-92228285	site	oligos_6nt_test_vs_ctrl_m1	R	-57	-48	TGATGGAGAT	7.8
3:92262892-92263093	site	oligos_6nt_test_vs_ctrl_m1	R	-63	-54	TGATGGAGAT	7.8
3:93235191-93235392	site	oligos_6nt_test_vs_ctrl_m1	R	35	44	TCATGGAGAT	7.8
3:95895458-95895659	site	oligos_6nt_test_vs_ctrl_m1	D	-23	-14	CCATGGAGAC	7.5
3:95896664-95896865	site	oligos_6nt_test_vs_ctrl_m1	R	51	60	AGATGGAGAA	8.1
3:124385707-124385908	site	oligos_6nt_test_vs_ctrl_m1	D	79	88	GGATGGAGAT	7.9
3:144625607-144625808	site	oligos_6nt_test_vs_ctrl_m1	D	-35	-26	TGATGGAGAA	7.7
3:152186623-152186824	site	oligos_6nt_test_vs_ctrl_m1	R	81	90	AGATGGAGAT	8.2
3:154132429-154132630	site	oligos_6nt_test_vs_ctrl_m1	R	-61	-52	ATATGGAGGG	8.4
4:12232809-12233010	site	oligos_6nt_test_vs_ctrl_m1	D	-79	-70	AAATGGAGGT	7.6
4:29603907-29604108	site	oligos_6nt_test_vs_ctrl_m1	D	49	58	TAATGGAGAT	8.0
4:40732784-40732985	site	oligos_6nt_test_vs_ctrl_m1	D	-5	4	TAATGGAGAA	7.9
4:43519359-43519560	site	oligos_6nt_test_vs_ctrl_m1	R	-7	2	AGATGGAGCT	7.5
4:58486622-58486823	site	oligos_6nt_test_vs_ctrl_m1	D	77	86	GTATGGAGCT	7.9
4:72851762-72851963	site	oligos_6nt_test_vs_ctrl_m1	R	42	51	TCATGGAGAA	7.8
4:75131266-75131467	site	oligos_6nt_test_vs_ctrl_m1	R	-86	-77	ACATGGAGCT	7.7
4:106136481-106136682	site	oligos_6nt_test_vs_ctrl_m1	R	0	9	AGATGGAGTA	8.4
4:112955080-112955281	site	oligos_6nt_test_vs_ctrl_m1	R	-45	-36	CCATGGAGGA	7.5
4:117728761-117728962	site	oligos_6nt_test_vs_ctrl_m1	R	-63	-54	AGATGGAGTG	7.7
4:117728761-117728962	site	oligos_6nt_test_vs_ctrl_m1	R	-38	-29	ACATGGAGTG	7.8
4:122859954-122860155	site	oligos_6nt_test_vs_ctrl_m1	R	19	28	GTATGGAGAC	8.3
4:123350733-123350934	site	oligos_6nt_test_vs_ctrl_m1	D	5	14	GTATGGAGCA	8.0
4:129002208-129002409	site	oligos_6nt_test_vs_ctrl_m1	D	75	84	TCATGGAGAA	7.8
4:129083765-129083966	site	oligos_6nt_test_vs_ctrl_m1	R	-52	-43	ACATGGAGCG	8.7
4:130730320-130730521	site	oligos_6nt_test_vs_ctrl_m1	D	-15	-6	ACATGGAGTC	7.7
4:138311782-138311983	site	oligos_6nt_test_vs_ctrl_m1	R	26	35	TCATGGAGAA	7.8
4:146101931-146102132	site	oligos_6nt_test_vs_ctrl_m1	R	60	69	AAATGGAGGA	7.6
4:147738067-147738268	site	oligos_6nt_test_vs_ctrl_m1	D	-50	-41	TGATGGAGAA	7.7
5:3691844-3692045	site	oligos_6nt_test_vs_ctrl_m1	R	73	82	CCATGGAGAC	7.5
5:9260891-9261092	site	oligos_6nt_test_vs_ctrl_m1	R	83	92	ACATGGAGAG	8.1
5:24256794-24256995	site	oligos_6nt_test_vs_ctrl_m1	D	84	93	AAATGGAGGA	7.6
5:24803354-24803555	site	oligos_6nt_test_vs_ctrl_m1	D	17	26	AAATGGAGGT	7.6
5:30906550-30906751	site	oligos_6nt_test_vs_ctrl_m1	R	-38	-29	CTATGGAGCA	7.7
5:30906550-30906751	site	oligos_6nt_test_vs_ctrl_m1	R	82	91	AGATGGAGGG	7.8
5:32480694-32480895	site	oligos_6nt_test_vs_ctrl_m1	D	-62	-53	ATATGGAGGT	8.6
5:36615258-36615459	site	oligos_6nt_test_vs_ctrl_m1	R	6	15	GTATGGAGTT	8.0
5:45734110-45734311	site	oligos_6nt_test_vs_ctrl_m1	D	-100	-91	TGATGGAGGT	7.6
5:46414420-46414621	site	oligos_6nt_test_vs_ctrl_m1	D	35	44	AAATGGAGAT	7.7
5:72626952-72627153	site	oligos_6nt_test_vs_ctrl_m1	R	-57	-48	AGATGGAGAT	8.2
5:72914534-72914735	site	oligos_6nt_test_vs_ctrl_m1	D	-12	-3	GCATGGAGGA	7.6
5:88838541-88838742	site	oligos_6nt_test_vs_ctrl_m1	R	-52	-43	GCATGGAGGT	7.6
5:88838541-88838742	site	oligos_6nt_test_vs_ctrl_m1	R	2	11	ACATGGAGCT	7.7
5:91806539-91806740	site	oligos_6nt_test_vs_ctrl_m1	R	0	9	CCATGGAGCG	8.1
5:93187620-93187821	site	oligos_6nt_test_vs_ctrl_m1	R	-81	-72	AAATGGAGAA	7.7
5:122172769-122172970	site	oligos_6nt_test_vs_ctrl_m1	R	42	51	TTATGGAGAA	8.2
5:140760788-140760989	site	oligos_6nt_test_vs_ctrl_m1	D	-68	-59	TGATGGAGAC	7.6
5:140760788-140760989	site	oligos_6nt_test_vs_ctrl_m1	R	15	24	TCATGGAGGA	7.7
5:142905298-142905499	site	oligos_6nt_test_vs_ctrl_m1	R	-50	-41	ACATGGAGAA	8.2
5:146261012-146261213	site	oligos_6nt_test_vs_ctrl_m1	R	42	51	AGATGGAGTT	7.7
5:146575840-146576041	site	oligos_6nt_test_vs_ctrl_m1	D	-38	-29	CGATGGAGAC	8.6
5:146575840-146576041	site	oligos_6nt_test_vs_ctrl_m1	D	73	82	GCATGGAGGT	7.6
6:26933359-26933560	site	oligos_6nt_test_vs_ctrl_m1	R	3	12	ATATGGAGAA	8.7
6:35509200-35509401	site	oligos_6nt_test_vs_ctrl_m1	R	-59	-50	GTATGGAGGA	8.3
6:35509200-35509401	site	oligos_6nt_test_vs_ctrl_m1	R	-33	-24	AAATGGAGAA	7.7
6:37686746-37686947	site	oligos_6nt_test_vs_ctrl_m1	R	31	40	CGATGGAGAG	8.6
6:46529892-46530093	site	oligos_6nt_test_vs_ctrl_m1	D	-78	-69	ACATGGAGTG	7.8
6:47045692-47045893	site	oligos_6nt_test_vs_ctrl_m1	D	-10	-1	AAATGGAGAA	7.7
6:48524866-48525067	site	oligos_6nt_test_vs_ctrl_m1	R	-2	7	TAATGGAGGG	7.6
6:58017742-58017943	site	oligos_6nt_test_vs_ctrl_m1	R	17	26	TGATGGAGAA	7.7
6:75297539-75297740	site	oligos_6nt_test_vs_ctrl_m1	D	53	62	CCATGGAGGA	7.5
6:83601197-83601398	site	oligos_6nt_test_vs_ctrl_m1	R	46	55	CTATGGAGGC	7.6
6:84812506-84812707	site	oligos_6nt_test_vs_ctrl_m1	D	-57	-48	CCATGGAGAA	7.6
6:85844241-85844442	site	oligos_6nt_test_vs_ctrl_m1	D	60	69	AGATGGAGCA	7.7
6:87948433-87948634	site	oligos_6nt_test_vs_ctrl_m1	R	8	17	AGATGGAGGC	7.6
6:88578208-88578409	site	oligos_6nt_test_vs_ctrl_m1	D	37	46	TTATGGAGGC	7.7
6:93137662-93137863	site	oligos_6nt_test_vs_ctrl_m1	R	-89	-80	CCATGGAGAA	7.6
6:95141818-95142019	site	oligos_6nt_test_vs_ctrl_m1	R	78	87	ATATGGAGAA	8.7
6:96032919-96033120	site	oligos_6nt_test_vs_ctrl_m1	R	27	36	TGATGGAGAT	7.8
6:99877814-99878015	site	oligos_6nt_test_vs_ctrl_m1	R	-92	-83	AGATGGAGAA	8.1
6:108882223-108882424	site	oligos_6nt_test_vs_ctrl_m1	D	69	78	ACATGGAGAA	8.2
6:113153052-113153253	site	oligos_6nt_test_vs_ctrl_m1	R	-14	-5	AAATGGAGAG	7.5
6:113447378-113447579	site	oligos_6nt_test_vs_ctrl_m1	R	-7	2	TCATGGAGAG	7.6
6:113447378-113447579	site	oligos_6nt_test_vs_ctrl_m1	R	17	26	CGATGGAGAA	8.7
6:113447378-113447579	site	oligos_6nt_test_vs_ctrl_m1	D	45	54	GCATGGAGAT	7.8
6:122644459-122644660	site	oligos_6nt_test_vs_ctrl_m1	D	-59	-50	CCATGGAGAA	7.6
6:122698827-122699028	site	oligos_6nt_test_vs_ctrl_m1	R	64	73	CTATGGAGGA	8.0
6:124811331-124811532	site	oligos_6nt_test_vs_ctrl_m1	R	83	92	TTATGGAGGT	8.0
6:126879595-126879796	site	oligos_6nt_test_vs_ctrl_m1	R	30	39	ACATGGAGTG	7.8
7:5128988-5129189	site	oligos_6nt_test_vs_ctrl_m1	R	45	54	ACATGGAGAA	8.2
7:11845439-11845640	site	oligos_6nt_test_vs_ctrl_m1	D	22	31	GGATGGAGAG	7.7
7:16499029-16499230	site	oligos_6nt_test_vs_ctrl_m1	D	40	49	TGATGGAGAA	7.7
7:16917046-16917247	site	oligos_6nt_test_vs_ctrl_m1	R	-53	-44	TGATGGAGAT	7.8
7:23357598-23357799	site	oligos_6nt_test_vs_ctrl_m1	D	6	15	AGATGGAGAA	8.1
7:39589112-39589313	site	oligos_6nt_test_vs_ctrl_m1	R	-91	-82	AGATGGAGAC	8.0
7:39589610-39589811	site	oligos_6nt_test_vs_ctrl_m1	D	-7	2	ACATGGAGTT	7.8
7:42020738-42020939	site	oligos_6nt_test_vs_ctrl_m1	R	-88	-79	CTATGGAGCT	7.5
7:59276223-59276424	site	oligos_6nt_test_vs_ctrl_m1	D	-58	-49	TAATGGAGAA	7.9
7:73541424-73541625	site	oligos_6nt_test_vs_ctrl_m1	D	-64	-55	AAATGGAGGT	7.6
7:79790241-79790442	site	oligos_6nt_test_vs_ctrl_m1	R	38	47	ATATGGAGAA	8.7
7:97595219-97595420	site	oligos_6nt_test_vs_ctrl_m1	R	85	94	CTATGGAGGA	8.0
7:100264911-100265112	site	oligos_6nt_test_vs_ctrl_m1	D	82	91	ATATGGAGTC	8.2
7:104748147-104748348	site	oligos_6nt_test_vs_ctrl_m1	R	62	71	GCATGGAGGA	7.6
7:119740647-119740848	site	oligos_6nt_test_vs_ctrl_m1	D	-76	-67	CTATGGAGCA	7.7
7:119740647-119740848	site	oligos_6nt_test_vs_ctrl_m1	R	83	92	TTATGGAGAA	8.2
7:123170342-123170543	site	oligos_6nt_test_vs_ctrl_m1	D	24	33	TAATGGAGAG	7.8
7:126492092-126492293	site	oligos_6nt_test_vs_ctrl_m1	D	-61	-52	TCATGGAGGT	7.6
7:132998815-132999016	site	oligos_6nt_test_vs_ctrl_m1	D	76	85	CCATGGAGAT	7.7
8:3995673-3995874	site	oligos_6nt_test_vs_ctrl_m1	R	-71	-62	ATATGGAGAT	8.7
8:4040161-4040362	site	oligos_6nt_test_vs_ctrl_m1	D	-96	-87	GGATGGAGAG	7.7
8:4088349-4088550	site	oligos_6nt_test_vs_ctrl_m1	D	-17	-8	TCATGGAGAT	7.8
8:33615460-33615661	site	oligos_6nt_test_vs_ctrl_m1	R	-88	-79	GGATGGAGAC	7.7
8:46229099-46229300	site	oligos_6nt_test_vs_ctrl_m1	D	34	43	ACATGGAGAA	8.2
8:61121319-61121520	site	oligos_6nt_test_vs_ctrl_m1	R	-28	-19	GAATGGAGAT	7.5
8:72304838-72305039	site	oligos_6nt_test_vs_ctrl_m1	R	21	30	AAATGGAGAT	7.7
8:78505746-78505947	site	oligos_6nt_test_vs_ctrl_m1	R	-43	-34	TTATGGAGGA	8.1
8:80111162-80111363	site	oligos_6nt_test_vs_ctrl_m1	R	-3	6	ATATGGAGAG	8.6
8:92360510-92360711	site	oligos_6nt_test_vs_ctrl_m1	R	-99	-90	GCATGGAGAG	7.6
8:100031214-100031415	site	oligos_6nt_test_vs_ctrl_m1	R	77	86	AGATGGAGTT	7.7
8:107339009-107339210	site	oligos_6nt_test_vs_ctrl_m1	D	23	32	GGATGGAGGA	7.7
8:122683641-122683842	site	oligos_6nt_test_vs_ctrl_m1	R	-18	-9	TTATGGAGCA	7.7
8:123421397-123421598	site	oligos_6nt_test_vs_ctrl_m1	D	45	54	AGATGGAGTT	7.7
8:123893251-123893452	site	oligos_6nt_test_vs_ctrl_m1	R	-9	0	ACATGGAGAA	8.2
8:125995539-125995740	site	oligos_6nt_test_vs_ctrl_m1	D	80	89	TTATGGAGTG	7.7
9:47466142-47466343	site	oligos_6nt_test_vs_ctrl_m1	D	-73	-64	AGATGGAGCA	7.7
9:71844372-71844573	site	oligos_6nt_test_vs_ctrl_m1	R	28	37	CTATGGAGTA	8.4
9:78175375-78175576	site	oligos_6nt_test_vs_ctrl_m1	D	46	55	ACATGGAGCG	8.7
9:78820865-78821066	site	oligos_6nt_test_vs_ctrl_m1	R	-89	-80	ATATGGAGAA	8.7
9:84973923-84974124	site	oligos_6nt_test_vs_ctrl_m1	R	-28	-19	GCATGGAGAC	7.6
9:91098357-91098558	site	oligos_6nt_test_vs_ctrl_m1	D	-79	-70	GCATGGAGGA	7.6
9:98577277-98577478	site	oligos_6nt_test_vs_ctrl_m1	D	63	72	AGATGGAGAA	8.1
9:100497751-100497952	site	oligos_6nt_test_vs_ctrl_m1	R	-68	-59	TCATGGAGAA	7.8
9:107616175-107616376	site	oligos_6nt_test_vs_ctrl_m1	D	-40	-31	TGATGGAGGT	7.6
9:113958757-113958958	site	oligos_6nt_test_vs_ctrl_m1	D	11	20	AGATGGAGAA	8.1
9:118837629-118837830	site	oligos_6nt_test_vs_ctrl_m1	R	-18	-9	ATATGGAGAA	8.7
9:120957442-120957643	site	oligos_6nt_test_vs_ctrl_m1	R	-36	-27	CTATGGAGAA	8.1
X:13156341-13156542	site	oligos_6nt_test_vs_ctrl_m1	D	-77	-68	TGATGGAGAT	7.8
X:13169423-13169624	site	oligos_6nt_test_vs_ctrl_m1	D	68	77	ACATGGAGTG	7.8
X:13179532-13179733	site	oligos_6nt_test_vs_ctrl_m1	D	55	64	ACATGGAGTG	7.8
X:13189605-13189806	site	oligos_6nt_test_vs_ctrl_m1	D	77	86	ACATGGAGTG	7.8
X:13203599-13203800	site	oligos_6nt_test_vs_ctrl_m1	D	13	22	CCATGGAGGA	7.5
X:18254359-18254560	site	oligos_6nt_test_vs_ctrl_m1	D	-91	-82	CCATGGAGAT	7.7
X:33581522-33581723	site	oligos_6nt_test_vs_ctrl_m1	D	86	95	TGATGGAGCG	8.2
X:38193419-38193620	site	oligos_6nt_test_vs_ctrl_m1	D	-84	-75	TAATGGAGGG	7.6
X:38631489-38631690	site	oligos_6nt_test_vs_ctrl_m1	R	-24	-15	GGATGGAGGA	7.7
X:51004277-51004478	site	oligos_6nt_test_vs_ctrl_m1	R	-95	-86	TTATGGAGGC	7.7
X:62775911-62776112	site	oligos_6nt_test_vs_ctrl_m1	R	65	74	CGATGGAGGC	8.2
X:74171692-74171893	site	oligos_6nt_test_vs_ctrl_m1	D	3	12	CCATGGAGGA	7.5
X:74225060-74225261	site	oligos_6nt_test_vs_ctrl_m1	D	-67	-58	TGATGGAGAT	7.8
X:74261135-74261336	site	oligos_6nt_test_vs_ctrl_m1	D	33	42	ATATGGAGAA	8.7
X:75987173-75987374	site	oligos_6nt_test_vs_ctrl_m1	D	-22	-13	TGATGGAGAA	7.7
X:81822322-81822523	site	oligos_6nt_test_vs_ctrl_m1	R	24	33	TTATGGAGCA	7.7
X:94078745-94078946	site	oligos_6nt_test_vs_ctrl_m1	D	60	69	GAATGGAGAT	7.5
X:101768947-101769148	site	oligos_6nt_test_vs_ctrl_m1	D	-7	2	AGATGGAGAA	8.1
X:126750631-126750832	site	oligos_6nt_test_vs_ctrl_m1	D	-76	-67	AAATGGAGGA	7.6
X:133094454-133094655	site	oligos_6nt_test_vs_ctrl_m1	D	-84	-75	GTATGGAGGC	7.9
X:136271361-136271562	site	oligos_6nt_test_vs_ctrl_m1	D	53	62	AGATGGAGAT	8.2
X:136271361-136271562	site	oligos_6nt_test_vs_ctrl_m1	D	76	85	TCATGGAGGA	7.7
X:139968299-139968500	site	oligos_6nt_test_vs_ctrl_m1	D	-35	-26	ACATGGAGCC	7.5
X:141980390-141980591	site	oligos_6nt_test_vs_ctrl_m1	R	36	45	TCATGGAGAT	7.8
X:142211516-142211717	site	oligos_6nt_test_vs_ctrl_m1	D	34	43	TCATGGAGGA	7.7
X:151907233-151907434	site	oligos_6nt_test_vs_ctrl_m1	R	-84	-75	AGATGGAGAA	8.1
X:152027775-152027976	site	oligos_6nt_test_vs_ctrl_m1	D	21	30	GGATGGAGGA	7.7
;
; Matrices
;	matrix	name                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_test_vs_ctrl_m1	10	4	0	-32.100	8.800	40.900	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                      	matches	scored
;	1	oligos_6nt_test_vs_ctrl_m1	352	0
;		TOTAL          	352	0
; Host name	rsat
; Job started	2025-09-18.095847
; Job done	2025-09-18.095848
; Seconds	0.27
;	user	0.27
;	system	0.03
;	cuser	0.1
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:6247971-6248172	site	oligos_7nt_test_vs_ctrl_m1	D	-37	-27	TAGAAACTAAA	8.9
1:46193630-46193831	site	oligos_7nt_test_vs_ctrl_m1	D	-38	-28	TAGAAACTACC	9.1
1:99524210-99524411	site	oligos_7nt_test_vs_ctrl_m1	R	-56	-46	AAGAAACTAGT	8.6
1:119787766-119787967	site	oligos_7nt_test_vs_ctrl_m1	D	67	77	AAGAAACTAGG	7.6
1:155845393-155845594	site	oligos_7nt_test_vs_ctrl_m1	R	-42	-32	TAGAAACTACA	9.5
1:177450518-177450719	site	oligos_7nt_test_vs_ctrl_m1	R	-32	-22	GTGAAACTAAG	7.8
10:39822406-39822607	site	oligos_7nt_test_vs_ctrl_m1	D	-28	-18	GTGAAACTAGG	7.7
10:115431878-115432079	site	oligos_7nt_test_vs_ctrl_m1	R	-33	-23	TGGAAACTAGT	8.2
11:50379468-50379669	site	oligos_7nt_test_vs_ctrl_m1	D	25	35	GAGAAACTATG	8.5
11:65688532-65688733	site	oligos_7nt_test_vs_ctrl_m1	R	76	86	TATAAACTATA	8.1
11:75070956-75071157	site	oligos_7nt_test_vs_ctrl_m1	R	-100	-90	AAGAAACTAGG	7.6
11:84832690-84832891	site	oligos_7nt_test_vs_ctrl_m1	D	23	33	ACGAAACTAAA	9.0
12:34385176-34385377	site	oligos_7nt_test_vs_ctrl_m1	D	71	81	GTTAAACTATA	7.5
12:40036117-40036318	site	oligos_7nt_test_vs_ctrl_m1	R	-19	-9	GAGAAACTACA	9.2
12:51768899-51769100	site	oligos_7nt_test_vs_ctrl_m1	D	33	43	CTGAAACTATA	9.2
12:105838741-105838942	site	oligos_7nt_test_vs_ctrl_m1	R	-75	-65	TGGAAACTAGA	8.0
12:109359254-109359455	site	oligos_7nt_test_vs_ctrl_m1	R	57	67	GAGAAACTAAT	8.8
13:63446963-63447164	site	oligos_7nt_test_vs_ctrl_m1	R	-3	7	ACGAAACTAGA	9.0
13:111718164-111718365	site	oligos_7nt_test_vs_ctrl_m1	D	52	62	GGGAAACTATT	8.9
14:37655439-37655640	site	oligos_7nt_test_vs_ctrl_m1	R	-98	-88	AAGAAACTAAA	8.5
15:71794713-71794914	site	oligos_7nt_test_vs_ctrl_m1	D	17	27	TATAAACTACG	7.7
15:102498532-102498733	site	oligos_7nt_test_vs_ctrl_m1	R	-55	-45	CAGAAACTACA	8.8
15:103244280-103244481	site	oligos_7nt_test_vs_ctrl_m1	R	69	79	CAGAAACTAAA	8.2
16:8843031-8843232	site	oligos_7nt_test_vs_ctrl_m1	D	49	59	CGGAAACTAGC	8.4
16:20656549-20656750	site	oligos_7nt_test_vs_ctrl_m1	R	41	51	ATGAAACTATA	9.7
16:30067583-30067784	site	oligos_7nt_test_vs_ctrl_m1	D	81	91	GAGAAAATATA	7.7
16:38243318-38243519	site	oligos_7nt_test_vs_ctrl_m1	R	47	57	TTAAAACTATA	7.7
17:10206843-10207044	site	oligos_7nt_test_vs_ctrl_m1	D	2	12	ATGAAACTACT	9.1
17:39636739-39636940	site	oligos_7nt_test_vs_ctrl_m1	D	-98	-88	CAGAAACTAAA	8.2
17:74702371-74702572	site	oligos_7nt_test_vs_ctrl_m1	D	-17	-7	AAGAAACTAAT	8.7
17:74702371-74702572	site	oligos_7nt_test_vs_ctrl_m1	D	13	23	CTGAAACTATA	9.2
17:78491587-78491788	site	oligos_7nt_test_vs_ctrl_m1	D	-50	-40	TGGAAACTACT	8.7
18:35860873-35861074	site	oligos_7nt_test_vs_ctrl_m1	D	-7	3	ACGAATCTATA	7.5
18:36610291-36610492	site	oligos_7nt_test_vs_ctrl_m1	D	13	23	TGGAAACTACG	8.9
18:90311815-90312016	site	oligos_7nt_test_vs_ctrl_m1	R	-28	-18	CAGAAACTACA	8.8
19:14561454-14561655	site	oligos_7nt_test_vs_ctrl_m1	D	54	64	GATAAACTATA	7.8
19:24550692-24550893	site	oligos_7nt_test_vs_ctrl_m1	R	-59	-49	GTGAAACTAAA	8.5
19:29809764-29809965	site	oligos_7nt_test_vs_ctrl_m1	R	-91	-81	ATGAAACTATT	9.2
19:39052767-39052968	site	oligos_7nt_test_vs_ctrl_m1	R	-56	-46	AGGAAACTATA	9.4
2:5961449-5961650	site	oligos_7nt_test_vs_ctrl_m1	R	-58	-48	CAGAAACTAAT	8.4
2:23224970-23225171	site	oligos_7nt_test_vs_ctrl_m1	D	48	58	AAGAAACTAGA	8.5
2:37374413-37374614	site	oligos_7nt_test_vs_ctrl_m1	D	11	21	CAGAAACTATT	8.8
2:72936978-72937179	site	oligos_7nt_test_vs_ctrl_m1	R	-29	-19	TAGAAACTAGA	8.9
2:103766550-103766751	site	oligos_7nt_test_vs_ctrl_m1	R	-41	-31	AGGAAACTATT	8.9
2:107309854-107310055	site	oligos_7nt_test_vs_ctrl_m1	R	-64	-54	ATGAAACTATA	9.7
2:122220088-122220289	site	oligos_7nt_test_vs_ctrl_m1	D	50	60	AAGAAACTAGG	7.6
2:155390752-155390953	site	oligos_7nt_test_vs_ctrl_m1	D	67	77	GTGAAACTAAT	8.8
2:156056391-156056592	site	oligos_7nt_test_vs_ctrl_m1	D	35	45	AGGAAACTAAA	8.2
2:156178847-156179048	site	oligos_7nt_test_vs_ctrl_m1	D	46	56	GTGAAACTACT	9.2
3:136935211-136935412	site	oligos_7nt_test_vs_ctrl_m1	D	86	96	AATAAACTATA	7.7
4:74303168-74303369	site	oligos_7nt_test_vs_ctrl_m1	D	9	19	TTGAAACTATT	8.8
4:80534466-80534667	site	oligos_7nt_test_vs_ctrl_m1	D	-62	-52	GTGAAACTATA	9.7
4:135867227-135867428	site	oligos_7nt_test_vs_ctrl_m1	D	64	74	TGGAAACTAAT	8.3
5:45692954-45693155	site	oligos_7nt_test_vs_ctrl_m1	D	56	66	AGGAAACTAGA	8.2
5:92187897-92188098	site	oligos_7nt_test_vs_ctrl_m1	D	-54	-44	GAGAAACTAAA	8.6
5:92187897-92188098	site	oligos_7nt_test_vs_ctrl_m1	D	-3	7	GAGAAACTAGG	7.8
5:109543469-109543670	site	oligos_7nt_test_vs_ctrl_m1	D	-45	-35	TTGAAACTATA	9.4
6:6351040-6351241	site	oligos_7nt_test_vs_ctrl_m1	D	-56	-46	CAGAAACTAAA	8.2
6:31475433-31475634	site	oligos_7nt_test_vs_ctrl_m1	R	-40	-30	TATAAACTATA	8.1
6:31475433-31475634	site	oligos_7nt_test_vs_ctrl_m1	R	-33	-23	TATAAACTATA	8.1
6:71683735-71683936	site	oligos_7nt_test_vs_ctrl_m1	D	-92	-82	AAGAAACTACT	9.1
6:134541666-134541867	site	oligos_7nt_test_vs_ctrl_m1	R	-17	-7	CTGAAACTAAT	8.2
6:134924326-134924527	site	oligos_7nt_test_vs_ctrl_m1	R	60	70	TAAAAACTATA	7.8
7:7062290-7062491	site	oligos_7nt_test_vs_ctrl_m1	R	-20	-10	ATAAAACTATA	8.0
7:10656593-10656794	site	oligos_7nt_test_vs_ctrl_m1	R	-52	-42	AAGAAACTAGT	8.6
7:61070404-61070605	site	oligos_7nt_test_vs_ctrl_m1	D	-77	-67	GTGAAACTAAA	8.5
7:89509699-89509900	site	oligos_7nt_test_vs_ctrl_m1	R	-69	-59	AGGAAACTACC	8.5
8:111309947-111310148	site	oligos_7nt_test_vs_ctrl_m1	R	44	54	CGGACACTATA	7.6
8:112013923-112014124	site	oligos_7nt_test_vs_ctrl_m1	R	78	88	TGGAAACTATA	9.3
8:122841790-122841991	site	oligos_7nt_test_vs_ctrl_m1	D	8	18	AAGAAACTAGT	8.6
9:31053329-31053530	site	oligos_7nt_test_vs_ctrl_m1	D	-80	-70	GGGAAACTAAA	8.2
9:83409687-83409888	site	oligos_7nt_test_vs_ctrl_m1	D	-70	-60	CGGACACTATA	7.6
9:118837629-118837830	site	oligos_7nt_test_vs_ctrl_m1	R	46	56	AAGAAACTAGT	8.6
X:15365322-15365523	site	oligos_7nt_test_vs_ctrl_m1	D	34	44	CAGAAACTACA	8.8
X:74261135-74261336	site	oligos_7nt_test_vs_ctrl_m1	D	-32	-22	AAGAAACTAGT	8.6
X:88971143-88971344	site	oligos_7nt_test_vs_ctrl_m1	D	-55	-45	GGGAAACTACA	8.8
X:106992710-106992911	site	oligos_7nt_test_vs_ctrl_m1	R	88	98	GGGAAACTACA	8.8
;
; Matrices
;	matrix	name                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_test_vs_ctrl_m1	11	4	0	-16.000	9.300	25.300	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                      	matches	scored
;	1	oligos_7nt_test_vs_ctrl_m1	77	0
;		TOTAL          	77	0
; Host name	rsat
; Job started	2025-09-18.095849
; Job done	2025-09-18.095849
; Seconds	0.27
;	user	0.27
;	system	0
;	cuser	0.1
;	csystem	0.02
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:110177455-110177656	site	oligos_7nt_test_vs_ctrl_m2	R	-80	-70	GCCTCACAAGC	7.6
1:177450518-177450719	site	oligos_7nt_test_vs_ctrl_m2	R	-59	-49	CACTCACAATG	8.1
1:178328353-178328554	site	oligos_7nt_test_vs_ctrl_m2	D	-15	-5	GACTCACAATT	8.5
1:178332080-178332281	site	oligos_7nt_test_vs_ctrl_m2	D	-90	-80	ACCTCACAATC	8.4
1:191909656-191909857	site	oligos_7nt_test_vs_ctrl_m2	R	-9	1	GACTCACAAAG	8.0
10:49592968-49593169	site	oligos_7nt_test_vs_ctrl_m2	D	-92	-82	GTCTCACAAGA	8.2
10:69019628-69019829	site	oligos_7nt_test_vs_ctrl_m2	D	-92	-82	GGCTCACAACC	8.1
10:99758732-99758933	site	oligos_7nt_test_vs_ctrl_m2	R	-50	-40	CTCTCACAAGA	7.9
10:126324975-126325176	site	oligos_7nt_test_vs_ctrl_m2	R	-92	-82	AGCTCACAAGA	7.6
11:6467663-6467864	site	oligos_7nt_test_vs_ctrl_m2	D	83	93	GTCTCACAATT	8.4
11:23296693-23296894	site	oligos_7nt_test_vs_ctrl_m2	R	4	14	GGCTCACAAAT	7.7
11:30100091-30100292	site	oligos_7nt_test_vs_ctrl_m2	D	2	12	GCCTCACAAAA	7.9
11:65688532-65688733	site	oligos_7nt_test_vs_ctrl_m2	D	-28	-18	AGCTCACAATG	7.6
11:75724927-75725128	site	oligos_7nt_test_vs_ctrl_m2	D	55	65	GGCTCACAACC	8.1
11:80394288-80394489	site	oligos_7nt_test_vs_ctrl_m2	D	84	94	CACTCACAACC	8.5
11:86711426-86711627	site	oligos_7nt_test_vs_ctrl_m2	R	-22	-12	TACTCACAATG	8.7
11:94292298-94292499	site	oligos_7nt_test_vs_ctrl_m2	D	57	67	CGCTCACAACA	9.0
11:101321863-101322064	site	oligos_7nt_test_vs_ctrl_m2	R	-69	-59	GACTCACAAAG	8.0
11:107917321-107917522	site	oligos_7nt_test_vs_ctrl_m2	D	22	32	GGCTCACAACC	8.1
13:23747003-23747204	site	oligos_7nt_test_vs_ctrl_m2	D	80	90	GGCTCACAACA	8.1
13:70006887-70007088	site	oligos_7nt_test_vs_ctrl_m2	D	85	95	CACTCACAATC	8.7
13:104430996-104431197	site	oligos_7nt_test_vs_ctrl_m2	R	-50	-40	TGCTCACAATG	7.6
13:119775964-119776165	site	oligos_7nt_test_vs_ctrl_m2	D	-38	-28	TTCTCACAATG	7.9
14:52097293-52097494	site	oligos_7nt_test_vs_ctrl_m2	R	32	42	CCCTCACAAAC	8.0
14:66967885-66968086	site	oligos_7nt_test_vs_ctrl_m2	R	65	75	GACTCACAAAG	8.0
14:74223619-74223820	site	oligos_7nt_test_vs_ctrl_m2	D	76	86	ATCTCACAACT	8.2
15:48617935-48618136	site	oligos_7nt_test_vs_ctrl_m2	R	12	22	AACTCACAATC	8.7
15:73407648-73407849	site	oligos_7nt_test_vs_ctrl_m2	R	-58	-48	TCCTCACAATA	8.9
15:74081163-74081364	site	oligos_7nt_test_vs_ctrl_m2	R	-32	-22	AGCTCACAACA	8.0
15:93412881-93413082	site	oligos_7nt_test_vs_ctrl_m2	R	-22	-12	GACTCACAAGG	7.7
15:100619461-100619662	site	oligos_7nt_test_vs_ctrl_m2	D	-15	-5	TTCTCACAATG	7.9
16:20654882-20655083	site	oligos_7nt_test_vs_ctrl_m2	D	-57	-47	GGCTCACAATG	7.7
16:23113303-23113504	site	oligos_7nt_test_vs_ctrl_m2	R	66	76	TCCTCACAAGA	7.8
17:78491587-78491788	site	oligos_7nt_test_vs_ctrl_m2	D	4	14	GACTCACAATT	8.5
18:42071288-42071489	site	oligos_7nt_test_vs_ctrl_m2	R	87	97	GGCTCACAACC	8.1
18:85848456-85848657	site	oligos_7nt_test_vs_ctrl_m2	R	52	62	GACTCACAATT	8.5
2:9041229-9041430	site	oligos_7nt_test_vs_ctrl_m2	D	38	48	TTCTCACAAAA	8.1
2:24992711-24992912	site	oligos_7nt_test_vs_ctrl_m2	D	78	88	AACTCACAAGG	7.5
2:25223158-25223359	site	oligos_7nt_test_vs_ctrl_m2	D	23	33	TTCTCACAACG	8.8
2:60270160-60270361	site	oligos_7nt_test_vs_ctrl_m2	D	-9	1	AGCTCACAACC	8.0
2:87393719-87393920	site	oligos_7nt_test_vs_ctrl_m2	D	-36	-26	CTCTCACAACA	8.3
2:90905786-90905987	site	oligos_7nt_test_vs_ctrl_m2	D	47	57	GGCTCACAACC	8.1
2:155421148-155421349	site	oligos_7nt_test_vs_ctrl_m2	R	89	99	GCCTCACAAGC	7.6
3:5415285-5415486	site	oligos_7nt_test_vs_ctrl_m2	D	-100	-90	CTCTCACAAAA	8.1
3:9264662-9264863	site	oligos_7nt_test_vs_ctrl_m2	D	88	98	TGCTCACAAGC	7.5
3:152427792-152427993	site	oligos_7nt_test_vs_ctrl_m2	R	-55	-45	TTCTCACAATC	8.5
4:74303168-74303369	site	oligos_7nt_test_vs_ctrl_m2	D	81	91	ACCTCACAAAT	7.9
4:87841073-87841274	site	oligos_7nt_test_vs_ctrl_m2	R	41	51	GCCTCACAAAT	7.8
4:129839492-129839693	site	oligos_7nt_test_vs_ctrl_m2	D	43	53	AACTCACAACC	8.5
4:141522189-141522390	site	oligos_7nt_test_vs_ctrl_m2	R	-7	3	AGCTCACAACT	7.7
5:7179566-7179767	site	oligos_7nt_test_vs_ctrl_m2	R	51	61	TTCTCACAACG	8.8
5:40372512-40372713	site	oligos_7nt_test_vs_ctrl_m2	D	-76	-66	GACTCACAAAA	8.5
5:90132313-90132514	site	oligos_7nt_test_vs_ctrl_m2	D	39	49	GACTCATAATA	7.6
5:108085485-108085686	site	oligos_7nt_test_vs_ctrl_m2	R	70	80	GGCTCACAACC	8.1
6:31475433-31475634	site	oligos_7nt_test_vs_ctrl_m2	D	82	92	GGCTCACAACC	8.1
6:98173003-98173204	site	oligos_7nt_test_vs_ctrl_m2	D	74	84	CCCTCACAATA	8.8
7:4794350-4794551	site	oligos_7nt_test_vs_ctrl_m2	R	-66	-56	AGCTCACAAAC	7.9
7:67268254-67268455	site	oligos_7nt_test_vs_ctrl_m2	D	11	21	CTCTCACAACC	8.3
7:90444189-90444390	site	oligos_7nt_test_vs_ctrl_m2	D	75	85	GCCTCACAACC	8.1
7:100640717-100640918	site	oligos_7nt_test_vs_ctrl_m2	R	-9	1	ATCTCACAATA	9.2
7:123002201-123002402	site	oligos_7nt_test_vs_ctrl_m2	R	19	29	AACTCACAATT	8.3
8:25640813-25641014	site	oligos_7nt_test_vs_ctrl_m2	D	-91	-81	CGCTCACAAAT	8.7
8:27500775-27500976	site	oligos_7nt_test_vs_ctrl_m2	R	-64	-54	TACTCACAACA	9.2
8:80111162-80111363	site	oligos_7nt_test_vs_ctrl_m2	D	-57	-47	ACCTCACAACC	8.2
9:66372298-66372499	site	oligos_7nt_test_vs_ctrl_m2	R	6	16	AGCTCACAACT	7.7
9:71844372-71844573	site	oligos_7nt_test_vs_ctrl_m2	D	19	29	CTCTCACAATA	9.0
9:78820865-78821066	site	oligos_7nt_test_vs_ctrl_m2	R	-59	-49	AGCTCACAATG	7.6
X:13161330-13161531	site	oligos_7nt_test_vs_ctrl_m2	R	-32	-22	TTCTCACAAAT	8.0
X:103961653-103961854	site	oligos_7nt_test_vs_ctrl_m2	D	-72	-62	GGCTCACAAAA	7.9
X:139714265-139714466	site	oligos_7nt_test_vs_ctrl_m2	R	4	14	TCCTCACAAGC	7.6
X:156105357-156105558	site	oligos_7nt_test_vs_ctrl_m2	D	35	45	GTCTCACAAAA	8.4
;
; Matrices
;	matrix	name                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_test_vs_ctrl_m2	11	4	0	-19.100	9.400	28.500	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                      	matches	scored
;	1	oligos_7nt_test_vs_ctrl_m2	71	0
;		TOTAL          	71	0
; Host name	rsat
; Job started	2025-09-18.095850
; Job done	2025-09-18.095850
; Seconds	0.27
;	user	0.27
;	system	0
;	cuser	0.11
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:52187636-52187837	site	oligos_7nt_test_vs_ctrl_m3	D	-74	-64	CAGACTCTCCA	7.7
1:52187636-52187837	site	oligos_7nt_test_vs_ctrl_m3	D	25	35	GAGACTCTCAT	8.6
1:110177455-110177656	site	oligos_7nt_test_vs_ctrl_m3	D	-31	-21	AGGACTCTCCT	8.2
1:171340925-171341126	site	oligos_7nt_test_vs_ctrl_m3	D	54	64	CAGACTCTCTC	8.3
10:8601218-8601419	site	oligos_7nt_test_vs_ctrl_m3	D	7	17	GGGACTCTCAC	8.6
10:14746811-14747012	site	oligos_7nt_test_vs_ctrl_m3	R	-71	-61	ATGACTCTCAG	8.4
10:36997006-36997207	site	oligos_7nt_test_vs_ctrl_m3	R	80	90	TAGACTCTCCC	8.7
10:50700437-50700638	site	oligos_7nt_test_vs_ctrl_m3	R	72	82	CTGACTCTCAA	7.7
10:59950652-59950853	site	oligos_7nt_test_vs_ctrl_m3	R	-70	-60	TGGACTCTCGC	8.9
10:77652867-77653068	site	oligos_7nt_test_vs_ctrl_m3	D	45	55	AGGACTCTCAA	8.0
10:128047660-128047861	site	oligos_7nt_test_vs_ctrl_m3	R	-64	-54	GTGACTCTCGT	9.5
11:50207459-50207660	site	oligos_7nt_test_vs_ctrl_m3	R	82	92	TTGACTCTCCC	8.1
11:69998373-69998574	site	oligos_7nt_test_vs_ctrl_m3	D	68	78	AGGACTCTCTT	8.4
11:86733616-86733817	site	oligos_7nt_test_vs_ctrl_m3	D	-31	-21	GAGACTCTCCT	8.4
12:8499218-8499419	site	oligos_7nt_test_vs_ctrl_m3	R	38	48	CGGACTCTCTC	9.3
12:72048760-72048961	site	oligos_7nt_test_vs_ctrl_m3	R	63	73	TAGACTCTCTA	9.2
12:96922631-96922832	site	oligos_7nt_test_vs_ctrl_m3	D	52	62	GTGACTCTCGT	9.5
12:108737345-108737546	site	oligos_7nt_test_vs_ctrl_m3	R	-74	-64	AGGACTCTCTG	8.5
13:64996602-64996803	site	oligos_7nt_test_vs_ctrl_m3	D	-70	-60	GCGACTCTCTC	9.4
13:107787706-107787907	site	oligos_7nt_test_vs_ctrl_m3	R	-20	-10	GAGACTCTCTT	8.6
14:52205262-52205463	site	oligos_7nt_test_vs_ctrl_m3	R	80	90	AGGACTCTCTA	8.8
14:52237389-52237590	site	oligos_7nt_test_vs_ctrl_m3	R	23	33	TGGACTCTCTG	8.3
15:8290731-8290932	site	oligos_7nt_test_vs_ctrl_m3	R	-29	-19	CAGACTCTCCT	7.9
15:8351574-8351775	site	oligos_7nt_test_vs_ctrl_m3	R	-30	-20	TGGACTCTCAG	8.1
15:12118094-12118295	site	oligos_7nt_test_vs_ctrl_m3	D	21	31	CTGACTCTCCG	9.0
15:30094979-30095180	site	oligos_7nt_test_vs_ctrl_m3	D	-25	-15	GCGACTCTCTC	9.4
15:66613091-66613292	site	oligos_7nt_test_vs_ctrl_m3	R	-34	-24	AAGACTCTCCA	8.0
16:87555714-87555915	site	oligos_7nt_test_vs_ctrl_m3	R	18	28	GAGACTCTCGG	9.3
17:12967533-12967734	site	oligos_7nt_test_vs_ctrl_m3	R	-1	9	TAGACTCTCCC	8.7
18:6111876-6112077	site	oligos_7nt_test_vs_ctrl_m3	R	-48	-38	CAGACTCTCAA	7.7
18:24014289-24014490	site	oligos_7nt_test_vs_ctrl_m3	D	-38	-28	TGGACTCTCTG	8.3
19:6975312-6975513	site	oligos_7nt_test_vs_ctrl_m3	D	75	85	GCGACTCTACG	7.8
19:11438375-11438576	site	oligos_7nt_test_vs_ctrl_m3	D	-56	-46	AAGACTCTCAG	8.3
19:53988077-53988278	site	oligos_7nt_test_vs_ctrl_m3	D	-13	-3	CTGACTCTCTT	8.1
19:53988077-53988278	site	oligos_7nt_test_vs_ctrl_m3	D	74	84	TAGACTCTCTC	9.0
2:18080702-18080903	site	oligos_7nt_test_vs_ctrl_m3	D	-88	-78	ATGACTCTCAT	8.6
2:26921920-26922121	site	oligos_7nt_test_vs_ctrl_m3	R	68	78	TTGACTCTCGT	9.0
2:45356984-45357185	site	oligos_7nt_test_vs_ctrl_m3	D	-75	-65	TGGACTCTCTA	8.6
2:72970852-72971053	site	oligos_7nt_test_vs_ctrl_m3	R	0	10	GGGACTCTCGG	9.2
2:90909544-90909745	site	oligos_7nt_test_vs_ctrl_m3	D	-12	-2	GGGACTCTCTA	8.9
3:22459990-22460191	site	oligos_7nt_test_vs_ctrl_m3	D	-89	-79	GCGACTCTCTC	9.4
3:101581952-101582153	site	oligos_7nt_test_vs_ctrl_m3	R	73	83	ATGACTCTCCA	8.2
3:104752665-104752866	site	oligos_7nt_test_vs_ctrl_m3	D	16	26	GTGACTCTCTT	8.7
4:48468336-48468537	site	oligos_7nt_test_vs_ctrl_m3	D	81	91	GTGACTCTCCG	9.5
4:95632907-95633108	site	oligos_7nt_test_vs_ctrl_m3	R	-79	-69	AAGACTCTCTC	8.6
4:129839492-129839693	site	oligos_7nt_test_vs_ctrl_m3	D	62	72	GCGACTCTCAA	8.8
5:31204449-31204650	site	oligos_7nt_test_vs_ctrl_m3	R	54	64	GAGACTCTCGC	9.2
5:31243848-31244049	site	oligos_7nt_test_vs_ctrl_m3	R	68	78	TTGACTCTCCC	8.1
5:115272266-115272467	site	oligos_7nt_test_vs_ctrl_m3	D	-98	-88	TAGACTCGCCG	7.8
5:124885913-124886114	site	oligos_7nt_test_vs_ctrl_m3	R	-71	-61	TGGACTCTCTG	8.3
6:35512090-35512291	site	oligos_7nt_test_vs_ctrl_m3	R	-4	6	ATGACTCTCCT	8.4
6:75297539-75297740	site	oligos_7nt_test_vs_ctrl_m3	R	-42	-32	ATGACTCTCAG	8.4
6:126077119-126077320	site	oligos_7nt_test_vs_ctrl_m3	D	-95	-85	CAGACTCTCTG	8.2
7:15288912-15289113	site	oligos_7nt_test_vs_ctrl_m3	D	85	95	GCGACTCGCGG	7.9
7:112093166-112093367	site	oligos_7nt_test_vs_ctrl_m3	D	22	32	TTGACTCTCAC	8.3
7:123170342-123170543	site	oligos_7nt_test_vs_ctrl_m3	R	27	37	TTGACTCTCCA	7.8
7:131570215-131570416	site	oligos_7nt_test_vs_ctrl_m3	D	-99	-89	TAGACTCGCGG	7.5
9:72061081-72061282	site	oligos_7nt_test_vs_ctrl_m3	R	89	99	AGGACTCTCAA	8.0
9:85325034-85325235	site	oligos_7nt_test_vs_ctrl_m3	R	-69	-59	TAGACTCTCTT	8.9
X:152027775-152027976	site	oligos_7nt_test_vs_ctrl_m3	R	30	40	CTGACTCTCTT	8.1
X:164422883-164423084	site	oligos_7nt_test_vs_ctrl_m3	R	-59	-49	ATGACTCTCAG	8.4
X:164422883-164423084	site	oligos_7nt_test_vs_ctrl_m3	D	-29	-19	ACGACTCTCTT	9.4
;
; Matrices
;	matrix	name                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_test_vs_ctrl_m3	11	4	0	-15.400	9.400	24.800	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                      	matches	scored
;	1	oligos_7nt_test_vs_ctrl_m3	62	0
;		TOTAL          	62	0
; Host name	rsat
; Job started	2025-09-18.095851
; Job done	2025-09-18.095851
; Seconds	0.26
;	user	0.26
;	system	0.02
;	cuser	0.11
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:55015556-55015757	site	oligos_7nt_test_vs_ctrl_m4	D	61	71	TAATTCATGCA	8.0
1:55152813-55153014	site	oligos_7nt_test_vs_ctrl_m4	D	56	66	TTATTCATGAG	8.8
1:131935746-131935947	site	oligos_7nt_test_vs_ctrl_m4	R	85	95	TAATTCATGAA	8.6
1:180093957-180094158	site	oligos_7nt_test_vs_ctrl_m4	D	-30	-20	GAATTCATGGA	7.7
10:17723945-17724146	site	oligos_7nt_test_vs_ctrl_m4	R	83	93	GCATTCATGTT	8.4
10:57782302-57782503	site	oligos_7nt_test_vs_ctrl_m4	D	77	87	GGATTCATGTG	7.5
10:61691294-61691495	site	oligos_7nt_test_vs_ctrl_m4	D	-68	-58	GTATTCATGTG	9.1
10:82431448-82431649	site	oligos_7nt_test_vs_ctrl_m4	D	61	71	TCATTCATGGA	8.0
10:92542411-92542612	site	oligos_7nt_test_vs_ctrl_m4	R	58	68	TTATTCATGGT	8.9
10:128047660-128047861	site	oligos_7nt_test_vs_ctrl_m4	D	78	88	GTATTAATGTT	7.6
10:128084264-128084465	site	oligos_7nt_test_vs_ctrl_m4	R	51	61	ACATTCATGAT	8.8
11:20446647-20446848	site	oligos_7nt_test_vs_ctrl_m4	R	30	40	AAATTCATGCC	7.7
11:59212520-59212721	site	oligos_7nt_test_vs_ctrl_m4	D	52	62	GCATTCATGGC	7.8
11:86267032-86267233	site	oligos_7nt_test_vs_ctrl_m4	R	-94	-84	TTATTCATGAA	9.0
11:86711426-86711627	site	oligos_7nt_test_vs_ctrl_m4	R	6	16	GAATTCATGAG	7.8
11:94292298-94292499	site	oligos_7nt_test_vs_ctrl_m4	R	-3	7	GTATTCATGCC	8.8
12:35773186-35773387	site	oligos_7nt_test_vs_ctrl_m4	D	-4	6	GCATTCATGGA	7.8
12:52516456-52516657	site	oligos_7nt_test_vs_ctrl_m4	D	-44	-34	AAATTCATGTC	8.5
13:34074546-34074747	site	oligos_7nt_test_vs_ctrl_m4	D	-91	-81	TCATTCATGTT	8.5
13:64624414-64624615	site	oligos_7nt_test_vs_ctrl_m4	R	61	71	GGATTCATGTG	7.5
14:24070401-24070602	site	oligos_7nt_test_vs_ctrl_m4	R	20	30	AAATTCATGGT	8.0
14:52084144-52084345	site	oligos_7nt_test_vs_ctrl_m4	D	64	74	GAATTCATGGA	7.7
14:56959765-56959966	site	oligos_7nt_test_vs_ctrl_m4	D	-5	5	ATATTTATGAT	7.5
14:61367149-61367350	site	oligos_7nt_test_vs_ctrl_m4	R	-11	-1	ATATTCATGTT	9.6
14:98025102-98025303	site	oligos_7nt_test_vs_ctrl_m4	R	53	63	GCATTCATGTT	8.4
15:25840375-25840576	site	oligos_7nt_test_vs_ctrl_m4	R	-53	-43	GGATTCATGTG	7.5
15:36605720-36605921	site	oligos_7nt_test_vs_ctrl_m4	D	89	99	AAATTCATGGT	8.0
15:58899099-58899300	site	oligos_7nt_test_vs_ctrl_m4	D	47	57	GTATTAATGTC	7.7
15:59211518-59211719	site	oligos_7nt_test_vs_ctrl_m4	D	-77	-67	TAATTCATGAG	8.3
15:66613091-66613292	site	oligos_7nt_test_vs_ctrl_m4	R	-44	-34	AGATTCATGTT	8.0
15:101691305-101691506	site	oligos_7nt_test_vs_ctrl_m4	D	-58	-48	ACATTCATGAG	8.3
15:103241423-103241624	site	oligos_7nt_test_vs_ctrl_m4	R	0	10	GCATTCATGGC	7.8
17:72848725-72848926	site	oligos_7nt_test_vs_ctrl_m4	D	66	76	GGATTCATGAA	7.6
18:10070233-10070434	site	oligos_7nt_test_vs_ctrl_m4	D	45	55	GAATTCATGGC	7.7
18:27598833-27599034	site	oligos_7nt_test_vs_ctrl_m4	R	-80	-70	GCATTCATGGC	7.8
18:35591178-35591379	site	oligos_7nt_test_vs_ctrl_m4	D	3	13	TAATTCATGTA	9.3
18:36288773-36288974	site	oligos_7nt_test_vs_ctrl_m4	D	-50	-40	TAATTCATGCA	8.0
18:37652466-37652667	site	oligos_7nt_test_vs_ctrl_m4	D	-52	-42	ATATTCATGGA	9.1
18:39486078-39486279	site	oligos_7nt_test_vs_ctrl_m4	D	-10	0	GTATTCATGTC	9.5
18:54699050-54699251	site	oligos_7nt_test_vs_ctrl_m4	D	67	77	CCATTCATGCG	7.8
18:64449143-64449344	site	oligos_7nt_test_vs_ctrl_m4	D	-15	-5	GAATTCATGCG	8.3
18:79959278-79959479	site	oligos_7nt_test_vs_ctrl_m4	R	10	20	GCATTCATGGC	7.8
19:40622559-40622760	site	oligos_7nt_test_vs_ctrl_m4	D	-16	-6	GCATTCATGTT	8.4
2:19993021-19993222	site	oligos_7nt_test_vs_ctrl_m4	D	-17	-7	GCATTCATGTT	8.4
2:22589571-22589772	site	oligos_7nt_test_vs_ctrl_m4	D	58	68	ATATTCATGTC	9.7
2:70023480-70023681	site	oligos_7nt_test_vs_ctrl_m4	D	-100	-90	GGATTCATGAA	7.6
2:70023480-70023681	site	oligos_7nt_test_vs_ctrl_m4	D	-53	-43	ATATACATGGT	7.6
2:83986028-83986229	site	oligos_7nt_test_vs_ctrl_m4	D	-44	-34	CTATTCATGAC	8.7
2:115864230-115864431	site	oligos_7nt_test_vs_ctrl_m4	R	-98	-88	ACATTCATGCC	8.1
2:129750027-129750228	site	oligos_7nt_test_vs_ctrl_m4	D	-41	-31	GGATTCATGTG	7.5
2:143150772-143150973	site	oligos_7nt_test_vs_ctrl_m4	D	-76	-66	ATATTCATGTA	10.1
2:155226364-155226565	site	oligos_7nt_test_vs_ctrl_m4	R	83	93	ATATACATGTG	7.7
2:157168814-157169015	site	oligos_7nt_test_vs_ctrl_m4	R	7	17	GTATTCATGCT	8.7
3:5860459-5860660	site	oligos_7nt_test_vs_ctrl_m4	R	-68	-58	CCATTCATGCG	7.8
3:16214853-16215054	site	oligos_7nt_test_vs_ctrl_m4	R	24	34	TAATTCATGGA	8.3
3:51473525-51473726	site	oligos_7nt_test_vs_ctrl_m4	R	3	13	AAATTCATGCT	7.7
3:76042639-76042840	site	oligos_7nt_test_vs_ctrl_m4	R	45	55	TGATTCATGTG	7.5
3:90361374-90361575	site	oligos_7nt_test_vs_ctrl_m4	D	21	31	TCATTCATGTA	9.0
3:90361374-90361575	site	oligos_7nt_test_vs_ctrl_m4	R	24	34	ATATACATGAA	7.7
3:94984369-94984570	site	oligos_7nt_test_vs_ctrl_m4	R	81	91	ATATACATGTT	8.0
3:152186623-152186824	site	oligos_7nt_test_vs_ctrl_m4	R	-18	-8	TTATTCATGAA	9.0
4:51253379-51253580	site	oligos_7nt_test_vs_ctrl_m4	D	89	99	GAATTCATGCG	8.3
4:65376999-65377200	site	oligos_7nt_test_vs_ctrl_m4	R	-88	-78	GCATTCATGCC	7.7
4:132827945-132828146	site	oligos_7nt_test_vs_ctrl_m4	R	14	24	GCATTCATGGG	7.5
5:43286854-43287055	site	oligos_7nt_test_vs_ctrl_m4	D	43	53	TAATTCATGTG	8.5
5:92187897-92188098	site	oligos_7nt_test_vs_ctrl_m4	D	-67	-57	TTATTTATGTA	7.7
5:149660834-149661035	site	oligos_7nt_test_vs_ctrl_m4	R	-68	-58	TCATTCATGGC	8.0
6:9889897-9890098	site	oligos_7nt_test_vs_ctrl_m4	D	-100	-90	AAATTCATGAC	8.4
6:72434114-72434315	site	oligos_7nt_test_vs_ctrl_m4	D	-68	-58	AAATTCATGTC	8.5
6:98061195-98061396	site	oligos_7nt_test_vs_ctrl_m4	D	-37	-27	CAATTCATGTT	7.6
6:99877814-99878015	site	oligos_7nt_test_vs_ctrl_m4	R	-62	-52	CCATTCATGAT	7.8
6:99877814-99878015	site	oligos_7nt_test_vs_ctrl_m4	D	-5	5	GGATTCATGTT	7.8
6:117923852-117924053	site	oligos_7nt_test_vs_ctrl_m4	D	-93	-83	CAATTCATGAT	7.6
6:125114254-125114455	site	oligos_7nt_test_vs_ctrl_m4	R	46	56	TCATTCATGCC	7.9
7:3983871-3984072	site	oligos_7nt_test_vs_ctrl_m4	D	71	81	TTATACATGTT	7.6
7:12086297-12086498	site	oligos_7nt_test_vs_ctrl_m4	D	-82	-72	AAATTCATGAT	8.4
7:39589112-39589313	site	oligos_7nt_test_vs_ctrl_m4	D	-78	-68	GGATTCATGAA	7.6
7:39589112-39589313	site	oligos_7nt_test_vs_ctrl_m4	R	-75	-65	TTATTCATGAA	9.0
7:89509699-89509900	site	oligos_7nt_test_vs_ctrl_m4	D	14	24	CCATTCATGTC	7.9
7:90208138-90208339	site	oligos_7nt_test_vs_ctrl_m4	R	-92	-82	ATATTAATGTT	7.8
7:90444189-90444390	site	oligos_7nt_test_vs_ctrl_m4	R	-55	-45	ACATTCATGCT	8.1
7:97595219-97595420	site	oligos_7nt_test_vs_ctrl_m4	R	-76	-66	GGATTCATGTC	7.9
7:104501277-104501478	site	oligos_7nt_test_vs_ctrl_m4	R	-95	-85	ATATTAATGTT	7.8
7:104501277-104501478	site	oligos_7nt_test_vs_ctrl_m4	D	-49	-39	TCATTCATGTC	8.6
7:121015324-121015525	site	oligos_7nt_test_vs_ctrl_m4	R	24	34	GGATTCATGTG	7.5
8:42247126-42247327	site	oligos_7nt_test_vs_ctrl_m4	R	78	88	TAATTCATGCT	8.1
8:86725088-86725289	site	oligos_7nt_test_vs_ctrl_m4	R	-69	-59	CTATTCATGAG	8.2
8:94405600-94405801	site	oligos_7nt_test_vs_ctrl_m4	R	-94	-84	TCATTCATGTT	8.5
8:123421397-123421598	site	oligos_7nt_test_vs_ctrl_m4	R	71	81	TCATTCATGTT	8.5
9:62060319-62060520	site	oligos_7nt_test_vs_ctrl_m4	D	-33	-23	TTATTCATGAA	9.0
9:64716807-64717008	site	oligos_7nt_test_vs_ctrl_m4	R	-8	2	CTATTCATGTT	8.6
9:75397910-75398111	site	oligos_7nt_test_vs_ctrl_m4	R	84	94	ACATTCATGGC	8.3
9:79771266-79771467	site	oligos_7nt_test_vs_ctrl_m4	D	-45	-35	ATATTTATGAT	7.5
9:96895818-96896019	site	oligos_7nt_test_vs_ctrl_m4	D	-87	-77	GGATTCATGTG	7.5
9:123689840-123690041	site	oligos_7nt_test_vs_ctrl_m4	D	31	41	GCATTCATGGC	7.8
X:15366229-15366430	site	oligos_7nt_test_vs_ctrl_m4	R	53	63	ATATACATGAA	7.7
X:33605031-33605232	site	oligos_7nt_test_vs_ctrl_m4	R	65	75	TAATTCATGAA	8.6
X:47809930-47810131	site	oligos_7nt_test_vs_ctrl_m4	R	-70	-60	GTATTCATGGT	9.1
X:51005059-51005260	site	oligos_7nt_test_vs_ctrl_m4	R	5	15	ACATTCATGTG	8.5
X:101768947-101769148	site	oligos_7nt_test_vs_ctrl_m4	D	-38	-28	CCATTCATGAT	7.8
X:141980390-141980591	site	oligos_7nt_test_vs_ctrl_m4	D	3	13	GCATTCATGGA	7.8
X:142211516-142211717	site	oligos_7nt_test_vs_ctrl_m4	D	30	40	TTATTCATGGA	8.8
X:151919646-151919847	site	oligos_7nt_test_vs_ctrl_m4	R	-15	-5	ACATTCATGTT	8.8
X:154774722-154774923	site	oligos_7nt_test_vs_ctrl_m4	D	-84	-74	TCATTCATGCT	7.8
;
; Matrices
;	matrix	name                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_test_vs_ctrl_m4	11	4	0	-16.600	9.400	26.000	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                      	matches	scored
;	1	oligos_7nt_test_vs_ctrl_m4	104	0
;		TOTAL          	104	0
; Host name	rsat
; Job started	2025-09-18.095852
; Job done	2025-09-18.095852
; Seconds	0.29
;	user	0.29
;	system	0.02
;	cuser	0.07
;	csystem	0.02
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:55760127-55760328	site	dyads_test_vs_ctrl_m1	R	6	34	ATTCTAAATCGTACCCTTATACTCTCAGA	7.6
1:60692064-60692265	site	dyads_test_vs_ctrl_m1	R	29	57	TTCCATTGGTCTACTTGTCTGTCTCTATA	8.1
1:86530380-86530581	site	dyads_test_vs_ctrl_m1	D	10	38	TTCCAGTAACTTTTGTGTATGTACCTAGC	8.6
1:114228420-114228621	site	dyads_test_vs_ctrl_m1	R	69	97	AAACTGCAGCCCAGGCTACTATACCCAGC	9.4
1:133659276-133659477	site	dyads_test_vs_ctrl_m1	D	55	83	TCTCTTTATTCGCTCCTTCTGCCACCATC	8.7
1:149343933-149344134	site	dyads_test_vs_ctrl_m1	R	-64	-36	AATCATTAACTATTATTTTTGTACTTATA	9.4
1:186968934-186969135	site	dyads_test_vs_ctrl_m1	R	49	77	TCTCAGAAGTAGACCCAACTCTTCCTACG	8.3
10:56497479-56497680	site	dyads_test_vs_ctrl_m1	R	-65	-37	CTTCATAGTTCATTGCTTCTGCCTCTACG	9.9
10:59807493-59807694	site	dyads_test_vs_ctrl_m1	R	7	35	TTTTAAAACCTTCTGCTACCATATCCACC	8.6
10:67185981-67186182	site	dyads_test_vs_ctrl_m1	D	-11	17	GTTCTGTGGTCTTGGCTTTTCTTCCTATA	9.0
10:73202476-73202677	site	dyads_test_vs_ctrl_m1	R	-88	-60	CTACCATATTGTCCTCTTCTTCCTCCATA	7.7
10:120923653-120923854	site	dyads_test_vs_ctrl_m1	D	29	57	ATACAGAAAGATTGGTTACTTTATATATT	9.7
10:129665038-129665239	site	dyads_test_vs_ctrl_m1	R	72	100	ACACATCAATCGTATCTTCATCCTCCATT	8.0
11:12142380-12142581	site	dyads_test_vs_ctrl_m1	R	11	39	AAATAGAAGTAGAAGGTACTCTACCCAAC	8.2
11:31934624-31934825	site	dyads_test_vs_ctrl_m1	D	-75	-47	CTTTGGTATAATATATTTACTTCTCCATA	7.8
11:53420947-53421148	site	dyads_test_vs_ctrl_m1	R	-94	-66	AGTTAGTATATAATACTTTGCTCACCATT	7.5
11:75703357-75703558	site	dyads_test_vs_ctrl_m1	R	-84	-56	TCACATTAATCTTCGTAACCTTTACCAGC	10.0
11:77294068-77294269	site	dyads_test_vs_ctrl_m1	R	58	86	CATCAGACTCCTTTTCTTCTTTTTCTTTA	7.8
11:77709708-77709909	site	dyads_test_vs_ctrl_m1	D	53	81	ATATACAAATATATATATATATATACATA	8.1
11:77709708-77709909	site	dyads_test_vs_ctrl_m1	D	55	83	ATACAAATATATATATATATATACATATA	8.4
11:93945469-93945670	site	dyads_test_vs_ctrl_m1	R	-75	-47	CTACAAAACCTTATGTTATTAACCCCTCT	8.4
12:3109857-3110058	site	dyads_test_vs_ctrl_m1	R	-18	10	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
12:3109857-3110058	site	dyads_test_vs_ctrl_m1	R	20	48	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
12:8751261-8751462	site	dyads_test_vs_ctrl_m1	D	5	33	TACAAGCGGCCTTATGTACATTTCCCAAC	8.0
12:10154084-10154285	site	dyads_test_vs_ctrl_m1	R	71	99	GTTCATGTCGCTTTTGTTCTCTTCCCGAA	8.6
12:14929895-14930096	site	dyads_test_vs_ctrl_m1	R	39	67	AATAAATACAACCCGTTACTCTTCCTAGT	8.2
12:17233836-17234037	site	dyads_test_vs_ctrl_m1	R	36	64	ACAGAGAAACATTGGCTACTTTAACCACC	9.5
12:31007094-31007295	site	dyads_test_vs_ctrl_m1	R	4	32	TTTTTTAATTTTAACATACTGTCCCAATA	7.7
12:32850947-32851148	site	dyads_test_vs_ctrl_m1	D	-77	-49	TTTCAGTGATTTACCAGTCTGTTTCCAAC	9.9
12:51409614-51409815	site	dyads_test_vs_ctrl_m1	R	48	76	AAACAAAAAACCAAACTACTGTCCCCATA	11.7
12:53184222-53184423	site	dyads_test_vs_ctrl_m1	D	-40	-12	TATCTGAAACCTTGTAGTCTCTGACCAGC	9.4
12:67037108-67037309	site	dyads_test_vs_ctrl_m1	R	-75	-47	CTACAGTGGATTTGTATACTTTTTTCAAT	8.8
12:99047331-99047532	site	dyads_test_vs_ctrl_m1	R	48	76	TGTGCATACTCTGTAGTATTTTCCACACG	7.5
13:9668663-9668864	site	dyads_test_vs_ctrl_m1	R	-12	16	GTTGAGTACATGAGTTTTCTCTAACCAGT	9.0
13:75771987-75772188	site	dyads_test_vs_ctrl_m1	D	-30	-2	TATAAAAAGAGTAGATATATTTAACCATA	8.0
14:16413597-16413798	site	dyads_test_vs_ctrl_m1	R	-64	-36	CTTCCGTAAACCATAATAACTTAACCGTA	9.2
14:19417204-19417405	site	dyads_test_vs_ctrl_m1	R	-86	-58	CTACAGTGGACATTTCTACATTTTCGACC	7.7
14:19417204-19417405	site	dyads_test_vs_ctrl_m1	R	-48	-20	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
14:19417204-19417405	site	dyads_test_vs_ctrl_m1	R	68	96	TTTCTGTGATTTTCATTTTTCTCGCCATA	10.9
14:56956861-56957062	site	dyads_test_vs_ctrl_m1	D	-34	-6	TTTGAATACCCTATTCTACTTTAACACTA	8.8
14:112132278-112132479	site	dyads_test_vs_ctrl_m1	R	62	90	AAACTGCAGCCCAGGCTACTATACCCAGC	9.4
15:8351574-8351775	site	dyads_test_vs_ctrl_m1	R	-60	-32	CTTCTATAACTCAGGATTCAGACTCCATA	7.7
15:36771668-36771869	site	dyads_test_vs_ctrl_m1	D	-62	-34	ATTCATAAAACTTTTATTCCACTTACATG	9.6
15:37967831-37968032	site	dyads_test_vs_ctrl_m1	D	31	59	TTTCAGAACATTTTACATTTTTCCCCCTC	9.6
15:58900176-58900377	site	dyads_test_vs_ctrl_m1	R	68	96	AACGTGAAAACTTTTATTCTATGTACAAT	8.1
15:73343126-73343327	site	dyads_test_vs_ctrl_m1	D	-23	5	AATGAAAGACCTTTAATACTCGTTCCATT	10.4
15:77079096-77079297	site	dyads_test_vs_ctrl_m1	R	-89	-61	ATTCATTATTTTTTGTATTACTCTCCATG	9.6
16:11220452-11220653	site	dyads_test_vs_ctrl_m1	D	-13	15	TTTCATTATTGTAGGCAATTATGTCCACA	8.6
16:22246480-22246681	site	dyads_test_vs_ctrl_m1	R	-45	-17	ATTTAAAAGGTTTTTCTACTGAATCCAGG	8.0
16:33497994-33498195	site	dyads_test_vs_ctrl_m1	R	28	56	CTACAGAATATTTATTTTTTTTACTAAAA	7.6
16:37697133-37697334	site	dyads_test_vs_ctrl_m1	D	-59	-31	ACCCAGAGCCTTTTCTTTTTCTTCCCAAG	8.7
16:38245133-38245334	site	dyads_test_vs_ctrl_m1	D	-83	-55	AAACAAAATTTATTATTATTATATATATA	8.7
16:54120008-54120209	site	dyads_test_vs_ctrl_m1	D	-21	7	AATCAGAACCCTAGTGTTTCTTAACTACG	9.7
16:75561405-75561606	site	dyads_test_vs_ctrl_m1	D	63	91	TTATAGAATTTCTCTTTTCTAGTTCTATA	7.8
16:84647608-84647809	site	dyads_test_vs_ctrl_m1	R	-49	-21	CCCCAGTACGTCTTTGCTCTCTTCCCAAC	9.7
16:91034115-91034316	site	dyads_test_vs_ctrl_m1	D	-41	-13	CCCCAGAAGACCCTTCTAATCTCTCAATA	7.7
16:94242118-94242319	site	dyads_test_vs_ctrl_m1	D	53	81	TTTTAAAACCTTCTGCTACCATATCCACC	8.6
17:3197871-3198072	site	dyads_test_vs_ctrl_m1	D	-31	-3	ATTCAAAACACTTGGGTTCCCCCTCCTCA	7.5
17:23344270-23344471	site	dyads_test_vs_ctrl_m1	D	71	99	TTTCATAAACCAATGGTATCTTATCAAAA	7.9
17:53354579-53354780	site	dyads_test_vs_ctrl_m1	R	-76	-48	CTTCAGATGTTCTTCATACATTTTACAAA	7.6
17:79934084-79934285	site	dyads_test_vs_ctrl_m1	R	-78	-50	AGTCTGTCGTCCTCATTTATGATCCCATA	7.9
17:91220275-91220476	site	dyads_test_vs_ctrl_m1	R	-6	22	CCTCTCTGCTCTATCTATCTATTTCCAGT	8.3
17:91220275-91220476	site	dyads_test_vs_ctrl_m1	R	54	82	CCTCTCTGCTCTATCTATCTATTTCCAGT	8.3
18:15831219-15831420	site	dyads_test_vs_ctrl_m1	D	7	35	TTTCCTTGTTATTACTTTCTCTCCACACA	9.0
18:34909808-34910009	site	dyads_test_vs_ctrl_m1	D	-63	-35	GCACAGCAGTCTCGGCTACTTTCCGAACA	8.2
18:35581883-35582084	site	dyads_test_vs_ctrl_m1	R	58	86	ATTAAGATATAATTCTTTATTTTCCCATA	10.0
18:36667482-36667683	site	dyads_test_vs_ctrl_m1	D	-37	-9	TTTCTGCAATTAATCTTTTTACTCCCACC	8.4
18:36667482-36667683	site	dyads_test_vs_ctrl_m1	D	-34	-6	CTGCAATTAATCTTTTTACTCCCACCATC	7.6
18:43477184-43477385	site	dyads_test_vs_ctrl_m1	D	13	41	ATTCCATAAACGGTATTATTAACACCAAA	8.5
18:61589395-61589596	site	dyads_test_vs_ctrl_m1	D	-4	24	TTTCAGTGCTTTTATTTACTATGCACTTA	9.7
19:4801596-4801797	site	dyads_test_vs_ctrl_m1	R	33	61	TATCAGAGTCGCAGCTTTCGTTCCGCCGC	8.3
19:21281394-21281595	site	dyads_test_vs_ctrl_m1	D	-41	-13	CTTCAGTTCTTAATGTAACTGTACCCTTC	7.6
19:29809764-29809965	site	dyads_test_vs_ctrl_m1	D	-86	-58	TTTCATTAATTTTTCCTTCTGCGATTATA	8.7
2:5961449-5961650	site	dyads_test_vs_ctrl_m1	R	-14	14	TCTCCGCAGCACTTTTTACTTTCCTCGGT	8.0
2:24593420-24593621	site	dyads_test_vs_ctrl_m1	R	-36	-8	GCTTAGAAATGTACTTTTCTGTAGACATG	8.0
2:36389246-36389447	site	dyads_test_vs_ctrl_m1	R	15	43	ACACATCAATCGTATCTTCATCCTCCATT	8.0
2:53145578-53145779	site	dyads_test_vs_ctrl_m1	D	18	46	CTTCAAAAGTAGTGTTTACTTCAACTACA	7.6
2:85041039-85041240	site	dyads_test_vs_ctrl_m1	R	-35	-7	CCTCAAAGCGCTTTTCTACTTCTTCCCTA	9.6
2:98662218-98662419	site	dyads_test_vs_ctrl_m1	D	-3	25	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
2:98666864-98667065	site	dyads_test_vs_ctrl_m1	R	-72	-44	TTTCCGTGATTTTCAGGTTTCTCGCCATA	9.4
2:98666864-98667065	site	dyads_test_vs_ctrl_m1	R	8	36	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
2:98666864-98667065	site	dyads_test_vs_ctrl_m1	R	46	74	TTTCTTTGATTTTCAGTTTTCTTGCCATA	7.7
2:103766550-103766751	site	dyads_test_vs_ctrl_m1	D	-47	-19	AATAAAAATAGTTTCCTTCCATATCCAGG	8.5
2:121437724-121437925	site	dyads_test_vs_ctrl_m1	R	-67	-39	ATTCAGAGTATATCCATTCTGTCCTCTCT	8.0
2:131322086-131322287	site	dyads_test_vs_ctrl_m1	D	32	60	AGCCAATAATACAACCTTCTATCCGCATA	10.9
2:153317439-153317640	site	dyads_test_vs_ctrl_m1	R	-44	-16	CGCCAGTAATCATCCTTATCATCCCCGTC	9.4
2:174346330-174346531	site	dyads_test_vs_ctrl_m1	D	56	84	ACACCGCAACCTTTCCTTTTTCCCCCAGT	9.2
3:37714961-37715162	site	dyads_test_vs_ctrl_m1	R	40	68	ACAGAGAAACATTGGCTACTTTAACCACC	9.5
3:95338458-95338659	site	dyads_test_vs_ctrl_m1	D	58	86	TCTCAAAAAGGTAGCGCTCTATCTCCTGC	8.0
3:99500831-99501032	site	dyads_test_vs_ctrl_m1	R	-26	2	ATTCATCACCCCCTTTATCTATCAGCATG	7.7
3:103744046-103744247	site	dyads_test_vs_ctrl_m1	R	25	53	TTCCATTGCTCATCTGTTCTCCCCCCAGG	7.8
3:112478615-112478816	site	dyads_test_vs_ctrl_m1	R	45	73	CTTCAGAGCATCTTCTTTCCTACTTCAGA	7.6
3:116631307-116631508	site	dyads_test_vs_ctrl_m1	R	-49	-21	TCTCTAAAGTGTATATTTTTGTGTCCAGT	9.3
3:135231563-135231764	site	dyads_test_vs_ctrl_m1	R	1	29	TTCTAGTGACTCCGGGTTCTGTTCCCAAC	8.3
3:152232543-152232744	site	dyads_test_vs_ctrl_m1	R	-93	-65	TATCAGTAGTGATAGTTATTTTGTACATT	10.1
4:44123859-44124060	site	dyads_test_vs_ctrl_m1	D	58	86	CTCCAGTAACTTTTGTATATGTACCTAGC	9.4
4:73309982-73310183	site	dyads_test_vs_ctrl_m1	R	13	41	ATTGAGAAGAGTGTTGTTCAGTTTCCACG	7.7
4:74228178-74228379	site	dyads_test_vs_ctrl_m1	D	-57	-29	ACCCATACTTCTGGCCTTCTATCCCCACA	9.1
4:82291556-82291757	site	dyads_test_vs_ctrl_m1	D	11	39	AATCAGTGGTCCATGTTATTCCCCCCAGT	11.7
4:82294688-82294889	site	dyads_test_vs_ctrl_m1	D	72	100	AATCTGTGTACTTACCTATAATAACCAAT	8.9
4:95632907-95633108	site	dyads_test_vs_ctrl_m1	D	-32	-4	TATTATTATTATTATTATTATTTACCATT	8.0
4:95632907-95633108	site	dyads_test_vs_ctrl_m1	D	-26	2	TATTATTATTATTATTTACCATTTCTACT	8.8
4:111807234-111807435	site	dyads_test_vs_ctrl_m1	D	21	49	TTTTAAAACCTTCTGCTACCATATCCACC	8.6
4:119137131-119137332	site	dyads_test_vs_ctrl_m1	R	-56	-28	TATATAAATATCTTCCATCTATACACAGC	7.9
4:123350733-123350934	site	dyads_test_vs_ctrl_m1	D	-68	-40	CTTCATAACACAATTCTTCTTTTACAATT	10.3
4:132148513-132148714	site	dyads_test_vs_ctrl_m1	D	-88	-60	TCTCAACGAAGTCGGCTAATTTTGCCATT	7.9
5:20987139-20987340	site	dyads_test_vs_ctrl_m1	D	-80	-52	TATCATAAAAGTATTACTATATTAACAGG	8.1
5:22486759-22486960	site	dyads_test_vs_ctrl_m1	R	-72	-44	TGCCAGCAGCCCTTGTTTATTTGCCCAGC	8.5
5:22693550-22693751	site	dyads_test_vs_ctrl_m1	D	32	60	GATCAAAATTCTTCTTTACAATTTCTAAT	8.4
5:33076171-33076372	site	dyads_test_vs_ctrl_m1	R	-88	-60	TCACCGTATTGTTTTTTGCTTTATACACA	8.0
5:69461527-69461728	site	dyads_test_vs_ctrl_m1	R	26	54	AAACATCTATCTTCTTGACTTTCCCCATT	7.6
5:89690127-89690328	site	dyads_test_vs_ctrl_m1	D	34	62	ATTCTGTAACCTGATTTAATGTCTTCAAA	7.5
5:92187897-92188098	site	dyads_test_vs_ctrl_m1	R	-62	-34	TATTAGTTGCTTTAGTTTCTCTCTACATA	9.6
5:110118480-110118681	site	dyads_test_vs_ctrl_m1	D	65	93	CCTTATAGTCCATTGCTTCTGCCTCTACG	7.6
6:27230894-27231095	site	dyads_test_vs_ctrl_m1	R	-6	22	CTTCAGAACTTATGTTTATTTTTGCCATA	11.5
6:27230894-27231095	site	dyads_test_vs_ctrl_m1	D	14	42	GTTCTGAAGCTGTTACTTCTCCCTACAGC	8.0
6:27230894-27231095	site	dyads_test_vs_ctrl_m1	D	55	83	AATCCGTAATTTATTGGACCTTGTCCAAC	8.9
6:31475433-31475634	site	dyads_test_vs_ctrl_m1	D	42	70	TTCCAGAGATCCTGAGTTCAATTCCCAGC	9.3
6:44792892-44793093	site	dyads_test_vs_ctrl_m1	R	-21	7	CGTCAGGACCGCTACGGACCTCCACCAGA	8.3
6:49252886-49253087	site	dyads_test_vs_ctrl_m1	D	-92	-64	TTTCATACTTCGTGTATTCTTCCCCAATT	8.4
6:72433132-72433333	site	dyads_test_vs_ctrl_m1	D	-75	-47	GGTGATGGCTTCTCTGTACTTACGCCATA	7.6
6:72434114-72434315	site	dyads_test_vs_ctrl_m1	R	54	82	ATTGAAAGTGTTAGCCTTTTTTCCCCAGA	8.4
6:88578208-88578409	site	dyads_test_vs_ctrl_m1	R	16	44	CTCCATAAAACATTCTTACTATTTCCTTC	9.7
6:94501617-94501818	site	dyads_test_vs_ctrl_m1	D	-49	-21	TTTCATTTACTGTTATTTACTTCTCCAAA	7.7
6:127282170-127282371	site	dyads_test_vs_ctrl_m1	D	-5	23	TGTCTGTGTCTTTCATTTTTCTTGCCATC	7.7
6:145266549-145266750	site	dyads_test_vs_ctrl_m1	D	-67	-39	GTTCTGAACTATAAGCTTATTACTCCAGC	9.3
6:145932827-145933028	site	dyads_test_vs_ctrl_m1	D	23	51	CGTCAGGACCGCTACGGACCTCCACCAGA	8.3
7:7062290-7062491	site	dyads_test_vs_ctrl_m1	D	-76	-48	TCTCTGTATACTATGAATGTCTTCACACA	7.5
7:16562466-16562667	site	dyads_test_vs_ctrl_m1	R	-77	-49	TTTGTGAAGTGCAGGATATTATCCCCATC	8.4
7:29799283-29799484	site	dyads_test_vs_ctrl_m1	D	6	34	ATTCTGTAACCTGATTTAATGTCTTCAAA	7.5
7:84615563-84615764	site	dyads_test_vs_ctrl_m1	D	9	37	AACCAAAAATCTATTCTTCTGATGACATG	7.7
7:90208138-90208339	site	dyads_test_vs_ctrl_m1	D	-45	-17	TCACAGTATGTTTGATTTTTATCCACAAG	8.9
7:123194182-123194383	site	dyads_test_vs_ctrl_m1	D	-95	-67	GATCAGTAACTATGCATACTGTAACCAAG	11.8
8:3583767-3583968	site	dyads_test_vs_ctrl_m1	D	-28	0	ACAGAGAAACATTGGCTACTTTAACCACC	9.5
8:4040161-4040362	site	dyads_test_vs_ctrl_m1	D	45	73	TGTCAAAAACAGTTGGTACATATTCCAAT	7.7
8:20986996-20987197	site	dyads_test_vs_ctrl_m1	R	-10	18	CTACACAACTCCTTCTTACTTTCCCCATG	11.9
8:25640813-25641014	site	dyads_test_vs_ctrl_m1	D	18	46	AAACTTTAGCCCTACTGACTATTACCATT	7.7
8:34111497-34111698	site	dyads_test_vs_ctrl_m1	D	-18	10	CTTCAGATGTTCTTCATACATTTTACAAA	7.6
8:41658337-41658538	site	dyads_test_vs_ctrl_m1	D	-2	26	CTTCATAGACTCATTGTACTCTATCTTTT	8.2
8:78486064-78486265	site	dyads_test_vs_ctrl_m1	R	35	63	GTTCCGAACTATAAGCTTATTACTCCAGC	10.2
8:112013923-112014124	site	dyads_test_vs_ctrl_m1	D	-73	-45	TTTTAAAACCTTCTGCTACCATATCCACC	8.6
9:3000460-3000661	site	dyads_test_vs_ctrl_m1	D	-68	-40	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
9:3000460-3000661	site	dyads_test_vs_ctrl_m1	D	-30	-2	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
9:3000460-3000661	site	dyads_test_vs_ctrl_m1	D	50	78	TTTCCGTGATTTTCAGTTTTCTCGACATA	10.0
9:3006722-3006923	site	dyads_test_vs_ctrl_m1	D	-15	13	TTTCCGTGATTTTCAGTTTTCTCGCCATA	11.7
9:3008437-3008638	site	dyads_test_vs_ctrl_m1	D	-30	-2	TTTCCGTGATTTTCAGTTTTCTTGCCATA	9.9
9:3009928-3010129	site	dyads_test_vs_ctrl_m1	D	21	49	TTTCCGTGATTTTCAGTTTTCTCGCCATA	11.7
9:3014038-3014239	site	dyads_test_vs_ctrl_m1	D	-53	-25	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
9:3014038-3014239	site	dyads_test_vs_ctrl_m1	D	-15	13	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
9:3014038-3014239	site	dyads_test_vs_ctrl_m1	D	65	93	TTTCAGTGATTTTCAGTTTTCTCGCCATA	12.7
9:3015300-3015501	site	dyads_test_vs_ctrl_m1	D	-85	-57	TTTCCTTGATTTTCAGTTTTCTTGCCATA	7.6
9:3015300-3015501	site	dyads_test_vs_ctrl_m1	D	31	59	TTTCCATGATTTTCAGTTTTCTCGCCATA	9.7
9:3017931-3018132	site	dyads_test_vs_ctrl_m1	D	-85	-57	TTTCCGTGATTTTCAGTTTTCTTGCCATA	9.9
9:3017931-3018132	site	dyads_test_vs_ctrl_m1	D	31	59	TTTCCATGATTTTCAGTTTTCTCGCCATA	9.7
9:3020812-3021013	site	dyads_test_vs_ctrl_m1	D	-46	-18	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
9:3020812-3021013	site	dyads_test_vs_ctrl_m1	D	-8	20	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
9:3020812-3021013	site	dyads_test_vs_ctrl_m1	D	72	100	TTTCAGTGATTTTCAGTTTTCTCGCCATA	12.7
9:3022432-3022633	site	dyads_test_vs_ctrl_m1	D	-87	-59	TTTCAATGATTTTCATTTTTCTTGCCATA	10.0
9:3022432-3022633	site	dyads_test_vs_ctrl_m1	D	31	59	TTTCCGTGATTTTCAGTTTTCTTGCCATA	9.9
9:3024368-3024569	site	dyads_test_vs_ctrl_m1	D	-92	-64	TTTCCGTGATTTTCAGTTTCCTCGCCATA	9.9
9:3024368-3024569	site	dyads_test_vs_ctrl_m1	D	24	52	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
9:3024368-3024569	site	dyads_test_vs_ctrl_m1	D	62	90	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
9:3026320-3026521	site	dyads_test_vs_ctrl_m1	D	-58	-30	TTTCCTTGATTTTCAGTTTTCTTGCCATA	7.6
9:3026320-3026521	site	dyads_test_vs_ctrl_m1	D	-20	8	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
9:3026320-3026521	site	dyads_test_vs_ctrl_m1	D	60	88	TTTCAGTGATTTTCAGTTTCCTTGCCATA	9.1
9:3028738-3028939	site	dyads_test_vs_ctrl_m1	D	-17	11	TTTCCGTGATTTTCAGTTTTCTTGCCATA	9.9
9:3035002-3035203	site	dyads_test_vs_ctrl_m1	D	-25	3	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
9:3035002-3035203	site	dyads_test_vs_ctrl_m1	D	13	41	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
9:3037313-3037514	site	dyads_test_vs_ctrl_m1	D	-58	-30	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
9:3037313-3037514	site	dyads_test_vs_ctrl_m1	D	-20	8	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
9:35305341-35305542	site	dyads_test_vs_ctrl_m1	R	-87	-59	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
9:35305341-35305542	site	dyads_test_vs_ctrl_m1	R	29	57	TTTCCGTGATTTTCAGTTTTCTCCCCATA	11.8
9:70573689-70573890	site	dyads_test_vs_ctrl_m1	R	-56	-28	TCTCATAATCCTTGGCTTCCTTCTCCGGG	9.8
9:85325034-85325235	site	dyads_test_vs_ctrl_m1	D	53	81	GGTCAGAATCATTGCACACTTTAACCATT	8.7
9:88449808-88450009	site	dyads_test_vs_ctrl_m1	R	-82	-54	GTTCAAAAACTATCTGTACTATCTGTACT	9.2
MT:5585-5786	site	dyads_test_vs_ctrl_m1	D	63	91	CATCAGTAGACCTAACAATTTTCTCCCTT	8.1
X:5265901-5266102	site	dyads_test_vs_ctrl_m1	R	-10	18	ATTGAGTAGACAGTTGTTCAATTTCCATG	7.6
X:23800666-23800867	site	dyads_test_vs_ctrl_m1	R	54	82	ATACTATATGGTACCTTATTTTCTCCAGG	8.8
X:33363028-33363229	site	dyads_test_vs_ctrl_m1	D	46	74	ACTCAAAATCATTGCCATCTACTCCTATA	8.4
X:33581522-33581723	site	dyads_test_vs_ctrl_m1	R	47	75	TTACAGAATTGGAAAATATTTTCACCAAC	7.7
X:48010296-48010497	site	dyads_test_vs_ctrl_m1	R	16	44	TCTTCGTAGTTTACCTGACCATCCCCATC	7.7
X:61785809-61786010	site	dyads_test_vs_ctrl_m1	R	-52	-24	ACTCAGTAGTCCATATTGCTATCTCATCA	9.4
X:105278704-105278905	site	dyads_test_vs_ctrl_m1	D	-99	-71	TGTGCATACTCTGTAGTATTTTCCACACG	7.5
X:114981201-114981402	site	dyads_test_vs_ctrl_m1	R	70	98	AAACTAAAATCTACCTTTCTCGCTCCCCG	7.9
;
; Matrices
;	matrix	name                 	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	dyads_test_vs_ctrl_m1	29	4	0	-29.100	18.900	48.000	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                 	matches	scored
;	1	dyads_test_vs_ctrl_m1	184	0
;		TOTAL          	184	0
; Host name	rsat
; Job started	2025-09-18.095853
; Job done	2025-09-18.095853
; Seconds	0.25
;	user	0.25
;	system	0.03
;	cuser	0.08
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:6247971-6248172	site	dyads_test_vs_ctrl_m2	D	-49	-24	TTTGCAGTTTGTTAGAAACTAAAAAT	8.4
1:8816140-8816341	site	dyads_test_vs_ctrl_m2	R	-22	3	GATTTTGAAAACTAATAACTTAAAAC	7.7
1:9746119-9746320	site	dyads_test_vs_ctrl_m2	R	-60	-35	AATCCGGACGATTACACTCCTGTAAA	8.2
1:58646716-58646917	site	dyads_test_vs_ctrl_m2	R	-43	-18	GGTCCAGTACTTTTTCTACCACAAAT	9.2
1:63165051-63165252	site	dyads_test_vs_ctrl_m2	D	-27	-2	TTTACAGTTAACATAAATTTTACATT	9.4
1:108460137-108460338	site	dyads_test_vs_ctrl_m2	R	-53	-28	TTTCCAAAAAATGTAAGATTTAAAGG	8.6
1:161818417-161818618	site	dyads_test_vs_ctrl_m2	D	-13	12	ACTTTAGATCGCCTTCGTTTTAAAGC	7.8
1:162671906-162672107	site	dyads_test_vs_ctrl_m2	D	7	32	TATATATATGTATATATATTTATATT	8.8
1:162671906-162672107	site	dyads_test_vs_ctrl_m2	R	7	32	AATATAAATATATATACATATATATA	8.9
1:162671906-162672107	site	dyads_test_vs_ctrl_m2	D	13	38	TATGTATATATATTTATATTTATATA	8.8
1:162671906-162672107	site	dyads_test_vs_ctrl_m2	R	13	38	TATATAAATATAAATATATATACATA	7.7
10:20325356-20325557	site	dyads_test_vs_ctrl_m2	R	38	63	TATGCAGTCTCTTTCAGTTTATAATT	7.6
10:39822406-39822607	site	dyads_test_vs_ctrl_m2	R	-70	-45	CCTCTAAATCTATTAATAATAATATA	7.8
10:40301972-40302173	site	dyads_test_vs_ctrl_m2	D	-72	-47	TTTTATATTAACTTTTTTTTAAAAAA	8.5
10:69019628-69019829	site	dyads_test_vs_ctrl_m2	D	-36	-11	GCTACAGTGTACTTAGATATAATAAT	8.5
10:96619324-96619525	site	dyads_test_vs_ctrl_m2	R	-42	-17	AAACCAGACCTCCACTTTCTAAAAAT	7.9
10:108278716-108278917	site	dyads_test_vs_ctrl_m2	D	-83	-58	ATTCGAATAAATTGTACATTTAAAGC	8.8
10:108278716-108278917	site	dyads_test_vs_ctrl_m2	R	-39	-14	AATATAGTATACAATACACTCAATAA	8.2
10:120923653-120923854	site	dyads_test_vs_ctrl_m2	D	52	77	TATATTATATATATATATTTTAACAC	7.7
11:3661704-3661905	site	dyads_test_vs_ctrl_m2	D	-91	-66	TTTCCTATAGCTGAATAATTCAAAAT	8.1
11:23489473-23489674	site	dyads_test_vs_ctrl_m2	R	17	42	ATACAAGTAAACTTAATTTTGATAAT	7.9
11:35776195-35776396	site	dyads_test_vs_ctrl_m2	D	-97	-72	ATTCGGAAATACTTGACTTCTAATGT	7.8
11:51600873-51601074	site	dyads_test_vs_ctrl_m2	D	-17	8	CTTACAATACATTAGATTCCCAAAAG	9.3
11:75765378-75765579	site	dyads_test_vs_ctrl_m2	D	47	72	CATGGAATTAACATTAAACTTAAATA	7.7
11:77542455-77542656	site	dyads_test_vs_ctrl_m2	D	60	85	TATCTTGGATAGTTTAGATTTAAATG	7.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m2	D	54	79	TATACAAATATATATATATATATACA	11.0
11:77709708-77709909	site	dyads_test_vs_ctrl_m2	D	62	87	TATATATATATATATACATATATATA	7.8
11:77709708-77709909	site	dyads_test_vs_ctrl_m2	R	62	87	TATATATATGTATATATATATATATA	7.7
11:77709708-77709909	site	dyads_test_vs_ctrl_m2	D	64	89	TATATATATATATACATATATATATA	7.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m2	R	64	89	TATATATATATGTATATATATATATA	7.8
11:78272016-78272217	site	dyads_test_vs_ctrl_m2	R	5	30	ATTTCAATGTTTTTGCGTTCCAAAGA	7.8
11:88083427-88083628	site	dyads_test_vs_ctrl_m2	R	44	69	GTTCCTAAGCTTTTTATATACAAAAG	8.0
11:93945469-93945670	site	dyads_test_vs_ctrl_m2	R	-21	4	ATTCCATACATTTTTACACTAAAAAG	8.7
11:98185572-98185773	site	dyads_test_vs_ctrl_m2	R	-69	-44	TCTCCAGTTCTCCTTGGTCTGTAACA	7.8
12:24493230-24493431	site	dyads_test_vs_ctrl_m2	D	51	76	TTTTCAATATCATTAGCTTTAAAAGA	8.9
12:31007094-31007295	site	dyads_test_vs_ctrl_m2	D	-100	-75	AGTGCAGTAAACGTAGATTTAAAGCA	7.6
12:54645957-54646158	site	dyads_test_vs_ctrl_m2	D	-4	21	CAACTAATGACCTTAGGTTTTAAAAA	7.6
12:55095822-55096023	site	dyads_test_vs_ctrl_m2	D	12	37	AGTCATGTGGAATATATATTTATATA	8.9
12:65043759-65043960	site	dyads_test_vs_ctrl_m2	D	42	67	ATTCCAGTAATTAGTATTTCTAAGGT	7.9
12:67037108-67037309	site	dyads_test_vs_ctrl_m2	R	-53	-28	ATTAAAAATATTTACGTTTCTACAGT	7.5
12:80108385-80108586	site	dyads_test_vs_ctrl_m2	R	-62	-37	TATCAAAACGTATTTATTGCCAAACT	7.6
12:108815790-108815991	site	dyads_test_vs_ctrl_m2	R	-86	-61	CATCTTATTAAAGTATTTTTTAAATT	7.9
13:15119277-15119478	site	dyads_test_vs_ctrl_m2	R	-30	-5	GATTTTGAAAACTAATAACTTAAAAC	7.7
13:17882287-17882488	site	dyads_test_vs_ctrl_m2	R	-70	-45	CATACTAATAAATATAATTTATAAGC	9.1
13:49494187-49494388	site	dyads_test_vs_ctrl_m2	R	-73	-48	ATTCCATAAGTCTAAGAATTTAAATC	9.4
13:69655081-69655282	site	dyads_test_vs_ctrl_m2	D	-17	8	ATTACGATTTTGAATAGTTTGAAATA	8.7
14:13903319-13903520	site	dyads_test_vs_ctrl_m2	D	23	48	AGTCCTAGTTTATTTTTATTAAAACA	9.6
14:31700030-31700231	site	dyads_test_vs_ctrl_m2	R	-87	-62	ATTCCTGTATATTTTAGAGTATAATA	8.3
14:47736218-47736419	site	dyads_test_vs_ctrl_m2	R	-19	6	TATTCAAACAGTTTTATTATAAAACT	7.7
14:47736218-47736419	site	dyads_test_vs_ctrl_m2	R	-3	22	AATGTAAAGGTCTAATTATTCAAACA	8.5
14:56927397-56927598	site	dyads_test_vs_ctrl_m2	R	65	90	CATAAAGATATCTAAAGACTAAAATA	10.2
14:66967885-66968086	site	dyads_test_vs_ctrl_m2	R	-45	-20	TGTTCAATGCTGATATCTTCGAAAAT	7.6
14:73796932-73797133	site	dyads_test_vs_ctrl_m2	D	-14	11	TCTCCAGTTCTCCTTGGTCTGTAACA	7.8
14:73955269-73955470	site	dyads_test_vs_ctrl_m2	D	70	95	GGTCCAGTACTTTTTCTACCACAAAT	9.2
14:122158883-122159084	site	dyads_test_vs_ctrl_m2	R	-33	-8	TTACAAATGCACATAATATTTAAATC	8.0
15:8358915-8359116	site	dyads_test_vs_ctrl_m2	D	-77	-52	TGTCCTGGATACTGCACATTAAAAGG	7.5
15:35814959-35815160	site	dyads_test_vs_ctrl_m2	D	1	26	TATCCAGACTTGTATAAATCAGTAAT	8.2
15:36595862-36596063	site	dyads_test_vs_ctrl_m2	R	-63	-38	AGTCCTAGATTACTTGATTTAAAACA	7.6
15:50776550-50776751	site	dyads_test_vs_ctrl_m2	R	-78	-53	AGTCCGGAATATCAAACACCATAAGT	8.2
15:63931176-63931377	site	dyads_test_vs_ctrl_m2	D	-1	24	AATATTAAATATTAGTTTTCAAAAAA	7.6
15:83405149-83405350	site	dyads_test_vs_ctrl_m2	D	-86	-61	TATTTAATACAGTATCTATTCTAAAA	7.7
15:87473797-87473998	site	dyads_test_vs_ctrl_m2	R	-65	-40	GATCCAATTATCTAATCTCTAATTCA	8.5
16:23110746-23110947	site	dyads_test_vs_ctrl_m2	D	70	95	GATTCGGTGCAATAAGTATTTAGACC	7.8
16:38245133-38245334	site	dyads_test_vs_ctrl_m2	R	71	96	TCCACAAAAAAGTTTATATTTAAAAT	7.8
16:54120008-54120209	site	dyads_test_vs_ctrl_m2	R	-82	-57	CCTCCAGTCTATATATTTTTTTAATC	8.9
17:21284007-21284208	site	dyads_test_vs_ctrl_m2	D	-2	23	GATTTTGAAAACTAATAACTTAAAAC	7.7
17:83425037-83425238	site	dyads_test_vs_ctrl_m2	R	-38	-13	ATTAATAAAGAATTAATTTTTAAAAA	7.6
18:36290118-36290319	site	dyads_test_vs_ctrl_m2	R	-41	-16	TTTACGGTCACCTCATATTTAACATT	8.3
18:42071288-42071489	site	dyads_test_vs_ctrl_m2	D	-61	-36	TGTCCTGTTCTTTTATTATTATTATT	8.1
18:43477184-43477385	site	dyads_test_vs_ctrl_m2	D	19	44	TAAACGGTATTATTAACACCAAAAGT	9.0
18:79856329-79856530	site	dyads_test_vs_ctrl_m2	R	-26	-1	TGTCTAATTCTTTATTAATTTAAAAT	10.3
18:79856329-79856530	site	dyads_test_vs_ctrl_m2	R	56	81	GATGTAATTATAATTTGATTAAAATA	7.9
19:21280422-21280623	site	dyads_test_vs_ctrl_m2	D	33	58	AATCCAGAGAATATAAAATTACTACA	7.6
19:40560570-40560771	site	dyads_test_vs_ctrl_m2	R	-79	-54	TATCTGGAGAAGTACCGTCCGAAAAT	10.0
2:22554307-22554508	site	dyads_test_vs_ctrl_m2	R	-45	-20	GCCACAGTTATGTTTATATCTAAACC	8.2
2:24593420-24593621	site	dyads_test_vs_ctrl_m2	D	40	65	AATTCAGTATCAATAGATTCCAAATC	7.6
2:39197180-39197381	site	dyads_test_vs_ctrl_m2	D	-82	-57	AATTTAGATAATTTAAAATTAAAAAA	9.0
2:78920155-78920356	site	dyads_test_vs_ctrl_m2	D	-17	8	GCTGTAGATTAGTTATGTTTAAAATG	7.8
2:109724142-109724343	site	dyads_test_vs_ctrl_m2	R	-50	-25	TACCCTGTTATGTATATATACAAATA	9.1
2:122011897-122012098	site	dyads_test_vs_ctrl_m2	R	20	45	TTTCCAATACTGTACTTTCTTAACAA	9.0
2:130837654-130837855	site	dyads_test_vs_ctrl_m2	D	-21	4	TTTAAAATACAATTCTTTTTAAAATT	8.2
2:155390752-155390953	site	dyads_test_vs_ctrl_m2	D	-92	-67	CATCCAAAACACTATATAATAAAATT	11.0
2:170463506-170463707	site	dyads_test_vs_ctrl_m2	R	-23	2	ATTGCTGATAATCATACTCCGAAAGA	7.5
3:75517357-75517558	site	dyads_test_vs_ctrl_m2	D	0	25	TTTACAGATAAATGCAGTTTAATACT	7.6
3:103354917-103355118	site	dyads_test_vs_ctrl_m2	D	-1	24	TATTGAAATATCAAAATACTGAAATA	7.8
3:116631307-116631508	site	dyads_test_vs_ctrl_m2	D	-80	-55	TTTACAAAGTAACACTTTTTTAAATA	9.1
3:116631307-116631508	site	dyads_test_vs_ctrl_m2	R	-67	-42	TGTCCAGTTATATTATTTAAAAAAGT	7.8
4:11960810-11961011	site	dyads_test_vs_ctrl_m2	D	-40	-15	ATACCAGTTAAGTATTCACCCACAAT	7.6
4:44123859-44124060	site	dyads_test_vs_ctrl_m2	D	-32	-7	GATCATGTTCATTATAATCTCAAAGG	7.8
4:79327824-79328025	site	dyads_test_vs_ctrl_m2	R	29	54	TCTCCAGTTCTCCTTGGTCTGTAACA	7.8
4:95050997-95051198	site	dyads_test_vs_ctrl_m2	R	69	94	GCTACAGTAACCCTAAGATCCTAAAA	7.5
4:119137131-119137332	site	dyads_test_vs_ctrl_m2	R	0	25	TGTCCAGATATACTATAACTTAGTGT	7.7
4:129899341-129899542	site	dyads_test_vs_ctrl_m2	D	56	81	TTTGCGGATGCACATCGACCTAAACT	7.6
4:135867227-135867428	site	dyads_test_vs_ctrl_m2	R	10	35	TGTCCTAAAATGCTTACTTTCAAACT	8.2
4:136339831-136340032	site	dyads_test_vs_ctrl_m2	D	-61	-36	ATTCCAAACGTCGTCAGACCAACAAC	8.8
5:13526296-13526497	site	dyads_test_vs_ctrl_m2	R	10	35	TTTCATATATTTTAATTTTTTAAATG	9.1
5:22486759-22486960	site	dyads_test_vs_ctrl_m2	R	20	45	AATGATGTTATCTTAACACTGAAATT	7.5
5:43286854-43287055	site	dyads_test_vs_ctrl_m2	R	-24	1	CATCCAGTCTGCATAAAATCGAATTC	7.7
5:44406182-44406383	site	dyads_test_vs_ctrl_m2	D	-61	-36	ATTCTAAGTCACTTTTATTTCCAATA	7.7
5:106617408-106617609	site	dyads_test_vs_ctrl_m2	D	-95	-70	AATAAAGAACATTAGATTTTTAAAAT	8.5
5:129982605-129982806	site	dyads_test_vs_ctrl_m2	R	47	72	TATTTAATACAGTATCTATTCTAAAA	7.7
5:142529109-142529310	site	dyads_test_vs_ctrl_m2	D	75	100	CTTCTTATGCACCTAATATCTAAATT	8.9
6:8215473-8215674	site	dyads_test_vs_ctrl_m2	R	-22	3	TCTCAAATTTTCTAAGATCCCATATT	7.5
6:27230894-27231095	site	dyads_test_vs_ctrl_m2	R	49	74	GGTCCAATAAATTACGGATTCACAAA	9.4
6:31475433-31475634	site	dyads_test_vs_ctrl_m2	D	-45	-20	TGTCCTATAGTTTATAGTTTATATTA	8.8
6:31475433-31475634	site	dyads_test_vs_ctrl_m2	R	-26	-1	TCTACATTACTCTTAATATTAATATA	9.6
6:39142630-39142831	site	dyads_test_vs_ctrl_m2	D	75	100	CTTCCAAATAAATAGCTTTAAAAAAA	8.3
6:44792892-44793093	site	dyads_test_vs_ctrl_m2	R	-92	-67	TATCCAATAATTTTGTATTTTAGTTA	9.0
6:67284021-67284222	site	dyads_test_vs_ctrl_m2	D	-94	-69	ATCCCAAACAACTAAGAATTAAAAAA	9.0
6:67284021-67284222	site	dyads_test_vs_ctrl_m2	R	-8	17	TAGCTAGAGAAGTTCGTTTTCAAAAC	7.7
6:134541666-134541867	site	dyads_test_vs_ctrl_m2	D	-28	-3	ACTTCAATACGATTAGTTTCAGAATC	7.5
6:134925209-134925410	site	dyads_test_vs_ctrl_m2	D	-43	-18	TATACTAACTTATTTATGTTAAAAAG	7.8
7:13179821-13180022	site	dyads_test_vs_ctrl_m2	R	-98	-73	CTTCCAGATGTCAAACGTTTACAAAG	8.5
7:84615563-84615764	site	dyads_test_vs_ctrl_m2	D	60	85	GATACGGTGCTCTACATTCCCAAGGA	8.2
7:90445937-90446138	site	dyads_test_vs_ctrl_m2	R	-25	0	TATACAAAGAAATATATACAAAAATG	8.8
7:128442287-128442488	site	dyads_test_vs_ctrl_m2	D	22	47	GTTCCAAACATTTCAATTTTTAAAAT	9.0
7:128446639-128446840	site	dyads_test_vs_ctrl_m2	R	-66	-41	TTTTCAATTTTTTAATATTTCATATA	8.5
8:22580329-22580530	site	dyads_test_vs_ctrl_m2	D	54	79	GGTCCAGAAAAATCTATATCAACATT	7.8
8:52196270-52196471	site	dyads_test_vs_ctrl_m2	R	3	28	TTTACAGATATCTGTAAACTATTACA	7.6
8:90247387-90247588	site	dyads_test_vs_ctrl_m2	D	5	30	AATACAGTGTTTTTATTTTCCCAAAC	7.9
8:95825606-95825807	site	dyads_test_vs_ctrl_m2	R	-10	15	TATCCAGGTCTTTTAAGATCCATAAA	8.8
8:102633596-102633797	site	dyads_test_vs_ctrl_m2	D	-76	-51	TATACTAAAATAAGAACTTTAAAATT	7.7
9:3022432-3022633	site	dyads_test_vs_ctrl_m2	D	-53	-28	CGTCCTATAGTGGACATTTCTAAATT	9.2
9:25308163-25308364	site	dyads_test_vs_ctrl_m2	R	-56	-31	TATCTAAATTAAATGTTATTACAAAA	8.0
9:88451352-88451553	site	dyads_test_vs_ctrl_m2	D	51	76	TCTACAGAAATTTAAGTTTTAAAATA	10.9
9:120960296-120960497	site	dyads_test_vs_ctrl_m2	D	6	31	ATACCAGTTGCCTTTTATCCCAAAGT	8.9
X:13521794-13521995	site	dyads_test_vs_ctrl_m2	D	-12	13	TTTCCAAAAATATAACATTCCAAAGG	9.9
X:15366229-15366430	site	dyads_test_vs_ctrl_m2	R	-90	-65	AAACCAGACCTCCACTTTCTAAAAAT	7.9
X:51004277-51004478	site	dyads_test_vs_ctrl_m2	D	-87	-62	AATACAGATATCTATTTTATTAAAAA	10.5
X:51005059-51005260	site	dyads_test_vs_ctrl_m2	D	-81	-56	AATCAAATGCAACACGATTTAAAAAA	7.7
X:68717160-68717361	site	dyads_test_vs_ctrl_m2	R	-41	-16	TTTCAAATACTATACATTCCCAGAAT	7.8
X:106992710-106992911	site	dyads_test_vs_ctrl_m2	R	-6	19	TATACTGTAAAAATTAATTTACAAAA	7.8
X:153501184-153501385	site	dyads_test_vs_ctrl_m2	R	-76	-51	TGTACAATTTAATGTATACTTAGAGA	7.8
;
; Matrices
;	matrix	name                 	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	dyads_test_vs_ctrl_m2	26	4	0	-26.800	14.100	40.900	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                 	matches	scored
;	1	dyads_test_vs_ctrl_m2	133	0
;		TOTAL          	133	0
; Host name	rsat
; Job started	2025-09-18.095854
; Job done	2025-09-18.095855
; Seconds	0.26
;	user	0.26
;	system	0.02
;	cuser	0.08
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:8056450-8056651	site	dyads_test_vs_ctrl_m3	D	-22	7	ATCCATCAAAATTATGTATCATACAAACTG	8.4
1:8791917-8792118	site	dyads_test_vs_ctrl_m3	R	61	90	TACCGGCATGTCATGTTACCCAGAGAACTC	7.6
1:9746119-9746320	site	dyads_test_vs_ctrl_m3	R	-65	-36	ATCCGGACGATTACACTCCTGTAAATATAG	8.7
1:19153043-19153244	site	dyads_test_vs_ctrl_m3	D	-4	25	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
1:21511981-21512182	site	dyads_test_vs_ctrl_m3	R	21	50	AAGCATTTGTTATTGATGCTGTAAGAACTA	8.0
1:24613180-24613381	site	dyads_test_vs_ctrl_m3	R	22	51	TTCCTTATTGTTTGCCTACTACGACAACTA	8.4
1:55760127-55760328	site	dyads_test_vs_ctrl_m3	R	2	31	CTAAATCGTACCCTTATACTCTCAGATAAG	7.9
1:55760127-55760328	site	dyads_test_vs_ctrl_m3	R	24	53	CACCGTAACTCCTTACTACATTCTAAATCG	9.6
1:60692064-60692265	site	dyads_test_vs_ctrl_m3	R	-66	-37	CGCCAGAAGTTCTTTTATCCTTGAGAAGAC	8.1
1:95026280-95026481	site	dyads_test_vs_ctrl_m3	D	-3	26	GTCCAGCTTCGTTTATTTCATTAGATATTT	8.1
1:162671906-162672107	site	dyads_test_vs_ctrl_m3	D	8	37	ATATATATGTATATATATTTATATTTATAT	7.8
1:162671906-162672107	site	dyads_test_vs_ctrl_m3	D	10	39	ATATATGTATATATATTTATATTTATATAA	7.9
1:162671906-162672107	site	dyads_test_vs_ctrl_m3	R	10	39	TTATATAAATATAAATATATATACATATAT	8.3
1:162671906-162672107	site	dyads_test_vs_ctrl_m3	D	14	43	ATGTATATATATTTATATTTATATAAAAAG	7.8
1:162671906-162672107	site	dyads_test_vs_ctrl_m3	D	16	45	GTATATATATTTATATTTATATAAAAAGAC	11.7
1:164437163-164437364	site	dyads_test_vs_ctrl_m3	R	67	96	GTACAATTTTATTTTTTTCTGCAAGAAAAA	8.4
1:165866197-165866398	site	dyads_test_vs_ctrl_m3	R	7	36	CTGCAGAACCTTAGACTTGTGTACTAAGTA	7.8
1:172668785-172668986	site	dyads_test_vs_ctrl_m3	D	-22	7	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
1:172668785-172668986	site	dyads_test_vs_ctrl_m3	D	54	83	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
1:180802598-180802799	site	dyads_test_vs_ctrl_m3	R	-45	-16	TTCCATCCATTCACTATACTTTTCTAACTG	9.8
10:20325356-20325557	site	dyads_test_vs_ctrl_m3	R	18	47	GTTTATAATTTTTTTCTTCTCTAAATCCAT	8.0
10:40566180-40566381	site	dyads_test_vs_ctrl_m3	D	-57	-28	CTGCAGTCTGATCTGATTCTGTATTATCAA	7.7
10:58465078-58465279	site	dyads_test_vs_ctrl_m3	R	-27	2	TTCAGGAATACTATTCTTCTTTCTGATCAT	7.8
10:69019628-69019829	site	dyads_test_vs_ctrl_m3	D	-35	-6	CTACAGTGTACTTAGATATAATAATAAATA	8.2
10:85313742-85313943	site	dyads_test_vs_ctrl_m3	R	-79	-50	ACCTATATGAGCATCGATCTCTACAATCTT	7.9
10:99023572-99023773	site	dyads_test_vs_ctrl_m3	D	-100	-71	GTAGATACTTTTTTTGTTCTTCATAGACGG	7.5
10:108278716-108278917	site	dyads_test_vs_ctrl_m3	R	-68	-39	ATACAGTCAGCTACTATACGCTTTAAATGT	7.5
10:117815440-117815641	site	dyads_test_vs_ctrl_m3	D	-43	-14	ATACAGTACACCATTTTCATACATGTACAA	7.7
10:117815440-117815641	site	dyads_test_vs_ctrl_m3	R	60	89	CACGAGAGATTTTTACTTATATAATAGTTC	7.9
10:120923653-120923854	site	dyads_test_vs_ctrl_m3	D	29	58	ATACAGAAAGATTGGTTACTTTATATATTA	10.8
10:120923653-120923854	site	dyads_test_vs_ctrl_m3	R	45	74	TTAAAATATATATATATAATATATAAAGTA	7.8
10:122591143-122591344	site	dyads_test_vs_ctrl_m3	R	53	82	ATACATACATATATAATACATACACACACA	7.6
10:122591143-122591344	site	dyads_test_vs_ctrl_m3	R	61	90	ATTCATACATACATACATATATAATACATA	9.0
11:30099526-30099727	site	dyads_test_vs_ctrl_m3	R	-89	-60	TAACAAATTTTCATCTTACTGCACAATCAA	7.7
11:41142429-41142630	site	dyads_test_vs_ctrl_m3	R	-63	-34	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
11:41142429-41142630	site	dyads_test_vs_ctrl_m3	R	13	42	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
11:46243313-46243514	site	dyads_test_vs_ctrl_m3	D	-14	15	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
11:46243313-46243514	site	dyads_test_vs_ctrl_m3	D	62	91	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
11:53420947-53421148	site	dyads_test_vs_ctrl_m3	D	-58	-29	CCACATCTGTATAGTATATTATATGTATTT	7.6
11:53420947-53421148	site	dyads_test_vs_ctrl_m3	R	-56	-27	CAAAATACATATAATATACTATACAGATGT	8.9
11:69998373-69998574	site	dyads_test_vs_ctrl_m3	D	-94	-65	CCCCGTCGGACCTTCGAACTATCCAGACTT	8.4
11:75765378-75765579	site	dyads_test_vs_ctrl_m3	D	14	43	GTACAGATCTGTATTGTTCTTACTGAAACA	8.6
11:77529243-77529444	site	dyads_test_vs_ctrl_m3	D	-32	-3	ATACAATTAATACAGGTTATATACGAACTA	9.1
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	45	74	ATATATATATATATTTGTATATATTATCCT	7.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	47	76	ATATATATATATATATTTGTATATATTATC	8.5
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	49	78	GTATATATATATATATATTTGTATATATTA	9.6
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	51	80	ATATATACAAATATATATATATATATACAT	10.2
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	51	80	ATGTATATATATATATATATTTGTATATAT	8.1
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	53	82	ATATACAAATATATATATATATATACATAT	8.4
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	55	84	ATACAAATATATATATATATATACATATAT	10.7
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	59	88	ATATATATATGTATATATATATATATATTT	8.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	61	90	ATATATATATATATATACATATATATATAT	8.3
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	61	90	ATATATATATATGTATATATATATATATAT	9.4
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	63	92	ATATATATATATATACATATATATATATAG	9.8
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	63	92	CTATATATATATATGTATATATATATATAT	10.0
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	65	94	ATATATATATATACATATATATATATAGTT	8.2
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	65	94	AACTATATATATATATGTATATATATATAT	9.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	67	96	ATATATATATACATATATATATATAGTTAT	7.7
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	71	100	TTAAATAACTATATATATATATGTATATAT	8.4
11:78696611-78696812	site	dyads_test_vs_ctrl_m3	D	5	34	TTCCATTCCCACATCCTTTTCTAAACACCT	8.1
11:85191658-85191859	site	dyads_test_vs_ctrl_m3	R	16	45	TTCGAGTATCACAACGTTCTGTCTAACTGG	7.8
11:86707074-86707275	site	dyads_test_vs_ctrl_m3	D	-18	11	ATCCAGGCGGTTAATATACTCCATAACACG	8.2
11:88049473-88049674	site	dyads_test_vs_ctrl_m3	D	69	98	ATACAGTTTTCCTTTACTCAGTACAATCTT	7.9
11:88083427-88083628	site	dyads_test_vs_ctrl_m3	R	-20	9	ATTTATAAAATTATTTTACACTAGGTACTA	7.7
11:98624944-98625145	site	dyads_test_vs_ctrl_m3	D	-69	-40	AAACAAAACTTTAATTTCCTGTACATACTC	7.6
11:98800007-98800208	site	dyads_test_vs_ctrl_m3	R	-97	-68	TAACAGGAGTCTTTCTTTCTGTATTTCCAA	7.6
12:8750134-8750335	site	dyads_test_vs_ctrl_m3	R	-83	-54	CTATAATTCTATATACATCTCTATAAACCT	9.0
12:26150409-26150610	site	dyads_test_vs_ctrl_m3	R	-73	-44	TTCCAGGGTCCTTCTCTTCTTTAGGAATTT	7.7
12:55095822-55096023	site	dyads_test_vs_ctrl_m3	R	25	54	TAAAATAAAACTCTATTTATATAAATATAT	8.7
12:82317882-82318083	site	dyads_test_vs_ctrl_m3	R	11	40	ATACAGCTCTCTTAAGTTCTCTATTATAGC	7.8
12:86881263-86881464	site	dyads_test_vs_ctrl_m3	D	44	73	AAACATACGACGAAAATAATGTCTATACAT	8.1
12:100206116-100206317	site	dyads_test_vs_ctrl_m3	R	-34	-5	CGCCATCAATATCTGCTTCTCTGATCATTT	7.9
12:100744724-100744925	site	dyads_test_vs_ctrl_m3	D	35	64	ACCCAGACGCGTTTAGTACTTCTCGATGAT	8.9
12:101058379-101058580	site	dyads_test_vs_ctrl_m3	R	-54	-25	CATCAGACATACAGAGTTCAGTATATACAA	8.7
13:9686159-9686360	site	dyads_test_vs_ctrl_m3	D	-58	-29	ATTTAAATATTCATTTTTCTCTAAGATCCA	7.6
13:66008519-66008720	site	dyads_test_vs_ctrl_m3	D	-2	27	TTCCATTGTTTTATATGATTTTCCTAACAA	7.7
13:107726003-107726204	site	dyads_test_vs_ctrl_m3	R	-76	-47	AAACAGAACACCTCCATCCTGTGATAAGTA	7.8
13:111361685-111361886	site	dyads_test_vs_ctrl_m3	R	-64	-35	CAACAGCAATATAACGTTCTGGAGCTACTA	7.9
13:111361685-111361886	site	dyads_test_vs_ctrl_m3	D	-58	-29	CTCCAGAACGTTATATTGCTGTTGGAATAT	8.7
14:13903319-13903520	site	dyads_test_vs_ctrl_m3	R	-89	-60	ATCTAACTATACTCATTTATATATAAAAAA	8.0
14:31700030-31700231	site	dyads_test_vs_ctrl_m3	D	-98	-69	CGTCTGTGTTTTATTATACTCTAAAATATA	9.0
14:52084144-52084345	site	dyads_test_vs_ctrl_m3	D	-24	5	GCCCACAATTTTGCCATACTTTGAAAAGAT	7.5
14:56959765-56959966	site	dyads_test_vs_ctrl_m3	R	-23	6	TATCATAAATATCTTTTACTAGAAGAACCC	10.7
14:120428892-120429093	site	dyads_test_vs_ctrl_m3	D	-3	26	AATAACTAAACATTGTTACTGTACATATTA	8.4
15:8358915-8359116	site	dyads_test_vs_ctrl_m3	R	17	46	TTACATTAAGACTTTCTCGTGTAAGATCTT	8.4
15:58054541-58054742	site	dyads_test_vs_ctrl_m3	R	-31	-2	ATGAATGTAAATATTGTACTTTTCAAACTC	8.1
15:76150410-76150611	site	dyads_test_vs_ctrl_m3	D	-89	-60	TACCGGCATGTCATGTTACCCAGAGAACTC	7.6
15:87473797-87473998	site	dyads_test_vs_ctrl_m3	R	-36	-7	GTCCATCCGTCCATCCATCTGTCCATCCCC	8.4
15:87473797-87473998	site	dyads_test_vs_ctrl_m3	R	-8	21	ATCCATCCGTCCGTCCGTCCATCCATCCGT	8.0
15:87473797-87473998	site	dyads_test_vs_ctrl_m3	R	-4	25	ATCCATCCATCCGTCCGTCCGTCCATCCAT	7.9
15:87473797-87473998	site	dyads_test_vs_ctrl_m3	R	0	29	ATCCATCCATCCATCCGTCCGTCCGTCCAT	8.5
15:87473797-87473998	site	dyads_test_vs_ctrl_m3	R	4	33	ATCCATCCATCCATCCATCCGTCCGTCCGT	8.3
16:31991021-31991222	site	dyads_test_vs_ctrl_m3	D	-42	-13	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
16:31991021-31991222	site	dyads_test_vs_ctrl_m3	D	34	63	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
16:33497994-33498195	site	dyads_test_vs_ctrl_m3	R	27	56	CTACAGAATATTTATTTTTTTTACTAAAAC	9.1
16:38243318-38243519	site	dyads_test_vs_ctrl_m3	R	-40	-11	GAACAGTAACTTTTTGCTCATTAATAACAG	8.2
16:38245133-38245334	site	dyads_test_vs_ctrl_m3	D	-83	-54	AAACAAAATTTATTATTATTATATATATAT	7.7
16:38245133-38245334	site	dyads_test_vs_ctrl_m3	R	-71	-42	CCACAGTCCTTTATATATATATAATAATAA	10.0
16:38245133-38245334	site	dyads_test_vs_ctrl_m3	R	-69	-40	ACCCACAGTCCTTTATATATATATAATAAT	7.7
16:52250508-52250709	site	dyads_test_vs_ctrl_m3	D	43	72	AAATATATATTCTATATTCTGTGGAAAATA	8.5
16:74197811-74198012	site	dyads_test_vs_ctrl_m3	R	37	66	CTCCAGAATCTCCTAATTCTTATTAAAAAT	7.8
16:76294177-76294378	site	dyads_test_vs_ctrl_m3	D	39	68	AGCCAGCAACGCTTCCTTCTTTACGTTTAA	9.5
16:84955073-84955274	site	dyads_test_vs_ctrl_m3	R	68	97	ACCCATCGGTGTTCATTTATAAAATAACGT	8.8
16:94692004-94692205	site	dyads_test_vs_ctrl_m3	D	-46	-17	ATCCAACATACCAATTTTCTGCTAATACAG	8.2
17:19718003-19718204	site	dyads_test_vs_ctrl_m3	R	-94	-65	ATTAAGTCATCTTATTTACTTTATTAAGAA	9.0
17:23344270-23344471	site	dyads_test_vs_ctrl_m3	R	-66	-37	GTTAAGATAGCATTAAGTCTGTAATAATAT	8.1
17:30395894-30396095	site	dyads_test_vs_ctrl_m3	D	-36	-7	ACCCAGACGCGTGTAGTACTTCTCGATGAT	8.2
17:74702371-74702572	site	dyads_test_vs_ctrl_m3	R	-29	0	TTACATAATTAGTTTCTTACATACAAATAT	7.7
17:82191826-82192027	site	dyads_test_vs_ctrl_m3	D	-56	-27	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
18:34909808-34910009	site	dyads_test_vs_ctrl_m3	D	-63	-34	GCACAGCAGTCTCGGCTACTTTCCGAACAT	11.3
18:35860873-35861074	site	dyads_test_vs_ctrl_m3	R	-5	24	GCCCAGGAAGTCTCGGTACTTTATAGATTC	8.6
18:36288773-36288974	site	dyads_test_vs_ctrl_m3	R	-79	-50	AAACCTACGTACCTTGAACTCTACAAACTT	7.6
18:38464343-38464544	site	dyads_test_vs_ctrl_m3	R	1	30	TTCGATGATTACAGAATTCTGCATTAACTA	8.2
18:46506114-46506315	site	dyads_test_vs_ctrl_m3	D	-70	-41	AAGTAAATCTCTTTTTTTATCTACAAACGT	8.3
18:51811837-51812038	site	dyads_test_vs_ctrl_m3	D	60	89	ATCCATCAATGTAATCCATTATATAAACAA	8.4
18:85848456-85848657	site	dyads_test_vs_ctrl_m3	D	9	38	CGATAGATTTCCATTTTTCGGTAGAGACCA	7.7
19:6592302-6592503	site	dyads_test_vs_ctrl_m3	D	28	57	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
19:14561454-14561655	site	dyads_test_vs_ctrl_m3	D	-35	-6	ACTTATAAAGATATTTTACAGTTAAAACCA	7.7
19:29809764-29809965	site	dyads_test_vs_ctrl_m3	D	-86	-57	TTTCATTAATTTTTCCTTCTGCGATTATAC	8.4
19:40622559-40622760	site	dyads_test_vs_ctrl_m3	R	-79	-50	CTTCACATACTCTTACTATTGTGGTAACTC	8.3
2:15631544-15631745	site	dyads_test_vs_ctrl_m3	R	-55	-26	CACTAAACATGTACTGTTCTTTGAAAATTA	7.7
2:19993021-19993222	site	dyads_test_vs_ctrl_m3	R	-80	-51	CTTCACATACTCTTACTATTGTGGTAACTC	8.3
2:30068968-30069169	site	dyads_test_vs_ctrl_m3	R	-86	-57	TGTTATATTTTTGTTCTACTTTCAAAATTT	7.7
2:37373353-37373554	site	dyads_test_vs_ctrl_m3	D	-6	23	TTCCATACTGACACCAGAATATCAAAACTA	8.1
2:64474632-64474833	site	dyads_test_vs_ctrl_m3	D	-83	-54	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
2:70023480-70023681	site	dyads_test_vs_ctrl_m3	R	-63	-34	ATACATTATACCATGTATATATAGCATCAG	7.6
2:109724142-109724343	site	dyads_test_vs_ctrl_m3	D	-63	-34	AGACAAAATTATCTATTTGTATATATACAT	8.4
2:131322086-131322287	site	dyads_test_vs_ctrl_m3	D	32	61	AGCCAATAATACAACCTTCTATCCGCATAT	9.4
2:147243322-147243523	site	dyads_test_vs_ctrl_m3	R	-88	-59	CCCCTGTAGGCTTATATTATTTAAAAACCT	9.5
2:155226364-155226565	site	dyads_test_vs_ctrl_m3	R	-92	-63	TCAAATATAACTTCTGTATTTTAAAAATAT	7.8
2:155226364-155226565	site	dyads_test_vs_ctrl_m3	R	-20	9	TTCCAGAACTAAACGTTTCTTCCATAAAAA	8.7
2:162908080-162908281	site	dyads_test_vs_ctrl_m3	R	-9	20	CTCCATCTGCCCCTGATTCTTTCCCAGCTA	7.9
3:34069069-34069270	site	dyads_test_vs_ctrl_m3	D	2	31	CGCCAGTCTTACATCGCACTTTCAGTTCCT	8.0
3:94984369-94984570	site	dyads_test_vs_ctrl_m3	D	-37	-8	CTCTATGGCTATTTCATACTTGTATAACTC	7.7
3:116560834-116561035	site	dyads_test_vs_ctrl_m3	D	-81	-52	AAACAAAACTTTAATTTCCTGTACATACTC	7.6
3:119719375-119719576	site	dyads_test_vs_ctrl_m3	D	13	42	AACCATTTTCCAAATCTTAATTACAAACTA	7.6
3:137866511-137866712	site	dyads_test_vs_ctrl_m3	D	-99	-70	TTCCAGTGGACTGTATCTCTGTGAAAAACA	7.5
3:157888666-157888867	site	dyads_test_vs_ctrl_m3	D	1	30	CGCCAGTTTCGCTTAATTTTCACATATCAG	7.9
4:73498188-73498389	site	dyads_test_vs_ctrl_m3	D	-59	-30	TGCCATCCAGTTTGTGTTCTTTCAGATCCA	8.3
4:74228178-74228379	site	dyads_test_vs_ctrl_m3	D	-57	-28	ACCCATACTTCTGGCCTTCTATCCCCACAG	7.5
4:74228178-74228379	site	dyads_test_vs_ctrl_m3	D	51	80	CGCCACCTCACTATCCCACTTTGCTAACTG	9.1
4:74303168-74303369	site	dyads_test_vs_ctrl_m3	D	-12	17	GACCATTAACCATTAATATTTTTGAAACTA	8.7
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	D	-98	-69	CTGAATATATATATATTTATATATGTATAT	9.6
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	D	-96	-67	GAATATATATATATTTATATATGTATATTA	8.1
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	R	-96	-67	TAATATACATATATAAATATATATATATTC	8.0
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	R	-94	-65	TTTAATATACATATATAAATATATATATAT	7.9
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	D	-92	-63	ATATATATATTTATATATGTATATTAAAAA	8.2
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	D	-90	-61	ATATATATTTATATATGTATATTAAAAAAA	7.5
4:106136481-106136682	site	dyads_test_vs_ctrl_m3	R	-88	-59	TTACAGACGTTCTTAATGCTACAAGAGCAG	7.9
4:119278109-119278310	site	dyads_test_vs_ctrl_m3	D	-64	-35	GGCCTTTTTTTTTTTTTTCTTAAAAAACAC	8.2
4:129715921-129716122	site	dyads_test_vs_ctrl_m3	R	57	86	ATCCATATGGACGTTATTAAAAACAAACAG	8.2
4:146277742-146277943	site	dyads_test_vs_ctrl_m3	R	56	85	ATACAGTGTATCTATGTACTATATGTGCCC	8.4
5:13526296-13526497	site	dyads_test_vs_ctrl_m3	R	-64	-35	AAACATATTATTGGTATTATTATAAAACTA	8.3
5:29833047-29833248	site	dyads_test_vs_ctrl_m3	D	24	53	GGACAATATTCTGTCTTTCTTTCCGATCCC	8.8
5:76232688-76232889	site	dyads_test_vs_ctrl_m3	D	-5	24	GACCACTTATCTTTCAAAATATCTAAACAT	8.6
5:92187897-92188098	site	dyads_test_vs_ctrl_m3	R	-12	17	GCTAATAAATCCTAGTTTCTCTATGAAATT	7.9
5:108085485-108085686	site	dyads_test_vs_ctrl_m3	D	-36	-7	AGTAACACTTTTGTGTTACTATAAAAAATT	8.1
5:110117765-110117966	site	dyads_test_vs_ctrl_m3	D	-89	-60	CACCACTATTACTATGTCCTATCATAACAT	11.7
5:149048501-149048702	site	dyads_test_vs_ctrl_m3	D	-35	-6	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
5:149048501-149048702	site	dyads_test_vs_ctrl_m3	D	41	70	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
6:16238269-16238470	site	dyads_test_vs_ctrl_m3	R	-64	-35	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
6:16238269-16238470	site	dyads_test_vs_ctrl_m3	R	52	81	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
6:31475433-31475634	site	dyads_test_vs_ctrl_m3	R	-31	-2	CTACATTACTCTTAATATTAATATAAACTA	8.7
6:31475433-31475634	site	dyads_test_vs_ctrl_m3	R	-21	8	CTCTAGCCCTCTACATTACTCTTAATATTA	8.4
6:83362600-83362801	site	dyads_test_vs_ctrl_m3	D	-45	-16	CAGCATAAATTTACTGTACTAAGATATCTA	8.9
6:98061195-98061396	site	dyads_test_vs_ctrl_m3	D	-29	0	GTTCATCTTTCTATATATCTCCCCAAAACG	8.0
6:113153052-113153253	site	dyads_test_vs_ctrl_m3	R	-48	-19	TTACATACGTTTTATATAATATACAAAGAA	11.4
6:116174085-116174286	site	dyads_test_vs_ctrl_m3	D	3	32	TTCCAGTGGACTGTATCTCTGTGAAAAACA	7.5
6:142970384-142970585	site	dyads_test_vs_ctrl_m3	D	-5	24	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
7:90208138-90208339	site	dyads_test_vs_ctrl_m3	D	-98	-69	TTACATAACATTAATATTATATCAGACCTC	9.8
7:96202699-96202900	site	dyads_test_vs_ctrl_m3	D	-74	-45	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
7:96202699-96202900	site	dyads_test_vs_ctrl_m3	D	2	31	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
7:99090278-99090479	site	dyads_test_vs_ctrl_m3	R	59	88	ATGTAGGTTTTCATTTTTCTTTTATAACGA	8.7
7:111072120-111072321	site	dyads_test_vs_ctrl_m3	D	32	61	TTACAGTTAAGAATTTTTCTGTAACAACCA	9.7
8:3995673-3995874	site	dyads_test_vs_ctrl_m3	R	68	97	CTTCAGCTGTTTTCTGTATTCTACAAACAT	8.5
8:61363928-61364129	site	dyads_test_vs_ctrl_m3	D	2	31	TCGCTTTTCCCCATATTTCTTTGTAAACTC	8.6
8:126981352-126981553	site	dyads_test_vs_ctrl_m3	D	-31	-2	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
8:126981352-126981553	site	dyads_test_vs_ctrl_m3	D	45	74	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
9:57128069-57128270	site	dyads_test_vs_ctrl_m3	R	-51	-22	GCACATCAAAGCATATTTCTTTAATAAAAA	9.7
9:72430772-72430973	site	dyads_test_vs_ctrl_m3	D	37	66	CTAAAGACACATTTGGTAGTGTGTTAACTA	7.8
9:81677768-81677969	site	dyads_test_vs_ctrl_m3	R	-67	-38	TGTTATATTTTTGTTCTACTTTCAAAATTT	7.7
9:109363602-109363803	site	dyads_test_vs_ctrl_m3	R	-38	-9	ATCCATCAATGTAATCCATTATATAAACAA	8.4
X:3084861-3085062	site	dyads_test_vs_ctrl_m3	R	70	99	ATCCATCAGCATAATCCACTATATAAACAA	10.7
X:13156341-13156542	site	dyads_test_vs_ctrl_m3	D	56	85	TGGAATGCATATATACTTTTTTATGAACGA	7.6
X:13156341-13156542	site	dyads_test_vs_ctrl_m3	D	60	89	ATGCATATATACTTTTTTATGAACGAATGG	8.7
X:51004277-51004478	site	dyads_test_vs_ctrl_m3	D	-86	-57	ATACAGATATCTATTTTATTAAAAAAGTTA	9.4
;
; Matrices
;	matrix	name                 	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	dyads_test_vs_ctrl_m3	30	4	0	-24.500	17.200	41.700	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                 	matches	scored
;	1	dyads_test_vs_ctrl_m3	186	0
;		TOTAL          	186	0
; Host name	rsat
; Job started	2025-09-18.095855
; Job done	2025-09-18.095856
; Seconds	0.27
;	user	0.27
;	system	0.01
;	cuser	0.11
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:8056450-8056651	site	dyads_test_vs_ctrl_m4	D	-82	-55	ACGCATGTTATCTTTAATGTATAAAAAT	7.9
1:8056450-8056651	site	dyads_test_vs_ctrl_m4	R	-73	-46	TGGAATTATATTTTTATACATTAAAGAT	7.9
1:19153043-19153244	site	dyads_test_vs_ctrl_m4	D	72	99	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
1:54996983-54997184	site	dyads_test_vs_ctrl_m4	D	-88	-61	TGGTAGAATAGATTACCTCTTGACAAGT	7.5
1:55000254-55000455	site	dyads_test_vs_ctrl_m4	D	68	95	CACCTAATTTTCATAATACAATCCAAAT	7.7
1:55152813-55153014	site	dyads_test_vs_ctrl_m4	D	-22	5	CCATATTATAGCTTATTTGTTTAGTATA	8.1
1:55760127-55760328	site	dyads_test_vs_ctrl_m4	R	4	31	CTAAATCGTACCCTTATACTCTCAGATA	8.5
1:63165051-63165252	site	dyads_test_vs_ctrl_m4	D	-41	-14	TTATAGATTTTCTTTTTACAGTTAACAT	7.9
1:71294884-71295085	site	dyads_test_vs_ctrl_m4	R	-58	-31	CTCAAGTTTGGCAATATTCTTCCCAAGA	8.3
1:72004272-72004473	site	dyads_test_vs_ctrl_m4	R	-9	18	TTGTAGATTCGCATGTATGTGGCCAAAG	7.9
1:86352461-86352662	site	dyads_test_vs_ctrl_m4	R	25	52	TTTAAGTAACCTTTCCTACAGTGCAACA	7.9
1:93431308-93431509	site	dyads_test_vs_ctrl_m4	D	38	65	TTGCAGTTTCTCTCCGTTTTTGCCAATA	9.3
1:95026280-95026481	site	dyads_test_vs_ctrl_m4	D	-3	24	GTCCAGCTTCGTTTATTTCATTAGATAT	8.3
1:108460137-108460338	site	dyads_test_vs_ctrl_m4	R	-77	-50	AAGGAAAATTATTTTTTTCTACAAAATT	8.3
1:108460137-108460338	site	dyads_test_vs_ctrl_m4	R	-11	16	ATATAGTATTGTTTTATACTTAAAATTA	11.5
1:108460137-108460338	site	dyads_test_vs_ctrl_m4	R	-6	21	TAAAAATATAGTATTGTTTTATACTTAA	8.2
1:146928084-146928285	site	dyads_test_vs_ctrl_m4	D	29	56	AATCATTTTTCGTTAATATTGTTCAACA	8.8
1:149343933-149344134	site	dyads_test_vs_ctrl_m4	R	-68	-41	TTAACTATTATTTTTGTACTTATAAAAA	7.6
1:149343933-149344134	site	dyads_test_vs_ctrl_m4	D	57	84	ATCAAAAATTATATGGTAGTATGCATTA	7.5
1:155097516-155097717	site	dyads_test_vs_ctrl_m4	D	-61	-34	ACGTAAAGTTACATTTTTATACAAAAAT	7.8
1:155097516-155097717	site	dyads_test_vs_ctrl_m4	R	-33	-6	GTACAGTATTTTCTCCTTCTCTGTATTG	8.9
1:162671906-162672107	site	dyads_test_vs_ctrl_m4	R	4	31	ATATAAATATATATACATATATATAATT	8.9
1:162671906-162672107	site	dyads_test_vs_ctrl_m4	D	6	33	TTATATATATGTATATATATTTATATTT	7.8
1:162671906-162672107	site	dyads_test_vs_ctrl_m4	D	10	37	ATATATGTATATATATTTATATTTATAT	8.5
1:162671906-162672107	site	dyads_test_vs_ctrl_m4	R	12	39	TTATATAAATATAAATATATATACATAT	8.0
1:162671906-162672107	site	dyads_test_vs_ctrl_m4	D	14	41	ATGTATATATATTTATATTTATATAAAA	9.7
1:162671906-162672107	site	dyads_test_vs_ctrl_m4	D	16	43	GTATATATATTTATATTTATATAAAAAG	10.4
1:164437163-164437364	site	dyads_test_vs_ctrl_m4	R	71	98	TTGTACAATTTTATTTTTTTCTGCAAGA	8.1
1:172668785-172668986	site	dyads_test_vs_ctrl_m4	D	54	81	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
10:7458743-7458944	site	dyads_test_vs_ctrl_m4	R	-1	26	CTGGGATATCTTTTTCTTCTGTGCAACC	7.7
10:20325356-20325557	site	dyads_test_vs_ctrl_m4	R	20	47	GTTTATAATTTTTTTCTTCTCTAAATCC	8.8
10:21999423-21999624	site	dyads_test_vs_ctrl_m4	R	-62	-35	TTTCAATAGGTTTTAGTTATTAACTATA	7.6
10:39822406-39822607	site	dyads_test_vs_ctrl_m4	R	-80	-53	TCTATTAATAATAATATACTTTATAATG	9.2
10:58465078-58465279	site	dyads_test_vs_ctrl_m4	R	-25	2	TTCAGGAATACTATTCTTCTTTCTGATC	7.9
10:58480024-58480225	site	dyads_test_vs_ctrl_m4	R	-81	-54	TTGTTTATTATCATAATTCTGTAAGATC	7.8
10:69019628-69019829	site	dyads_test_vs_ctrl_m4	R	-26	1	TTTGATTTATTTATTATTATATCTAAGT	8.3
10:85313742-85313943	site	dyads_test_vs_ctrl_m4	R	-77	-50	ACCTATATGAGCATCGATCTCTACAATC	7.9
10:117349231-117349432	site	dyads_test_vs_ctrl_m4	D	-16	11	ATGCAGATTTGCTTTATTCAGATCTATT	8.1
10:117815440-117815641	site	dyads_test_vs_ctrl_m4	D	-94	-67	AGGATTTACATTATTGTACTCTCCAATA	9.4
10:120923653-120923854	site	dyads_test_vs_ctrl_m4	D	29	56	ATACAGAAAGATTGGTTACTTTATATAT	9.1
10:120923653-120923854	site	dyads_test_vs_ctrl_m4	R	47	74	TTAAAATATATATATATAATATATAAAG	9.8
10:120923653-120923854	site	dyads_test_vs_ctrl_m4	D	49	76	TTATATATTATATATATATATTTTAACA	7.7
10:120923653-120923854	site	dyads_test_vs_ctrl_m4	D	51	78	ATATATTATATATATATATTTTAACACA	8.7
11:23489473-23489674	site	dyads_test_vs_ctrl_m4	D	26	53	ATTAAGTTTACTTGTATACGGAACAACC	8.6
11:30099526-30099727	site	dyads_test_vs_ctrl_m4	R	-87	-60	TAACAAATTTTCATCTTACTGCACAATC	9.8
11:41142429-41142630	site	dyads_test_vs_ctrl_m4	R	-61	-34	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
11:46243313-46243514	site	dyads_test_vs_ctrl_m4	D	62	89	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
11:63846556-63846757	site	dyads_test_vs_ctrl_m4	D	-74	-47	ATGTAGGTTTTCATTTCTCTTTCATAAC	7.7
11:65688532-65688733	site	dyads_test_vs_ctrl_m4	D	-77	-50	TTTGATAATTTTTATATACTTTCATATG	9.1
11:74077871-74078072	site	dyads_test_vs_ctrl_m4	D	-67	-40	ATGTAGGTTTTCATTTCTCTTTCATAAT	7.7
11:75765378-75765579	site	dyads_test_vs_ctrl_m4	D	14	41	GTACAGATCTGTATTGTTCTTACTGAAA	8.5
11:77529243-77529444	site	dyads_test_vs_ctrl_m4	D	16	43	AAGAATACTGACAATATACTGTACAATA	10.1
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	29	56	ATATATTATCCTGTGATTCTACTTATGG	7.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	49	76	ATATATATATATATATTTGTATATATTA	10.6
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	51	78	GTATATATATATATATATTTGTATATAT	8.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	53	80	ATGTATATATATATATATATTTGTATAT	8.6
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	D	55	82	ATACAAATATATATATATATATACATAT	10.2
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	59	86	ATATATATGTATATATATATATATATTT	8.7
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	61	88	ATATATATATGTATATATATATATATAT	9.3
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	D	63	90	ATATATATATATATACATATATATATAT	9.2
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	63	90	ATATATATATATGTATATATATATATAT	8.2
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	D	65	92	ATATATATATATACATATATATATATAG	7.7
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	65	92	CTATATATATATATGTATATATATATAT	8.7
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	D	67	94	ATATATATATACATATATATATATAGTT	8.1
11:80395716-80395917	site	dyads_test_vs_ctrl_m4	R	-22	5	ACCAAATTTACTATACTTCACTTCTAAA	7.7
11:85191658-85191859	site	dyads_test_vs_ctrl_m4	R	18	45	TTCGAGTATCACAACGTTCTGTCTAACT	11.0
11:86270155-86270356	site	dyads_test_vs_ctrl_m4	D	-19	8	ACACAGTGAACTTCATTACTGTACATGT	8.1
11:88049473-88049674	site	dyads_test_vs_ctrl_m4	D	69	96	ATACAGTTTTCCTTTACTCAGTACAATC	10.3
11:93945469-93945670	site	dyads_test_vs_ctrl_m4	D	-100	-73	GCACAGGTTTACCTCATTCTATGCAAGA	8.6
11:94292298-94292499	site	dyads_test_vs_ctrl_m4	R	-97	-70	TTGTGTATCCTTTTTGTTCTTTACAAGA	8.2
11:115724571-115724772	site	dyads_test_vs_ctrl_m4	D	33	60	TTGTAGATTCGCATGTATGTGGCCAAAG	7.9
12:3247478-3247679	site	dyads_test_vs_ctrl_m4	R	-86	-59	ATTCGGTTTCATACTCTACTTAACAATT	9.0
12:3249591-3249792	site	dyads_test_vs_ctrl_m4	R	-88	-61	TTGCGGACTATTATAATTTTCTTCAAAC	8.5
12:3249591-3249792	site	dyads_test_vs_ctrl_m4	D	-86	-59	TTGAAGAAAATTATAATAGTCCGCAAGC	7.7
12:8750134-8750335	site	dyads_test_vs_ctrl_m4	R	-81	-54	CTATAATTCTATATACATCTCTATAAAC	8.9
12:14929895-14930096	site	dyads_test_vs_ctrl_m4	R	-3	24	TTATAGTAACCTTTACAACTTTGCCATA	9.0
12:67037108-67037309	site	dyads_test_vs_ctrl_m4	D	-44	-17	ACGTAAATATTTTTAATATTTTATAATC	10.2
12:67511096-67511297	site	dyads_test_vs_ctrl_m4	R	47	74	CTGGGATATCTTTTTCTTCTGTGCAACC	7.7
12:82317882-82318083	site	dyads_test_vs_ctrl_m4	R	-97	-70	ATACAGCTCTCTTGAGTTCTCTATTATA	8.1
12:82317882-82318083	site	dyads_test_vs_ctrl_m4	R	13	40	ATACAGCTCTCTTAAGTTCTCTATTATA	8.7
12:100744724-100744925	site	dyads_test_vs_ctrl_m4	D	35	62	ACCCAGACGCGTTTAGTACTTCTCGATG	8.1
12:108815790-108815991	site	dyads_test_vs_ctrl_m4	R	-95	-68	TTAAAGTATTTTTTAAATTTTTACTACT	8.3
13:9686159-9686360	site	dyads_test_vs_ctrl_m4	R	51	78	ATTGTGTTTTCATTATTTCTTTTCAATA	9.4
13:21192171-21192372	site	dyads_test_vs_ctrl_m4	R	48	75	ATGTAAGAGCCCAATATTCTTTCCCATA	9.0
13:40063550-40063751	site	dyads_test_vs_ctrl_m4	D	-40	-13	ATAAAGATACATTATTTACTTTCCTTCA	7.8
13:51149056-51149257	site	dyads_test_vs_ctrl_m4	D	-42	-15	ATGACGATTTCCATATTTACGTCTACGA	7.7
13:66008519-66008720	site	dyads_test_vs_ctrl_m4	R	63	90	CAGCAGATTTTTTTTTATATATATATAA	9.0
13:67460533-67460734	site	dyads_test_vs_ctrl_m4	R	73	100	GTATAAATCACTTATTTTCCTTCTAATA	7.9
13:69655081-69655282	site	dyads_test_vs_ctrl_m4	R	-10	17	TTAAAGCTATATTTCAAACTATTCAAAA	7.5
13:97099401-97099602	site	dyads_test_vs_ctrl_m4	D	-93	-66	AATAAATATTATCTTATTCTTTACTCTG	7.8
13:107726003-107726204	site	dyads_test_vs_ctrl_m4	R	-1	26	ACATAGCTCTCCTGTTTTCTGTATACGT	7.9
14:16430394-16430595	site	dyads_test_vs_ctrl_m4	R	-100	-73	CTGCAAAATATTTTACTTCTTTCCTAGC	11.9
14:19417204-19417405	site	dyads_test_vs_ctrl_m4	R	67	94	TCTGTGATTTTCATTTTTCTCGCCATAT	7.6
14:20523872-20524073	site	dyads_test_vs_ctrl_m4	R	-80	-53	TATAAGAAGTTTATGTTTCATACGAAAA	8.1
14:31700030-31700231	site	dyads_test_vs_ctrl_m4	D	-98	-71	CGTCTGTGTTTTATTATACTCTAAAATA	10.1
14:56956861-56957062	site	dyads_test_vs_ctrl_m4	D	-34	-7	TTTGAATACCCTATTCTACTTTAACACT	7.7
14:73955269-73955470	site	dyads_test_vs_ctrl_m4	R	-63	-36	TTGAAGCATTTCTTAATTCTCAAAAAGC	8.5
14:98025102-98025303	site	dyads_test_vs_ctrl_m4	D	-25	2	CAGTAACTCCACATCATACTTATCAATA	8.3
14:122158883-122159084	site	dyads_test_vs_ctrl_m4	D	33	60	TTATAGGAGGCCATAATACTGATGAAAG	7.5
15:58054541-58054742	site	dyads_test_vs_ctrl_m4	R	-29	-2	ATGAATGTAAATATTGTACTTTTCAAAC	9.4
15:63931176-63931377	site	dyads_test_vs_ctrl_m4	D	-5	22	AAGCAATATTAAATATTAGTTTTCAAAA	9.6
15:73428306-73428507	site	dyads_test_vs_ctrl_m4	D	-12	15	CTGGGATATCTTTTTCTTCTGTGCAACC	7.7
15:96403283-96403484	site	dyads_test_vs_ctrl_m4	D	-62	-35	TTGTATTATTCTTCCATTCTTAATACTG	8.3
16:11220452-11220653	site	dyads_test_vs_ctrl_m4	D	-21	6	CTGTAGGTTTTCATTATTGTAGGCAATT	8.0
16:15630318-15630519	site	dyads_test_vs_ctrl_m4	D	-71	-44	AAGCAATTTCACACGTTTCTCTGAAAAA	7.8
16:31991021-31991222	site	dyads_test_vs_ctrl_m4	D	34	61	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
16:31991627-31991828	site	dyads_test_vs_ctrl_m4	D	-97	-70	ATGTAGGTTTTCATTTCTCTTTCATAAT	7.7
16:33497994-33498195	site	dyads_test_vs_ctrl_m4	R	29	56	CTACAGAATATTTATTTTTTTTACTAAA	10.7
16:38243318-38243519	site	dyads_test_vs_ctrl_m4	D	-83	-56	TTTAAGTTTTATTGTTTTGTATGTAAAT	7.5
16:38245133-38245334	site	dyads_test_vs_ctrl_m4	D	-83	-56	AAACAAAATTTATTATTATTATATATAT	9.1
16:38245133-38245334	site	dyads_test_vs_ctrl_m4	D	-81	-54	ACAAAATTTATTATTATTATATATATAT	9.7
16:52250508-52250709	site	dyads_test_vs_ctrl_m4	D	43	70	AAATATATATTCTATATTCTGTGGAAAA	8.1
16:74197811-74198012	site	dyads_test_vs_ctrl_m4	R	39	66	CTCCAGAATCTCCTAATTCTTATTAAAA	9.4
16:84955073-84955274	site	dyads_test_vs_ctrl_m4	D	44	71	AAACGGAAGGGTTTGTTTCTTTCCACGT	8.0
16:87371812-87372013	site	dyads_test_vs_ctrl_m4	R	-80	-53	CTGCAGAATACATTCTTCCTCAACAAAT	8.9
17:10206843-10207044	site	dyads_test_vs_ctrl_m4	R	15	42	ATGTATTTTTTGTCTATTCTTTATTATC	7.9
17:26269634-26269835	site	dyads_test_vs_ctrl_m4	D	5	32	GTGCTGCATACTATCCTCCTAGCCAAAT	8.4
17:74702371-74702572	site	dyads_test_vs_ctrl_m4	R	-27	0	TTACATAATTAGTTTCTTACATACAAAT	8.0
17:78375916-78376117	site	dyads_test_vs_ctrl_m4	R	57	84	TATAATAATAAATTAATTTTTTTTAAGT	7.6
17:78375916-78376117	site	dyads_test_vs_ctrl_m4	D	67	94	AATTAATTTATTATTATAATGACCTAAT	8.1
17:79864923-79865124	site	dyads_test_vs_ctrl_m4	D	-97	-70	GTACATTTTAACATATTAATCATTAATA	8.7
17:82191826-82192027	site	dyads_test_vs_ctrl_m4	D	-56	-29	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
17:82191826-82192027	site	dyads_test_vs_ctrl_m4	R	0	27	GCGCAGTTTTTTTTTCTTGTCTATAAAG	10.3
17:83425037-83425238	site	dyads_test_vs_ctrl_m4	R	-1	26	ATAACTAATTTATTATTTTTATTCAATA	8.0
17:83425037-83425238	site	dyads_test_vs_ctrl_m4	D	49	76	ACGCACTTTATTATTTTGCTTTTTAAGT	7.7
18:7679541-7679742	site	dyads_test_vs_ctrl_m4	D	45	72	ATGCATATTTATTTGTTTATTTATTTAT	8.1
18:34909808-34910009	site	dyads_test_vs_ctrl_m4	D	-63	-36	GCACAGCAGTCTCGGCTACTTTCCGAAC	8.1
18:42071288-42071489	site	dyads_test_vs_ctrl_m4	D	-6	21	TTTTAATATTATTTACTTATTTTTATTT	8.0
18:46506114-46506315	site	dyads_test_vs_ctrl_m4	D	-70	-43	AAGTAAATCTCTTTTTTTATCTACAAAC	9.5
18:73592182-73592383	site	dyads_test_vs_ctrl_m4	D	49	76	TATCAATATAGTTTAGTATTTGCTAATT	8.8
18:79856329-79856530	site	dyads_test_vs_ctrl_m4	R	-27	0	CTGTCTAATTCTTTATTAATTTAAAATA	8.2
18:79856329-79856530	site	dyads_test_vs_ctrl_m4	R	-9	18	GTTATTATGCCTATCATTCTGTCTAATT	8.1
18:79856329-79856530	site	dyads_test_vs_ctrl_m4	D	42	69	TTTCTGATTTATTTTATTTTAATCAAAT	7.6
18:79856329-79856530	site	dyads_test_vs_ctrl_m4	D	67	94	AATTATAATTACATCTTTTTCTCCTACC	8.4
18:84082530-84082731	site	dyads_test_vs_ctrl_m4	D	64	91	TGGTATTTTTGTATTTTTTTATATAAGG	9.1
18:85848456-85848657	site	dyads_test_vs_ctrl_m4	D	9	36	CGATAGATTTCCATTTTTCGGTAGAGAC	7.9
19:6592878-6593079	site	dyads_test_vs_ctrl_m4	D	23	50	ATGTAGGTTTTCATTTCTCTTTCATAAC	7.7
19:21280422-21280623	site	dyads_test_vs_ctrl_m4	R	32	59	ATGTAGTAATTTTATATTCTCTGGATTT	8.2
19:28763056-28763257	site	dyads_test_vs_ctrl_m4	R	12	39	GGTCAGGTGGCCATTCTTCTGTTCAAAT	8.5
19:41214718-41214919	site	dyads_test_vs_ctrl_m4	R	10	37	ATGCAGTAGGCTTTACTACAGTACATGG	10.0
19:61175553-61175754	site	dyads_test_vs_ctrl_m4	D	-58	-31	CATTAGACATTCTTTTTTCTCTACCACG	7.9
2:9041229-9041430	site	dyads_test_vs_ctrl_m4	D	41	68	TCACAAAATCCGATGCTTCTTTCACAGA	7.8
2:15631544-15631745	site	dyads_test_vs_ctrl_m4	D	-71	-44	TTTTAAAATTCAATTTTAATTTTCAAAG	7.9
2:22554307-22554508	site	dyads_test_vs_ctrl_m4	R	-48	-21	CCACAGTTATGTTTATATCTAAACCATA	7.8
2:30068968-30069169	site	dyads_test_vs_ctrl_m4	R	-84	-57	TGTTATATTTTTGTTCTACTTTCAAAAT	8.9
2:30068968-30069169	site	dyads_test_vs_ctrl_m4	R	-76	-49	GCGGAGTTTGTTATATTTTTGTTCTACT	9.1
2:37429653-37429854	site	dyads_test_vs_ctrl_m4	R	36	63	GTGATGTATCCATTTATATTAACGATAC	7.7
2:64474632-64474833	site	dyads_test_vs_ctrl_m4	D	-83	-56	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
2:70023480-70023681	site	dyads_test_vs_ctrl_m4	R	-61	-34	ATACATTATACCATGTATATATAGCATC	8.6
2:72970852-72971053	site	dyads_test_vs_ctrl_m4	R	30	57	GGAAATATTACCTTTGTACCAATCAATA	7.7
2:104428319-104428520	site	dyads_test_vs_ctrl_m4	D	9	36	CTACAATATACTTGAGGTCTATGCAAAA	8.8
2:109724142-109724343	site	dyads_test_vs_ctrl_m4	D	-63	-36	AGACAAAATTATCTATTTGTATATATAC	8.0
2:122011897-122012098	site	dyads_test_vs_ctrl_m4	R	-10	17	ATACAAAATATCAAACTTCTCTTTAGAA	7.9
2:155390752-155390953	site	dyads_test_vs_ctrl_m4	D	-84	-57	ACACTATATAATAAAATTATTTACAACA	8.4
3:13669877-13670078	site	dyads_test_vs_ctrl_m4	D	-68	-41	ATGTAGGTTTTCATTTCTCTTTCATAAC	7.7
3:16214339-16214540	site	dyads_test_vs_ctrl_m4	R	-25	2	GATTATTTTGCTTTTAATCTGTCAAATA	8.6
3:54810647-54810848	site	dyads_test_vs_ctrl_m4	R	-85	-58	TCGAATTAGAGTCGATTTCTCTATAACA	8.2
3:90361374-90361575	site	dyads_test_vs_ctrl_m4	R	69	96	TTCATGTTTTTTTTTTTTCTACACAATG	8.1
3:152233525-152233726	site	dyads_test_vs_ctrl_m4	R	-86	-59	ATGTAGTCTAATATATTAATATGCAAAG	10.2
3:152233525-152233726	site	dyads_test_vs_ctrl_m4	D	-84	-57	TTGCATATTAATATATTAGACTACATGC	8.2
4:29603907-29604108	site	dyads_test_vs_ctrl_m4	D	-91	-64	ATATAATATATGTCAAATATTTACAATA	7.7
4:82294688-82294889	site	dyads_test_vs_ctrl_m4	D	-98	-71	CTGAATATATATATATTTATATATGTAT	7.9
4:82294688-82294889	site	dyads_test_vs_ctrl_m4	D	-94	-67	ATATATATATATTTATATATGTATATTA	8.8
4:82294688-82294889	site	dyads_test_vs_ctrl_m4	D	-92	-65	ATATATATATTTATATATGTATATTAAA	7.9
4:82294688-82294889	site	dyads_test_vs_ctrl_m4	D	-90	-63	ATATATATTTATATATGTATATTAAAAA	9.0
4:82294688-82294889	site	dyads_test_vs_ctrl_m4	D	46	73	AAAAAGCATACATTATTTCTTTTTTAAA	8.1
4:95632907-95633108	site	dyads_test_vs_ctrl_m4	D	-31	-4	ATTATTATTATTATTATTATTTACCATT	8.8
4:135867227-135867428	site	dyads_test_vs_ctrl_m4	R	-39	-12	ATGTAGTTTTCGATAATTCTTTTATCTT	8.5
4:146277742-146277943	site	dyads_test_vs_ctrl_m4	R	58	85	ATACAGTGTATCTATGTACTATATGTGC	8.5
5:22612641-22612842	site	dyads_test_vs_ctrl_m4	D	-75	-48	CTGGGATATCTTTTTCTTCTGTGCAACC	7.7
5:22693550-22693751	site	dyads_test_vs_ctrl_m4	D	27	54	GCGAAGATCAAAATTCTTCTTTACAATT	9.6
5:29833047-29833248	site	dyads_test_vs_ctrl_m4	D	24	51	GGACAATATTCTGTCTTTCTTTCCGATC	10.4
5:32491031-32491232	site	dyads_test_vs_ctrl_m4	D	58	85	GTAAAGGATCTTAAATTTTTTTCTAATA	8.3
5:108085485-108085686	site	dyads_test_vs_ctrl_m4	D	-15	12	TAAAAAATTACTTATTTTATTTATATGA	7.6
5:115298600-115298801	site	dyads_test_vs_ctrl_m4	R	3	30	GGTCAGGTGGCCATTCTTCTGTTCAAAT	8.5
5:149048501-149048702	site	dyads_test_vs_ctrl_m4	D	41	68	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
6:10600556-10600757	site	dyads_test_vs_ctrl_m4	D	-82	-55	ATATATATTTGGTTTCTACTATTAAAGT	9.7
6:16238269-16238470	site	dyads_test_vs_ctrl_m4	R	-62	-35	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
6:44792892-44793093	site	dyads_test_vs_ctrl_m4	R	-75	-48	GCATAGTTCACCATCTAAGTATCCAATA	7.5
6:71683735-71683936	site	dyads_test_vs_ctrl_m4	D	46	73	ATAAAGCTTCCCTCGTGTCTGTACATAG	8.0
6:83362600-83362801	site	dyads_test_vs_ctrl_m4	R	-84	-57	TTGTATAATTTTTACCTTTTTGTTAATA	7.7
6:98061195-98061396	site	dyads_test_vs_ctrl_m4	D	-29	-2	GTTCATCTTTCTATATATCTCCCCAAAA	9.7
6:113153052-113153253	site	dyads_test_vs_ctrl_m4	R	-46	-19	TTACATACGTTTTATATAATATACAAAG	9.7
6:142970384-142970585	site	dyads_test_vs_ctrl_m4	D	73	100	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
7:25792624-25792825	site	dyads_test_vs_ctrl_m4	D	63	90	TAACTGAATAGCTTCATATTTTCTAAGT	8.0
7:36118675-36118876	site	dyads_test_vs_ctrl_m4	R	-14	13	CTGGGATATCTTTTTCTTCTGTGCAACC	7.7
7:59276223-59276424	site	dyads_test_vs_ctrl_m4	R	-63	-36	GTGGAGATTACTATTCTCCATTACAATA	10.3
7:90208138-90208339	site	dyads_test_vs_ctrl_m4	D	-45	-18	TCACAGTATGTTTGATTTTTATCCACAA	8.6
7:96202699-96202900	site	dyads_test_vs_ctrl_m4	D	2	29	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
7:96202699-96202900	site	dyads_test_vs_ctrl_m4	R	58	85	GCGCAGTTTTTTTTTCTTGTCTATAAAG	10.3
7:99090278-99090479	site	dyads_test_vs_ctrl_m4	R	61	88	ATGTAGGTTTTCATTTTTCTTTTATAAC	9.9
7:111072120-111072321	site	dyads_test_vs_ctrl_m4	D	32	59	TTACAGTTAAGAATTTTTCTGTAACAAC	7.6
7:123194182-123194383	site	dyads_test_vs_ctrl_m4	R	-99	-72	TTACAGTATGCATAGTTACTGATCTCGG	7.6
8:61121319-61121520	site	dyads_test_vs_ctrl_m4	R	-81	-54	GTGAAAATTATTTAACTACTATTTAGTA	8.7
8:61363928-61364129	site	dyads_test_vs_ctrl_m4	D	2	29	TCGCTTTTCCCCATATTTCTTTGTAAAC	8.5
8:81195096-81195297	site	dyads_test_vs_ctrl_m4	D	66	93	TATAAGAGTACTAGTTTTCATTTAAATT	7.7
8:89146331-89146532	site	dyads_test_vs_ctrl_m4	R	17	44	TATTTACATTTTATATTTTTGTACATAT	7.6
8:102633596-102633797	site	dyads_test_vs_ctrl_m4	R	-81	-54	TTTAAAGTTCTTATTTTAGTATACATAC	8.3
8:126981352-126981553	site	dyads_test_vs_ctrl_m4	D	45	72	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
9:3022432-3022633	site	dyads_test_vs_ctrl_m4	D	-85	-58	TCAATGATTTTCATTTTTCTTGCCATAT	7.6
9:47466142-47466343	site	dyads_test_vs_ctrl_m4	R	28	55	TCACTGTATTTTTTTTTCCTCACCAATC	7.7
9:81677768-81677969	site	dyads_test_vs_ctrl_m4	R	-65	-38	TGTTATATTTTTGTTCTACTTTCAAAAT	8.9
9:81677768-81677969	site	dyads_test_vs_ctrl_m4	R	-57	-30	GCGGAGTTTGTTATATTTTTGTTCTACT	9.1
9:88479724-88479925	site	dyads_test_vs_ctrl_m4	D	-79	-52	AAAAATATTTTTTTAATTCTTTCTACAC	9.3
9:100957175-100957376	site	dyads_test_vs_ctrl_m4	R	21	48	TATTTGAATCTCACTATTCTATAGAAAA	7.9
X:3084861-3085062	site	dyads_test_vs_ctrl_m4	D	-71	-44	CTGTATATTGCTTTTATTATGTTTAGGT	8.4
X:13156341-13156542	site	dyads_test_vs_ctrl_m4	D	60	87	ATGCATATATACTTTTTTATGAACGAAT	8.7
X:20272752-20272953	site	dyads_test_vs_ctrl_m4	R	-51	-24	CATTGGCTTTCTTTATTTCTCTACATAT	8.1
X:32254213-32254414	site	dyads_test_vs_ctrl_m4	R	-21	6	TAAAATATTGCTATACTAAATTATAAAA	7.8
X:38183283-38183484	site	dyads_test_vs_ctrl_m4	R	-7	20	TACAAAAAGTTTTTTTTTCTTTTAAATA	8.5
X:51004277-51004478	site	dyads_test_vs_ctrl_m4	D	-86	-59	ATACAGATATCTATTTTATTAAAAAAGT	9.0
X:56155758-56155959	site	dyads_test_vs_ctrl_m4	R	-52	-25	TAGAATTAGGGTCGATTTCTCTATAACA	7.5
X:61785809-61786010	site	dyads_test_vs_ctrl_m4	R	-51	-24	ACTCAGTAGTCCATATTGCTATCTCATC	7.7
X:96485266-96485467	site	dyads_test_vs_ctrl_m4	R	16	43	CTGGGATATCTTTTTCTTCTGTGCAACC	7.7
X:146176106-146176307	site	dyads_test_vs_ctrl_m4	R	-57	-30	ATGTAGGTTTTCATTTCTCTTTCATAAC	7.7
;
; Matrices
;	matrix	name                 	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	dyads_test_vs_ctrl_m4	28	4	0	-24.600	17.500	42.100	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                 	matches	scored
;	1	dyads_test_vs_ctrl_m4	215	0
;		TOTAL          	215	0
; Host name	rsat
; Job started	2025-09-18.095857
; Job done	2025-09-18.095857
; Seconds	0.26
;	user	0.26
;	system	0.02
;	cuser	0.08
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:14839904-14840105	site	oligos_6nt_test_vs_ctrl_m1	R	-87	-78	AAATGGAGGA	7.6
1:24613180-24613381	site	oligos_6nt_test_vs_ctrl_m1	D	-78	-69	AAATGGAGAC	7.6
1:24613180-24613381	site	oligos_6nt_test_vs_ctrl_m1	D	68	77	ACATGGAGTC	7.7
1:36472236-36472437	site	oligos_6nt_test_vs_ctrl_m1	D	-22	-13	CGATGGAGCT	8.1
1:55014753-55014954	site	oligos_6nt_test_vs_ctrl_m1	R	29	38	TGATGGAGAC	7.6
1:55760127-55760328	site	oligos_6nt_test_vs_ctrl_m1	R	-49	-40	AAATGGAGAC	7.6
1:63058063-63058264	site	oligos_6nt_test_vs_ctrl_m1	D	-98	-89	CTATGGAGCT	7.5
1:75216069-75216270	site	oligos_6nt_test_vs_ctrl_m1	D	84	93	TGATGGAGGA	7.6
1:97935099-97935300	site	oligos_6nt_test_vs_ctrl_m1	D	52	61	ACATGGAGTG	7.8
1:139446980-139447181	site	oligos_6nt_test_vs_ctrl_m1	D	19	28	CAATGGAGTA	7.5
1:156786766-156786967	site	oligos_6nt_test_vs_ctrl_m1	D	-56	-47	AGATGGAGAA	8.1
1:157175654-157175855	site	oligos_6nt_test_vs_ctrl_m1	R	47	56	CTATGGAGCA	7.7
1:161726737-161726938	site	oligos_6nt_test_vs_ctrl_m1	R	79	88	CCATGGAGAC	7.5
1:180093957-180094158	site	oligos_6nt_test_vs_ctrl_m1	D	-26	-17	TCATGGAGAT	7.8
1:184037289-184037490	site	oligos_6nt_test_vs_ctrl_m1	D	-10	-1	TCATGGAGTA	8.0
1:189277591-189277792	site	oligos_6nt_test_vs_ctrl_m1	R	63	72	GCATGGAGAT	7.8
10:8601218-8601419	site	oligos_6nt_test_vs_ctrl_m1	R	-86	-77	CCATGGAGCG	8.1
10:14746811-14747012	site	oligos_6nt_test_vs_ctrl_m1	D	24	33	CCATGGAGGA	7.5
10:30011723-30011924	site	oligos_6nt_test_vs_ctrl_m1	D	-24	-15	ACATGGAGAA	8.2
10:30781417-30781618	site	oligos_6nt_test_vs_ctrl_m1	R	-84	-75	AGATGGAGAA	8.1
10:31250289-31250490	site	oligos_6nt_test_vs_ctrl_m1	R	-69	-60	AGATGGAGTT	7.7
10:40566180-40566381	site	oligos_6nt_test_vs_ctrl_m1	D	14	23	TGATGGAGGA	7.6
10:58480024-58480225	site	oligos_6nt_test_vs_ctrl_m1	D	75	84	AGATGGAGAA	8.1
10:62764325-62764526	site	oligos_6nt_test_vs_ctrl_m1	R	-99	-90	TGATGGAGAA	7.7
10:73202476-73202677	site	oligos_6nt_test_vs_ctrl_m1	D	-89	-80	TTATGGAGGA	8.1
10:73202476-73202677	site	oligos_6nt_test_vs_ctrl_m1	D	-26	-17	CTATGGAGGT	8.0
10:73202476-73202677	site	oligos_6nt_test_vs_ctrl_m1	D	-5	4	CTATGGAGCA	7.7
10:80293829-80294030	site	oligos_6nt_test_vs_ctrl_m1	R	67	76	TGATGGAGAA	7.7
10:84738423-84738624	site	oligos_6nt_test_vs_ctrl_m1	D	-11	-2	GCATGGAGGA	7.6
10:84738423-84738624	site	oligos_6nt_test_vs_ctrl_m1	D	29	38	GCATGGAGGA	7.6
10:84738423-84738624	site	oligos_6nt_test_vs_ctrl_m1	D	69	78	GCATGGAGGA	7.6
10:85907638-85907839	site	oligos_6nt_test_vs_ctrl_m1	R	76	85	CCATGGAGAA	7.6
10:116972810-116973011	site	oligos_6nt_test_vs_ctrl_m1	D	-69	-60	TGATGGAGAA	7.7
10:116972810-116973011	site	oligos_6nt_test_vs_ctrl_m1	R	80	89	CCATGGAGAA	7.6
10:119216409-119216610	site	oligos_6nt_test_vs_ctrl_m1	D	4	13	ACATGGAGTC	7.7
10:128076614-128076815	site	oligos_6nt_test_vs_ctrl_m1	D	39	48	GCATGGAGGA	7.6
10:128438180-128438381	site	oligos_6nt_test_vs_ctrl_m1	R	-83	-74	CGATGGAGGC	8.2
10:128679305-128679506	site	oligos_6nt_test_vs_ctrl_m1	D	63	72	GGATGGAGGT	7.7
10:129665038-129665239	site	oligos_6nt_test_vs_ctrl_m1	D	71	80	AAATGGAGGA	7.6
10:129665519-129665720	site	oligos_6nt_test_vs_ctrl_m1	R	-62	-53	TAATGGAGAA	7.9
11:5080527-5080728	site	oligos_6nt_test_vs_ctrl_m1	R	-51	-42	ATATGGAGAG	8.6
11:16515123-16515324	site	oligos_6nt_test_vs_ctrl_m1	D	-6	3	TGATGGAGTA	8.0
11:17199750-17199951	site	oligos_6nt_test_vs_ctrl_m1	D	-5	4	ACATGGAGTT	7.8
11:31934624-31934825	site	oligos_6nt_test_vs_ctrl_m1	R	-55	-46	GTATGGAGAA	8.4
11:69680169-69680370	site	oligos_6nt_test_vs_ctrl_m1	R	-80	-71	CCATGGAGGA	7.5
11:69990038-69990239	site	oligos_6nt_test_vs_ctrl_m1	D	46	55	TTATGGAGTC	7.6
11:73611547-73611748	site	oligos_6nt_test_vs_ctrl_m1	R	-61	-52	CAATGGAGTA	7.5
11:75724927-75725128	site	oligos_6nt_test_vs_ctrl_m1	D	-17	-8	GGATGGAGAG	7.7
11:77295443-77295644	site	oligos_6nt_test_vs_ctrl_m1	D	-19	-10	ACATGGAGAG	8.1
11:78160160-78160361	site	oligos_6nt_test_vs_ctrl_m1	D	-28	-19	AGATGGAGAG	8.0
11:78272016-78272217	site	oligos_6nt_test_vs_ctrl_m1	D	-41	-32	GCATGGAGAG	7.6
11:86707074-86707275	site	oligos_6nt_test_vs_ctrl_m1	R	-2	7	TTATGGAGTA	8.4
11:88051011-88051212	site	oligos_6nt_test_vs_ctrl_m1	D	-35	-26	TCATGGAGCG	8.2
11:97969034-97969235	site	oligos_6nt_test_vs_ctrl_m1	D	-70	-61	GCATGGAGAT	7.8
11:100257460-100257661	site	oligos_6nt_test_vs_ctrl_m1	R	-32	-23	AGATGGAGCA	7.7
11:100320907-100321108	site	oligos_6nt_test_vs_ctrl_m1	D	-22	-13	ATATGGAGAA	8.7
11:100958963-100959164	site	oligos_6nt_test_vs_ctrl_m1	R	5	14	AGATGGAGAA	8.1
11:100970068-100970269	site	oligos_6nt_test_vs_ctrl_m1	R	41	50	AGATGGAGGG	7.8
11:102605760-102605961	site	oligos_6nt_test_vs_ctrl_m1	R	-94	-85	AGATGGAGCT	7.5
11:109396165-109396366	site	oligos_6nt_test_vs_ctrl_m1	R	-64	-55	TTATGGAGAC	8.1
11:120347703-120347904	site	oligos_6nt_test_vs_ctrl_m1	R	-56	-47	ACATGGAGAA	8.2
12:4226489-4226690	site	oligos_6nt_test_vs_ctrl_m1	D	-76	-67	GCATGGAGGA	7.6
12:11252195-11252396	site	oligos_6nt_test_vs_ctrl_m1	D	84	93	GTATGGAGGG	8.1
12:18364940-18365141	site	oligos_6nt_test_vs_ctrl_m1	D	-65	-56	TCATGGAGGT	7.6
12:18364940-18365141	site	oligos_6nt_test_vs_ctrl_m1	D	-36	-27	CTATGGAGCA	7.7
12:34385176-34385377	site	oligos_6nt_test_vs_ctrl_m1	D	-18	-9	ACATGGAGTT	7.8
12:35773186-35773387	site	oligos_6nt_test_vs_ctrl_m1	R	29	38	TCATGGAGGT	7.6
12:51134690-51134891	site	oligos_6nt_test_vs_ctrl_m1	D	81	90	GGATGGAGAT	7.9
12:110639725-110639926	site	oligos_6nt_test_vs_ctrl_m1	R	40	49	GCATGGAGAA	7.7
12:110640562-110640763	site	oligos_6nt_test_vs_ctrl_m1	D	62	71	ACATGGAGGT	8.1
12:110793493-110793694	site	oligos_6nt_test_vs_ctrl_m1	D	58	67	CTATGGAGTT	7.7
12:116507537-116507738	site	oligos_6nt_test_vs_ctrl_m1	R	25	34	AAATGGAGAT	7.7
13:24812698-24812899	site	oligos_6nt_test_vs_ctrl_m1	D	-17	-8	AAATGGAGAA	7.7
13:34074546-34074747	site	oligos_6nt_test_vs_ctrl_m1	R	-64	-55	AGATGGAGTT	7.7
13:35991102-35991303	site	oligos_6nt_test_vs_ctrl_m1	R	-72	-63	GCATGGAGTA	8.0
13:64624414-64624615	site	oligos_6nt_test_vs_ctrl_m1	R	3	12	CTATGGAGAA	8.1
13:64914168-64914369	site	oligos_6nt_test_vs_ctrl_m1	D	-64	-55	ATATGGAGAA	8.7
13:81065637-81065838	site	oligos_6nt_test_vs_ctrl_m1	R	36	45	CGATGGAGGG	8.4
13:98842738-98842939	site	oligos_6nt_test_vs_ctrl_m1	R	60	69	AAATGGAGAG	7.5
13:107726003-107726204	site	oligos_6nt_test_vs_ctrl_m1	D	-65	-56	GGATGGAGGT	7.7
13:108671041-108671242	site	oligos_6nt_test_vs_ctrl_m1	R	77	86	TCATGGAGAG	7.6
13:116153831-116154032	site	oligos_6nt_test_vs_ctrl_m1	R	86	95	ACATGGAGCT	7.7
13:119699751-119699952	site	oligos_6nt_test_vs_ctrl_m1	D	48	57	TGATGGAGAG	7.6
14:8800014-8800215	site	oligos_6nt_test_vs_ctrl_m1	R	-15	-6	GGATGGAGAT	7.9
14:18270227-18270428	site	oligos_6nt_test_vs_ctrl_m1	R	86	95	CTATGGAGGA	8.0
14:40006417-40006618	site	oligos_6nt_test_vs_ctrl_m1	D	-71	-62	ATATGGAGAA	8.7
14:53213783-53213984	site	oligos_6nt_test_vs_ctrl_m1	D	79	88	CTATGGAGGA	8.0
14:54468347-54468548	site	oligos_6nt_test_vs_ctrl_m1	D	73	82	CGATGGAGCG	9.1
14:61324887-61325088	site	oligos_6nt_test_vs_ctrl_m1	R	-97	-88	CTATGGAGGT	8.0
14:92603330-92603531	site	oligos_6nt_test_vs_ctrl_m1	D	79	88	TAATGGAGGT	7.8
15:8351574-8351775	site	oligos_6nt_test_vs_ctrl_m1	D	-61	-52	TTATGGAGTC	7.6
15:8928677-8928878	site	oligos_6nt_test_vs_ctrl_m1	R	60	69	CCATGGAGAA	7.6
15:12136444-12136645	site	oligos_6nt_test_vs_ctrl_m1	D	28	37	ATATGGAGGC	8.2
15:18164006-18164207	site	oligos_6nt_test_vs_ctrl_m1	D	-52	-43	CCATGGAGAA	7.6
15:37868261-37868462	site	oligos_6nt_test_vs_ctrl_m1	D	-78	-69	CTATGGAGGA	8.0
15:50746993-50747194	site	oligos_6nt_test_vs_ctrl_m1	D	77	86	ACATGGAGTC	7.7
15:58900176-58900377	site	oligos_6nt_test_vs_ctrl_m1	D	-92	-83	AAATGGAGTA	7.9
15:59211518-59211719	site	oligos_6nt_test_vs_ctrl_m1	D	-89	-80	GCATGGAGGA	7.6
15:73343126-73343327	site	oligos_6nt_test_vs_ctrl_m1	R	-79	-70	GCATGGAGAT	7.8
15:74094235-74094436	site	oligos_6nt_test_vs_ctrl_m1	D	73	82	CTATGGAGCT	7.5
15:77079096-77079297	site	oligos_6nt_test_vs_ctrl_m1	D	-90	-81	ACATGGAGAG	8.1
15:93234384-93234585	site	oligos_6nt_test_vs_ctrl_m1	R	-20	-11	ACATGGAGCG	8.7
15:99034084-99034285	site	oligos_6nt_test_vs_ctrl_m1	R	-82	-73	GGATGGAGAT	7.9
15:102409493-102409694	site	oligos_6nt_test_vs_ctrl_m1	R	20	29	GCATGGAGGA	7.6
16:8830409-8830610	site	oligos_6nt_test_vs_ctrl_m1	D	-52	-43	GGATGGAGGA	7.7
16:11393358-11393559	site	oligos_6nt_test_vs_ctrl_m1	D	-81	-72	TGATGGAGAT	7.8
16:20661561-20661762	site	oligos_6nt_test_vs_ctrl_m1	R	38	47	AGATGGAGTT	7.7
16:23016902-23017103	site	oligos_6nt_test_vs_ctrl_m1	R	57	66	AGATGGAGTA	8.4
16:30065512-30065713	site	oligos_6nt_test_vs_ctrl_m1	D	-9	0	TAATGGAGAA	7.9
16:32631588-32631789	site	oligos_6nt_test_vs_ctrl_m1	R	-9	0	ATATGGAGAT	8.7
16:38108699-38108900	site	oligos_6nt_test_vs_ctrl_m1	R	-47	-38	AGATGGAGCT	7.5
16:48218849-48219050	site	oligos_6nt_test_vs_ctrl_m1	D	-1	8	TTATGGAGTC	7.6
16:50665995-50666196	site	oligos_6nt_test_vs_ctrl_m1	R	47	56	TCATGGAGGA	7.7
16:53985218-53985419	site	oligos_6nt_test_vs_ctrl_m1	D	-10	-1	TTATGGAGCA	7.7
16:53985218-53985419	site	oligos_6nt_test_vs_ctrl_m1	R	7	16	TGATGGAGAT	7.8
16:85644707-85644908	site	oligos_6nt_test_vs_ctrl_m1	R	-64	-55	CGATGGAGTG	8.2
17:3044566-3044767	site	oligos_6nt_test_vs_ctrl_m1	R	-26	-17	TCATGGAGAC	7.7
17:3044566-3044767	site	oligos_6nt_test_vs_ctrl_m1	D	42	51	AGATGGAGGC	7.6
17:4880952-4881153	site	oligos_6nt_test_vs_ctrl_m1	D	-8	1	CCATGGAGCG	8.1
17:20661619-20661820	site	oligos_6nt_test_vs_ctrl_m1	D	-19	-10	TAATGGAGAC	7.8
17:20661619-20661820	site	oligos_6nt_test_vs_ctrl_m1	D	44	53	ACATGGAGCT	7.7
17:33650112-33650313	site	oligos_6nt_test_vs_ctrl_m1	R	-74	-65	CCATGGAGCG	8.1
17:35244257-35244458	site	oligos_6nt_test_vs_ctrl_m1	R	-35	-26	ACATGGAGCC	7.5
17:35244257-35244458	site	oligos_6nt_test_vs_ctrl_m1	R	76	85	AAATGGAGAC	7.6
17:45568911-45569112	site	oligos_6nt_test_vs_ctrl_m1	R	-87	-78	AAATGGAGGA	7.6
17:78491587-78491788	site	oligos_6nt_test_vs_ctrl_m1	D	42	51	AAATGGAGAT	7.7
17:79934084-79934285	site	oligos_6nt_test_vs_ctrl_m1	R	79	88	AGATGGAGAT	8.2
17:90616092-90616293	site	oligos_6nt_test_vs_ctrl_m1	D	-68	-59	AGATGGAGAA	8.1
18:6490582-6490783	site	oligos_6nt_test_vs_ctrl_m1	D	-13	-4	TCATGGAGAA	7.8
18:6760438-6760639	site	oligos_6nt_test_vs_ctrl_m1	D	-100	-91	AAATGGAGAT	7.7
18:15989114-15989315	site	oligos_6nt_test_vs_ctrl_m1	D	-77	-68	GTATGGAGCG	8.9
18:34803502-34803703	site	oligos_6nt_test_vs_ctrl_m1	D	8	17	TGATGGAGGT	7.6
18:35859045-35859246	site	oligos_6nt_test_vs_ctrl_m1	D	-39	-30	ACATGGAGGC	7.7
18:36287712-36287913	site	oligos_6nt_test_vs_ctrl_m1	D	-31	-22	CTATGGAGTG	7.6
18:38360121-38360322	site	oligos_6nt_test_vs_ctrl_m1	D	75	84	GGATGGAGAT	7.9
18:38714421-38714622	site	oligos_6nt_test_vs_ctrl_m1	D	39	48	AGATGGAGGG	7.8
18:46506114-46506315	site	oligos_6nt_test_vs_ctrl_m1	R	90	99	AGATGGAGAA	8.1
18:47112302-47112503	site	oligos_6nt_test_vs_ctrl_m1	D	0	9	ATATGGAGGC	8.2
18:64288561-64288762	site	oligos_6nt_test_vs_ctrl_m1	D	-93	-84	CCATGGAGAA	7.6
18:64288561-64288762	site	oligos_6nt_test_vs_ctrl_m1	R	56	65	TGATGGAGAA	7.7
18:67205805-67206006	site	oligos_6nt_test_vs_ctrl_m1	D	88	97	ACATGGAGCT	7.7
18:82339543-82339744	site	oligos_6nt_test_vs_ctrl_m1	D	51	60	GCATGGAGGA	7.6
18:87474103-87474304	site	oligos_6nt_test_vs_ctrl_m1	R	48	57	CCATGGAGCG	8.1
19:4787798-4787999	site	oligos_6nt_test_vs_ctrl_m1	R	-32	-23	ATATGGAGCA	8.3
19:5493561-5493762	site	oligos_6nt_test_vs_ctrl_m1	R	5	14	GGATGGAGGG	7.5
19:6374059-6374260	site	oligos_6nt_test_vs_ctrl_m1	D	-73	-64	GCATGGAGGT	7.6
19:6376346-6376547	site	oligos_6nt_test_vs_ctrl_m1	R	10	19	ATATGGAGCC	8.0
19:9002719-9002920	site	oligos_6nt_test_vs_ctrl_m1	R	49	58	GCATGGAGAT	7.8
19:9008854-9009055	site	oligos_6nt_test_vs_ctrl_m1	R	91	100	GCATGGAGAT	7.8
19:11121759-11121960	site	oligos_6nt_test_vs_ctrl_m1	D	77	86	GTATGGAGGA	8.3
19:28033621-28033822	site	oligos_6nt_test_vs_ctrl_m1	D	-38	-29	CTATGGAGAG	8.0
19:39054283-39054484	site	oligos_6nt_test_vs_ctrl_m1	R	-39	-30	AAATGGAGCG	8.1
19:40561358-40561559	site	oligos_6nt_test_vs_ctrl_m1	R	54	63	TTATGGAGTT	7.7
19:40621964-40622165	site	oligos_6nt_test_vs_ctrl_m1	D	-66	-57	TTATGGAGTT	7.7
19:40622559-40622760	site	oligos_6nt_test_vs_ctrl_m1	D	-84	-75	GTATGGAGTT	8.0
2:7076199-7076400	site	oligos_6nt_test_vs_ctrl_m1	D	3	12	ACATGGAGCG	8.7
2:19993021-19993222	site	oligos_6nt_test_vs_ctrl_m1	D	-85	-76	GTATGGAGTT	8.0
2:23650662-23650863	site	oligos_6nt_test_vs_ctrl_m1	R	-55	-46	CCATGGAGGA	7.5
2:23650662-23650863	site	oligos_6nt_test_vs_ctrl_m1	R	57	66	ATATGGAGGA	8.6
2:24593420-24593621	site	oligos_6nt_test_vs_ctrl_m1	R	-41	-32	ACATGGAGAT	8.3
2:30472797-30472998	site	oligos_6nt_test_vs_ctrl_m1	D	30	39	AGATGGAGAT	8.2
2:36389246-36389447	site	oligos_6nt_test_vs_ctrl_m1	D	14	23	AAATGGAGGA	7.6
2:36389646-36389847	site	oligos_6nt_test_vs_ctrl_m1	D	-81	-72	AGATGGAGAT	8.2
2:36389646-36389847	site	oligos_6nt_test_vs_ctrl_m1	R	-33	-24	TAATGGAGAA	7.9
2:51871179-51871380	site	oligos_6nt_test_vs_ctrl_m1	R	-92	-83	CCATGGAGCG	8.1
2:57112086-57112287	site	oligos_6nt_test_vs_ctrl_m1	D	-18	-9	TAATGGAGGA	7.8
2:72938019-72938220	site	oligos_6nt_test_vs_ctrl_m1	R	-53	-44	CAATGGAGTA	7.5
2:91773049-91773250	site	oligos_6nt_test_vs_ctrl_m1	D	-32	-23	AGATGGAGGG	7.8
2:116527923-116528124	site	oligos_6nt_test_vs_ctrl_m1	R	-18	-9	TTATGGAGAC	8.1
2:127238440-127238641	site	oligos_6nt_test_vs_ctrl_m1	D	-19	-10	TCATGGAGAT	7.8
2:127238440-127238641	site	oligos_6nt_test_vs_ctrl_m1	D	-13	-4	AGATGGAGGA	8.0
2:129208236-129208437	site	oligos_6nt_test_vs_ctrl_m1	D	-74	-65	AAATGGAGAC	7.6
2:131936894-131937095	site	oligos_6nt_test_vs_ctrl_m1	D	45	54	TGATGGAGCG	8.2
2:140073108-140073309	site	oligos_6nt_test_vs_ctrl_m1	R	18	27	CTATGGAGGA	8.0
2:143989994-143990195	site	oligos_6nt_test_vs_ctrl_m1	D	51	60	TCATGGAGAA	7.8
2:152829430-152829631	site	oligos_6nt_test_vs_ctrl_m1	R	55	64	GGATGGAGTA	8.1
2:153187220-153187421	site	oligos_6nt_test_vs_ctrl_m1	R	-84	-75	AGATGGAGCT	7.5
2:153317439-153317640	site	oligos_6nt_test_vs_ctrl_m1	D	86	95	AGATGGAGGA	8.0
2:156790073-156790274	site	oligos_6nt_test_vs_ctrl_m1	R	81	90	ACATGGAGCT	7.7
2:157557994-157558195	site	oligos_6nt_test_vs_ctrl_m1	D	-23	-14	ACATGGAGTG	7.8
2:162908080-162908281	site	oligos_6nt_test_vs_ctrl_m1	D	-36	-27	CTATGGAGGA	8.0
2:162908080-162908281	site	oligos_6nt_test_vs_ctrl_m1	D	13	22	AGATGGAGCA	7.7
3:8882271-8882472	site	oligos_6nt_test_vs_ctrl_m1	R	-35	-26	GGATGGAGAT	7.9
3:21049949-21050150	site	oligos_6nt_test_vs_ctrl_m1	D	-90	-81	AGATGGAGTC	7.6
3:34069069-34069270	site	oligos_6nt_test_vs_ctrl_m1	R	28	37	AAATGGAGGA	7.6
3:35895396-35895597	site	oligos_6nt_test_vs_ctrl_m1	D	-41	-32	GAATGGAGTA	7.8
3:37599597-37599798	site	oligos_6nt_test_vs_ctrl_m1	R	51	60	TGATGGAGGA	7.6
3:58548716-58548917	site	oligos_6nt_test_vs_ctrl_m1	D	-24	-15	AAATGGAGAA	7.7
3:60529080-60529281	site	oligos_6nt_test_vs_ctrl_m1	R	-87	-78	CGATGGAGTT	8.3
3:60628787-60628988	site	oligos_6nt_test_vs_ctrl_m1	R	42	51	GTATGGAGTG	8.0
3:65947862-65948063	site	oligos_6nt_test_vs_ctrl_m1	D	-2	7	TAATGGAGAC	7.8
3:65950076-65950277	site	oligos_6nt_test_vs_ctrl_m1	R	91	100	TGATGGAGAA	7.7
3:65951447-65951648	site	oligos_6nt_test_vs_ctrl_m1	R	69	78	AAATGGAGAT	7.7
3:69567022-69567223	site	oligos_6nt_test_vs_ctrl_m1	R	-1	8	CCATGGAGAA	7.6
3:76042639-76042840	site	oligos_6nt_test_vs_ctrl_m1	R	87	96	AAATGGAGGT	7.6
3:87207786-87207987	site	oligos_6nt_test_vs_ctrl_m1	D	-19	-10	ATATGGAGGG	8.4
3:88502916-88503117	site	oligos_6nt_test_vs_ctrl_m1	R	79	88	CCATGGAGAC	7.5
3:90213162-90213363	site	oligos_6nt_test_vs_ctrl_m1	D	72	81	TAATGGAGGA	7.8
3:90341773-90341974	site	oligos_6nt_test_vs_ctrl_m1	D	37	46	TCATGGAGAC	7.7
3:90487410-90487611	site	oligos_6nt_test_vs_ctrl_m1	D	89	98	GCATGGAGAC	7.6
3:92228084-92228285	site	oligos_6nt_test_vs_ctrl_m1	R	-57	-48	TGATGGAGAT	7.8
3:92262892-92263093	site	oligos_6nt_test_vs_ctrl_m1	R	-63	-54	TGATGGAGAT	7.8
3:93235191-93235392	site	oligos_6nt_test_vs_ctrl_m1	R	35	44	TCATGGAGAT	7.8
3:95895458-95895659	site	oligos_6nt_test_vs_ctrl_m1	D	-23	-14	CCATGGAGAC	7.5
3:95896664-95896865	site	oligos_6nt_test_vs_ctrl_m1	R	51	60	AGATGGAGAA	8.1
3:124385707-124385908	site	oligos_6nt_test_vs_ctrl_m1	D	79	88	GGATGGAGAT	7.9
3:144625607-144625808	site	oligos_6nt_test_vs_ctrl_m1	D	-35	-26	TGATGGAGAA	7.7
3:152186623-152186824	site	oligos_6nt_test_vs_ctrl_m1	R	81	90	AGATGGAGAT	8.2
3:154132429-154132630	site	oligos_6nt_test_vs_ctrl_m1	R	-61	-52	ATATGGAGGG	8.4
4:12232809-12233010	site	oligos_6nt_test_vs_ctrl_m1	D	-79	-70	AAATGGAGGT	7.6
4:29603907-29604108	site	oligos_6nt_test_vs_ctrl_m1	D	49	58	TAATGGAGAT	8.0
4:40732784-40732985	site	oligos_6nt_test_vs_ctrl_m1	D	-5	4	TAATGGAGAA	7.9
4:43519359-43519560	site	oligos_6nt_test_vs_ctrl_m1	R	-7	2	AGATGGAGCT	7.5
4:58486622-58486823	site	oligos_6nt_test_vs_ctrl_m1	D	77	86	GTATGGAGCT	7.9
4:72851762-72851963	site	oligos_6nt_test_vs_ctrl_m1	R	42	51	TCATGGAGAA	7.8
4:75131266-75131467	site	oligos_6nt_test_vs_ctrl_m1	R	-86	-77	ACATGGAGCT	7.7
4:106136481-106136682	site	oligos_6nt_test_vs_ctrl_m1	R	0	9	AGATGGAGTA	8.4
4:112955080-112955281	site	oligos_6nt_test_vs_ctrl_m1	R	-45	-36	CCATGGAGGA	7.5
4:117728761-117728962	site	oligos_6nt_test_vs_ctrl_m1	R	-63	-54	AGATGGAGTG	7.7
4:117728761-117728962	site	oligos_6nt_test_vs_ctrl_m1	R	-38	-29	ACATGGAGTG	7.8
4:122859954-122860155	site	oligos_6nt_test_vs_ctrl_m1	R	19	28	GTATGGAGAC	8.3
4:123350733-123350934	site	oligos_6nt_test_vs_ctrl_m1	D	5	14	GTATGGAGCA	8.0
4:129002208-129002409	site	oligos_6nt_test_vs_ctrl_m1	D	75	84	TCATGGAGAA	7.8
4:129083765-129083966	site	oligos_6nt_test_vs_ctrl_m1	R	-52	-43	ACATGGAGCG	8.7
4:130730320-130730521	site	oligos_6nt_test_vs_ctrl_m1	D	-15	-6	ACATGGAGTC	7.7
4:138311782-138311983	site	oligos_6nt_test_vs_ctrl_m1	R	26	35	TCATGGAGAA	7.8
4:146101931-146102132	site	oligos_6nt_test_vs_ctrl_m1	R	60	69	AAATGGAGGA	7.6
4:147738067-147738268	site	oligos_6nt_test_vs_ctrl_m1	D	-50	-41	TGATGGAGAA	7.7
5:3691844-3692045	site	oligos_6nt_test_vs_ctrl_m1	R	73	82	CCATGGAGAC	7.5
5:9260891-9261092	site	oligos_6nt_test_vs_ctrl_m1	R	83	92	ACATGGAGAG	8.1
5:24256794-24256995	site	oligos_6nt_test_vs_ctrl_m1	D	84	93	AAATGGAGGA	7.6
5:24803354-24803555	site	oligos_6nt_test_vs_ctrl_m1	D	17	26	AAATGGAGGT	7.6
5:30906550-30906751	site	oligos_6nt_test_vs_ctrl_m1	R	-38	-29	CTATGGAGCA	7.7
5:30906550-30906751	site	oligos_6nt_test_vs_ctrl_m1	R	82	91	AGATGGAGGG	7.8
5:32480694-32480895	site	oligos_6nt_test_vs_ctrl_m1	D	-62	-53	ATATGGAGGT	8.6
5:36615258-36615459	site	oligos_6nt_test_vs_ctrl_m1	R	6	15	GTATGGAGTT	8.0
5:45734110-45734311	site	oligos_6nt_test_vs_ctrl_m1	D	-100	-91	TGATGGAGGT	7.6
5:46414420-46414621	site	oligos_6nt_test_vs_ctrl_m1	D	35	44	AAATGGAGAT	7.7
5:72626952-72627153	site	oligos_6nt_test_vs_ctrl_m1	R	-57	-48	AGATGGAGAT	8.2
5:72914534-72914735	site	oligos_6nt_test_vs_ctrl_m1	D	-12	-3	GCATGGAGGA	7.6
5:88838541-88838742	site	oligos_6nt_test_vs_ctrl_m1	R	-52	-43	GCATGGAGGT	7.6
5:88838541-88838742	site	oligos_6nt_test_vs_ctrl_m1	R	2	11	ACATGGAGCT	7.7
5:91806539-91806740	site	oligos_6nt_test_vs_ctrl_m1	R	0	9	CCATGGAGCG	8.1
5:93187620-93187821	site	oligos_6nt_test_vs_ctrl_m1	R	-81	-72	AAATGGAGAA	7.7
5:122172769-122172970	site	oligos_6nt_test_vs_ctrl_m1	R	42	51	TTATGGAGAA	8.2
5:140760788-140760989	site	oligos_6nt_test_vs_ctrl_m1	D	-68	-59	TGATGGAGAC	7.6
5:140760788-140760989	site	oligos_6nt_test_vs_ctrl_m1	R	15	24	TCATGGAGGA	7.7
5:142905298-142905499	site	oligos_6nt_test_vs_ctrl_m1	R	-50	-41	ACATGGAGAA	8.2
5:146261012-146261213	site	oligos_6nt_test_vs_ctrl_m1	R	42	51	AGATGGAGTT	7.7
5:146575840-146576041	site	oligos_6nt_test_vs_ctrl_m1	D	-38	-29	CGATGGAGAC	8.6
5:146575840-146576041	site	oligos_6nt_test_vs_ctrl_m1	D	73	82	GCATGGAGGT	7.6
6:26933359-26933560	site	oligos_6nt_test_vs_ctrl_m1	R	3	12	ATATGGAGAA	8.7
6:35509200-35509401	site	oligos_6nt_test_vs_ctrl_m1	R	-59	-50	GTATGGAGGA	8.3
6:35509200-35509401	site	oligos_6nt_test_vs_ctrl_m1	R	-33	-24	AAATGGAGAA	7.7
6:37686746-37686947	site	oligos_6nt_test_vs_ctrl_m1	R	31	40	CGATGGAGAG	8.6
6:46529892-46530093	site	oligos_6nt_test_vs_ctrl_m1	D	-78	-69	ACATGGAGTG	7.8
6:47045692-47045893	site	oligos_6nt_test_vs_ctrl_m1	D	-10	-1	AAATGGAGAA	7.7
6:48524866-48525067	site	oligos_6nt_test_vs_ctrl_m1	R	-2	7	TAATGGAGGG	7.6
6:58017742-58017943	site	oligos_6nt_test_vs_ctrl_m1	R	17	26	TGATGGAGAA	7.7
6:75297539-75297740	site	oligos_6nt_test_vs_ctrl_m1	D	53	62	CCATGGAGGA	7.5
6:83601197-83601398	site	oligos_6nt_test_vs_ctrl_m1	R	46	55	CTATGGAGGC	7.6
6:84812506-84812707	site	oligos_6nt_test_vs_ctrl_m1	D	-57	-48	CCATGGAGAA	7.6
6:85844241-85844442	site	oligos_6nt_test_vs_ctrl_m1	D	60	69	AGATGGAGCA	7.7
6:87948433-87948634	site	oligos_6nt_test_vs_ctrl_m1	R	8	17	AGATGGAGGC	7.6
6:88578208-88578409	site	oligos_6nt_test_vs_ctrl_m1	D	37	46	TTATGGAGGC	7.7
6:93137662-93137863	site	oligos_6nt_test_vs_ctrl_m1	R	-89	-80	CCATGGAGAA	7.6
6:95141818-95142019	site	oligos_6nt_test_vs_ctrl_m1	R	78	87	ATATGGAGAA	8.7
6:96032919-96033120	site	oligos_6nt_test_vs_ctrl_m1	R	27	36	TGATGGAGAT	7.8
6:99877814-99878015	site	oligos_6nt_test_vs_ctrl_m1	R	-92	-83	AGATGGAGAA	8.1
6:108882223-108882424	site	oligos_6nt_test_vs_ctrl_m1	D	69	78	ACATGGAGAA	8.2
6:113153052-113153253	site	oligos_6nt_test_vs_ctrl_m1	R	-14	-5	AAATGGAGAG	7.5
6:113447378-113447579	site	oligos_6nt_test_vs_ctrl_m1	R	-7	2	TCATGGAGAG	7.6
6:113447378-113447579	site	oligos_6nt_test_vs_ctrl_m1	R	17	26	CGATGGAGAA	8.7
6:113447378-113447579	site	oligos_6nt_test_vs_ctrl_m1	D	45	54	GCATGGAGAT	7.8
6:122644459-122644660	site	oligos_6nt_test_vs_ctrl_m1	D	-59	-50	CCATGGAGAA	7.6
6:122698827-122699028	site	oligos_6nt_test_vs_ctrl_m1	R	64	73	CTATGGAGGA	8.0
6:124811331-124811532	site	oligos_6nt_test_vs_ctrl_m1	R	83	92	TTATGGAGGT	8.0
6:126879595-126879796	site	oligos_6nt_test_vs_ctrl_m1	R	30	39	ACATGGAGTG	7.8
7:5128988-5129189	site	oligos_6nt_test_vs_ctrl_m1	R	45	54	ACATGGAGAA	8.2
7:11845439-11845640	site	oligos_6nt_test_vs_ctrl_m1	D	22	31	GGATGGAGAG	7.7
7:16499029-16499230	site	oligos_6nt_test_vs_ctrl_m1	D	40	49	TGATGGAGAA	7.7
7:16917046-16917247	site	oligos_6nt_test_vs_ctrl_m1	R	-53	-44	TGATGGAGAT	7.8
7:23357598-23357799	site	oligos_6nt_test_vs_ctrl_m1	D	6	15	AGATGGAGAA	8.1
7:39589112-39589313	site	oligos_6nt_test_vs_ctrl_m1	R	-91	-82	AGATGGAGAC	8.0
7:39589610-39589811	site	oligos_6nt_test_vs_ctrl_m1	D	-7	2	ACATGGAGTT	7.8
7:42020738-42020939	site	oligos_6nt_test_vs_ctrl_m1	R	-88	-79	CTATGGAGCT	7.5
7:59276223-59276424	site	oligos_6nt_test_vs_ctrl_m1	D	-58	-49	TAATGGAGAA	7.9
7:73541424-73541625	site	oligos_6nt_test_vs_ctrl_m1	D	-64	-55	AAATGGAGGT	7.6
7:79790241-79790442	site	oligos_6nt_test_vs_ctrl_m1	R	38	47	ATATGGAGAA	8.7
7:97595219-97595420	site	oligos_6nt_test_vs_ctrl_m1	R	85	94	CTATGGAGGA	8.0
7:100264911-100265112	site	oligos_6nt_test_vs_ctrl_m1	D	82	91	ATATGGAGTC	8.2
7:104748147-104748348	site	oligos_6nt_test_vs_ctrl_m1	R	62	71	GCATGGAGGA	7.6
7:119740647-119740848	site	oligos_6nt_test_vs_ctrl_m1	D	-76	-67	CTATGGAGCA	7.7
7:119740647-119740848	site	oligos_6nt_test_vs_ctrl_m1	R	83	92	TTATGGAGAA	8.2
7:123170342-123170543	site	oligos_6nt_test_vs_ctrl_m1	D	24	33	TAATGGAGAG	7.8
7:126492092-126492293	site	oligos_6nt_test_vs_ctrl_m1	D	-61	-52	TCATGGAGGT	7.6
7:132998815-132999016	site	oligos_6nt_test_vs_ctrl_m1	D	76	85	CCATGGAGAT	7.7
8:3995673-3995874	site	oligos_6nt_test_vs_ctrl_m1	R	-71	-62	ATATGGAGAT	8.7
8:4040161-4040362	site	oligos_6nt_test_vs_ctrl_m1	D	-96	-87	GGATGGAGAG	7.7
8:4088349-4088550	site	oligos_6nt_test_vs_ctrl_m1	D	-17	-8	TCATGGAGAT	7.8
8:33615460-33615661	site	oligos_6nt_test_vs_ctrl_m1	R	-88	-79	GGATGGAGAC	7.7
8:46229099-46229300	site	oligos_6nt_test_vs_ctrl_m1	D	34	43	ACATGGAGAA	8.2
8:61121319-61121520	site	oligos_6nt_test_vs_ctrl_m1	R	-28	-19	GAATGGAGAT	7.5
8:72304838-72305039	site	oligos_6nt_test_vs_ctrl_m1	R	21	30	AAATGGAGAT	7.7
8:78505746-78505947	site	oligos_6nt_test_vs_ctrl_m1	R	-43	-34	TTATGGAGGA	8.1
8:80111162-80111363	site	oligos_6nt_test_vs_ctrl_m1	R	-3	6	ATATGGAGAG	8.6
8:92360510-92360711	site	oligos_6nt_test_vs_ctrl_m1	R	-99	-90	GCATGGAGAG	7.6
8:100031214-100031415	site	oligos_6nt_test_vs_ctrl_m1	R	77	86	AGATGGAGTT	7.7
8:107339009-107339210	site	oligos_6nt_test_vs_ctrl_m1	D	23	32	GGATGGAGGA	7.7
8:122683641-122683842	site	oligos_6nt_test_vs_ctrl_m1	R	-18	-9	TTATGGAGCA	7.7
8:123421397-123421598	site	oligos_6nt_test_vs_ctrl_m1	D	45	54	AGATGGAGTT	7.7
8:123893251-123893452	site	oligos_6nt_test_vs_ctrl_m1	R	-9	0	ACATGGAGAA	8.2
8:125995539-125995740	site	oligos_6nt_test_vs_ctrl_m1	D	80	89	TTATGGAGTG	7.7
9:47466142-47466343	site	oligos_6nt_test_vs_ctrl_m1	D	-73	-64	AGATGGAGCA	7.7
9:71844372-71844573	site	oligos_6nt_test_vs_ctrl_m1	R	28	37	CTATGGAGTA	8.4
9:78175375-78175576	site	oligos_6nt_test_vs_ctrl_m1	D	46	55	ACATGGAGCG	8.7
9:78820865-78821066	site	oligos_6nt_test_vs_ctrl_m1	R	-89	-80	ATATGGAGAA	8.7
9:84973923-84974124	site	oligos_6nt_test_vs_ctrl_m1	R	-28	-19	GCATGGAGAC	7.6
9:91098357-91098558	site	oligos_6nt_test_vs_ctrl_m1	D	-79	-70	GCATGGAGGA	7.6
9:98577277-98577478	site	oligos_6nt_test_vs_ctrl_m1	D	63	72	AGATGGAGAA	8.1
9:100497751-100497952	site	oligos_6nt_test_vs_ctrl_m1	R	-68	-59	TCATGGAGAA	7.8
9:107616175-107616376	site	oligos_6nt_test_vs_ctrl_m1	D	-40	-31	TGATGGAGGT	7.6
9:113958757-113958958	site	oligos_6nt_test_vs_ctrl_m1	D	11	20	AGATGGAGAA	8.1
9:118837629-118837830	site	oligos_6nt_test_vs_ctrl_m1	R	-18	-9	ATATGGAGAA	8.7
9:120957442-120957643	site	oligos_6nt_test_vs_ctrl_m1	R	-36	-27	CTATGGAGAA	8.1
X:13156341-13156542	site	oligos_6nt_test_vs_ctrl_m1	D	-77	-68	TGATGGAGAT	7.8
X:13169423-13169624	site	oligos_6nt_test_vs_ctrl_m1	D	68	77	ACATGGAGTG	7.8
X:13179532-13179733	site	oligos_6nt_test_vs_ctrl_m1	D	55	64	ACATGGAGTG	7.8
X:13189605-13189806	site	oligos_6nt_test_vs_ctrl_m1	D	77	86	ACATGGAGTG	7.8
X:13203599-13203800	site	oligos_6nt_test_vs_ctrl_m1	D	13	22	CCATGGAGGA	7.5
X:18254359-18254560	site	oligos_6nt_test_vs_ctrl_m1	D	-91	-82	CCATGGAGAT	7.7
X:33581522-33581723	site	oligos_6nt_test_vs_ctrl_m1	D	86	95	TGATGGAGCG	8.2
X:38193419-38193620	site	oligos_6nt_test_vs_ctrl_m1	D	-84	-75	TAATGGAGGG	7.6
X:38631489-38631690	site	oligos_6nt_test_vs_ctrl_m1	R	-24	-15	GGATGGAGGA	7.7
X:51004277-51004478	site	oligos_6nt_test_vs_ctrl_m1	R	-95	-86	TTATGGAGGC	7.7
X:62775911-62776112	site	oligos_6nt_test_vs_ctrl_m1	R	65	74	CGATGGAGGC	8.2
X:74171692-74171893	site	oligos_6nt_test_vs_ctrl_m1	D	3	12	CCATGGAGGA	7.5
X:74225060-74225261	site	oligos_6nt_test_vs_ctrl_m1	D	-67	-58	TGATGGAGAT	7.8
X:74261135-74261336	site	oligos_6nt_test_vs_ctrl_m1	D	33	42	ATATGGAGAA	8.7
X:75987173-75987374	site	oligos_6nt_test_vs_ctrl_m1	D	-22	-13	TGATGGAGAA	7.7
X:81822322-81822523	site	oligos_6nt_test_vs_ctrl_m1	R	24	33	TTATGGAGCA	7.7
X:94078745-94078946	site	oligos_6nt_test_vs_ctrl_m1	D	60	69	GAATGGAGAT	7.5
X:101768947-101769148	site	oligos_6nt_test_vs_ctrl_m1	D	-7	2	AGATGGAGAA	8.1
X:126750631-126750832	site	oligos_6nt_test_vs_ctrl_m1	D	-76	-67	AAATGGAGGA	7.6
X:133094454-133094655	site	oligos_6nt_test_vs_ctrl_m1	D	-84	-75	GTATGGAGGC	7.9
X:136271361-136271562	site	oligos_6nt_test_vs_ctrl_m1	D	53	62	AGATGGAGAT	8.2
X:136271361-136271562	site	oligos_6nt_test_vs_ctrl_m1	D	76	85	TCATGGAGGA	7.7
X:139968299-139968500	site	oligos_6nt_test_vs_ctrl_m1	D	-35	-26	ACATGGAGCC	7.5
X:141980390-141980591	site	oligos_6nt_test_vs_ctrl_m1	R	36	45	TCATGGAGAT	7.8
X:142211516-142211717	site	oligos_6nt_test_vs_ctrl_m1	D	34	43	TCATGGAGGA	7.7
X:151907233-151907434	site	oligos_6nt_test_vs_ctrl_m1	R	-84	-75	AGATGGAGAA	8.1
X:152027775-152027976	site	oligos_6nt_test_vs_ctrl_m1	D	21	30	GGATGGAGGA	7.7
;
; Matrices
;	matrix	name                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_test_vs_ctrl_m1	10	4	0	-32.100	8.800	40.900	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                      	matches	scored
;	1	oligos_6nt_test_vs_ctrl_m1	352	0
;		TOTAL          	352	0
; Host name	rsat
; Job started	2025-09-18.095847
; Job done	2025-09-18.095848
; Seconds	0.27
;	user	0.27
;	system	0.03
;	cuser	0.1
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:6247971-6248172	site	oligos_7nt_test_vs_ctrl_m1	D	-37	-27	TAGAAACTAAA	8.9
1:46193630-46193831	site	oligos_7nt_test_vs_ctrl_m1	D	-38	-28	TAGAAACTACC	9.1
1:99524210-99524411	site	oligos_7nt_test_vs_ctrl_m1	R	-56	-46	AAGAAACTAGT	8.6
1:119787766-119787967	site	oligos_7nt_test_vs_ctrl_m1	D	67	77	AAGAAACTAGG	7.6
1:155845393-155845594	site	oligos_7nt_test_vs_ctrl_m1	R	-42	-32	TAGAAACTACA	9.5
1:177450518-177450719	site	oligos_7nt_test_vs_ctrl_m1	R	-32	-22	GTGAAACTAAG	7.8
10:39822406-39822607	site	oligos_7nt_test_vs_ctrl_m1	D	-28	-18	GTGAAACTAGG	7.7
10:115431878-115432079	site	oligos_7nt_test_vs_ctrl_m1	R	-33	-23	TGGAAACTAGT	8.2
11:50379468-50379669	site	oligos_7nt_test_vs_ctrl_m1	D	25	35	GAGAAACTATG	8.5
11:65688532-65688733	site	oligos_7nt_test_vs_ctrl_m1	R	76	86	TATAAACTATA	8.1
11:75070956-75071157	site	oligos_7nt_test_vs_ctrl_m1	R	-100	-90	AAGAAACTAGG	7.6
11:84832690-84832891	site	oligos_7nt_test_vs_ctrl_m1	D	23	33	ACGAAACTAAA	9.0
12:34385176-34385377	site	oligos_7nt_test_vs_ctrl_m1	D	71	81	GTTAAACTATA	7.5
12:40036117-40036318	site	oligos_7nt_test_vs_ctrl_m1	R	-19	-9	GAGAAACTACA	9.2
12:51768899-51769100	site	oligos_7nt_test_vs_ctrl_m1	D	33	43	CTGAAACTATA	9.2
12:105838741-105838942	site	oligos_7nt_test_vs_ctrl_m1	R	-75	-65	TGGAAACTAGA	8.0
12:109359254-109359455	site	oligos_7nt_test_vs_ctrl_m1	R	57	67	GAGAAACTAAT	8.8
13:63446963-63447164	site	oligos_7nt_test_vs_ctrl_m1	R	-3	7	ACGAAACTAGA	9.0
13:111718164-111718365	site	oligos_7nt_test_vs_ctrl_m1	D	52	62	GGGAAACTATT	8.9
14:37655439-37655640	site	oligos_7nt_test_vs_ctrl_m1	R	-98	-88	AAGAAACTAAA	8.5
15:71794713-71794914	site	oligos_7nt_test_vs_ctrl_m1	D	17	27	TATAAACTACG	7.7
15:102498532-102498733	site	oligos_7nt_test_vs_ctrl_m1	R	-55	-45	CAGAAACTACA	8.8
15:103244280-103244481	site	oligos_7nt_test_vs_ctrl_m1	R	69	79	CAGAAACTAAA	8.2
16:8843031-8843232	site	oligos_7nt_test_vs_ctrl_m1	D	49	59	CGGAAACTAGC	8.4
16:20656549-20656750	site	oligos_7nt_test_vs_ctrl_m1	R	41	51	ATGAAACTATA	9.7
16:30067583-30067784	site	oligos_7nt_test_vs_ctrl_m1	D	81	91	GAGAAAATATA	7.7
16:38243318-38243519	site	oligos_7nt_test_vs_ctrl_m1	R	47	57	TTAAAACTATA	7.7
17:10206843-10207044	site	oligos_7nt_test_vs_ctrl_m1	D	2	12	ATGAAACTACT	9.1
17:39636739-39636940	site	oligos_7nt_test_vs_ctrl_m1	D	-98	-88	CAGAAACTAAA	8.2
17:74702371-74702572	site	oligos_7nt_test_vs_ctrl_m1	D	-17	-7	AAGAAACTAAT	8.7
17:74702371-74702572	site	oligos_7nt_test_vs_ctrl_m1	D	13	23	CTGAAACTATA	9.2
17:78491587-78491788	site	oligos_7nt_test_vs_ctrl_m1	D	-50	-40	TGGAAACTACT	8.7
18:35860873-35861074	site	oligos_7nt_test_vs_ctrl_m1	D	-7	3	ACGAATCTATA	7.5
18:36610291-36610492	site	oligos_7nt_test_vs_ctrl_m1	D	13	23	TGGAAACTACG	8.9
18:90311815-90312016	site	oligos_7nt_test_vs_ctrl_m1	R	-28	-18	CAGAAACTACA	8.8
19:14561454-14561655	site	oligos_7nt_test_vs_ctrl_m1	D	54	64	GATAAACTATA	7.8
19:24550692-24550893	site	oligos_7nt_test_vs_ctrl_m1	R	-59	-49	GTGAAACTAAA	8.5
19:29809764-29809965	site	oligos_7nt_test_vs_ctrl_m1	R	-91	-81	ATGAAACTATT	9.2
19:39052767-39052968	site	oligos_7nt_test_vs_ctrl_m1	R	-56	-46	AGGAAACTATA	9.4
2:5961449-5961650	site	oligos_7nt_test_vs_ctrl_m1	R	-58	-48	CAGAAACTAAT	8.4
2:23224970-23225171	site	oligos_7nt_test_vs_ctrl_m1	D	48	58	AAGAAACTAGA	8.5
2:37374413-37374614	site	oligos_7nt_test_vs_ctrl_m1	D	11	21	CAGAAACTATT	8.8
2:72936978-72937179	site	oligos_7nt_test_vs_ctrl_m1	R	-29	-19	TAGAAACTAGA	8.9
2:103766550-103766751	site	oligos_7nt_test_vs_ctrl_m1	R	-41	-31	AGGAAACTATT	8.9
2:107309854-107310055	site	oligos_7nt_test_vs_ctrl_m1	R	-64	-54	ATGAAACTATA	9.7
2:122220088-122220289	site	oligos_7nt_test_vs_ctrl_m1	D	50	60	AAGAAACTAGG	7.6
2:155390752-155390953	site	oligos_7nt_test_vs_ctrl_m1	D	67	77	GTGAAACTAAT	8.8
2:156056391-156056592	site	oligos_7nt_test_vs_ctrl_m1	D	35	45	AGGAAACTAAA	8.2
2:156178847-156179048	site	oligos_7nt_test_vs_ctrl_m1	D	46	56	GTGAAACTACT	9.2
3:136935211-136935412	site	oligos_7nt_test_vs_ctrl_m1	D	86	96	AATAAACTATA	7.7
4:74303168-74303369	site	oligos_7nt_test_vs_ctrl_m1	D	9	19	TTGAAACTATT	8.8
4:80534466-80534667	site	oligos_7nt_test_vs_ctrl_m1	D	-62	-52	GTGAAACTATA	9.7
4:135867227-135867428	site	oligos_7nt_test_vs_ctrl_m1	D	64	74	TGGAAACTAAT	8.3
5:45692954-45693155	site	oligos_7nt_test_vs_ctrl_m1	D	56	66	AGGAAACTAGA	8.2
5:92187897-92188098	site	oligos_7nt_test_vs_ctrl_m1	D	-54	-44	GAGAAACTAAA	8.6
5:92187897-92188098	site	oligos_7nt_test_vs_ctrl_m1	D	-3	7	GAGAAACTAGG	7.8
5:109543469-109543670	site	oligos_7nt_test_vs_ctrl_m1	D	-45	-35	TTGAAACTATA	9.4
6:6351040-6351241	site	oligos_7nt_test_vs_ctrl_m1	D	-56	-46	CAGAAACTAAA	8.2
6:31475433-31475634	site	oligos_7nt_test_vs_ctrl_m1	R	-40	-30	TATAAACTATA	8.1
6:31475433-31475634	site	oligos_7nt_test_vs_ctrl_m1	R	-33	-23	TATAAACTATA	8.1
6:71683735-71683936	site	oligos_7nt_test_vs_ctrl_m1	D	-92	-82	AAGAAACTACT	9.1
6:134541666-134541867	site	oligos_7nt_test_vs_ctrl_m1	R	-17	-7	CTGAAACTAAT	8.2
6:134924326-134924527	site	oligos_7nt_test_vs_ctrl_m1	R	60	70	TAAAAACTATA	7.8
7:7062290-7062491	site	oligos_7nt_test_vs_ctrl_m1	R	-20	-10	ATAAAACTATA	8.0
7:10656593-10656794	site	oligos_7nt_test_vs_ctrl_m1	R	-52	-42	AAGAAACTAGT	8.6
7:61070404-61070605	site	oligos_7nt_test_vs_ctrl_m1	D	-77	-67	GTGAAACTAAA	8.5
7:89509699-89509900	site	oligos_7nt_test_vs_ctrl_m1	R	-69	-59	AGGAAACTACC	8.5
8:111309947-111310148	site	oligos_7nt_test_vs_ctrl_m1	R	44	54	CGGACACTATA	7.6
8:112013923-112014124	site	oligos_7nt_test_vs_ctrl_m1	R	78	88	TGGAAACTATA	9.3
8:122841790-122841991	site	oligos_7nt_test_vs_ctrl_m1	D	8	18	AAGAAACTAGT	8.6
9:31053329-31053530	site	oligos_7nt_test_vs_ctrl_m1	D	-80	-70	GGGAAACTAAA	8.2
9:83409687-83409888	site	oligos_7nt_test_vs_ctrl_m1	D	-70	-60	CGGACACTATA	7.6
9:118837629-118837830	site	oligos_7nt_test_vs_ctrl_m1	R	46	56	AAGAAACTAGT	8.6
X:15365322-15365523	site	oligos_7nt_test_vs_ctrl_m1	D	34	44	CAGAAACTACA	8.8
X:74261135-74261336	site	oligos_7nt_test_vs_ctrl_m1	D	-32	-22	AAGAAACTAGT	8.6
X:88971143-88971344	site	oligos_7nt_test_vs_ctrl_m1	D	-55	-45	GGGAAACTACA	8.8
X:106992710-106992911	site	oligos_7nt_test_vs_ctrl_m1	R	88	98	GGGAAACTACA	8.8
;
; Matrices
;	matrix	name                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_test_vs_ctrl_m1	11	4	0	-16.000	9.300	25.300	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                      	matches	scored
;	1	oligos_7nt_test_vs_ctrl_m1	77	0
;		TOTAL          	77	0
; Host name	rsat
; Job started	2025-09-18.095849
; Job done	2025-09-18.095849
; Seconds	0.27
;	user	0.27
;	system	0
;	cuser	0.1
;	csystem	0.02
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:110177455-110177656	site	oligos_7nt_test_vs_ctrl_m2	R	-80	-70	GCCTCACAAGC	7.6
1:177450518-177450719	site	oligos_7nt_test_vs_ctrl_m2	R	-59	-49	CACTCACAATG	8.1
1:178328353-178328554	site	oligos_7nt_test_vs_ctrl_m2	D	-15	-5	GACTCACAATT	8.5
1:178332080-178332281	site	oligos_7nt_test_vs_ctrl_m2	D	-90	-80	ACCTCACAATC	8.4
1:191909656-191909857	site	oligos_7nt_test_vs_ctrl_m2	R	-9	1	GACTCACAAAG	8.0
10:49592968-49593169	site	oligos_7nt_test_vs_ctrl_m2	D	-92	-82	GTCTCACAAGA	8.2
10:69019628-69019829	site	oligos_7nt_test_vs_ctrl_m2	D	-92	-82	GGCTCACAACC	8.1
10:99758732-99758933	site	oligos_7nt_test_vs_ctrl_m2	R	-50	-40	CTCTCACAAGA	7.9
10:126324975-126325176	site	oligos_7nt_test_vs_ctrl_m2	R	-92	-82	AGCTCACAAGA	7.6
11:6467663-6467864	site	oligos_7nt_test_vs_ctrl_m2	D	83	93	GTCTCACAATT	8.4
11:23296693-23296894	site	oligos_7nt_test_vs_ctrl_m2	R	4	14	GGCTCACAAAT	7.7
11:30100091-30100292	site	oligos_7nt_test_vs_ctrl_m2	D	2	12	GCCTCACAAAA	7.9
11:65688532-65688733	site	oligos_7nt_test_vs_ctrl_m2	D	-28	-18	AGCTCACAATG	7.6
11:75724927-75725128	site	oligos_7nt_test_vs_ctrl_m2	D	55	65	GGCTCACAACC	8.1
11:80394288-80394489	site	oligos_7nt_test_vs_ctrl_m2	D	84	94	CACTCACAACC	8.5
11:86711426-86711627	site	oligos_7nt_test_vs_ctrl_m2	R	-22	-12	TACTCACAATG	8.7
11:94292298-94292499	site	oligos_7nt_test_vs_ctrl_m2	D	57	67	CGCTCACAACA	9.0
11:101321863-101322064	site	oligos_7nt_test_vs_ctrl_m2	R	-69	-59	GACTCACAAAG	8.0
11:107917321-107917522	site	oligos_7nt_test_vs_ctrl_m2	D	22	32	GGCTCACAACC	8.1
13:23747003-23747204	site	oligos_7nt_test_vs_ctrl_m2	D	80	90	GGCTCACAACA	8.1
13:70006887-70007088	site	oligos_7nt_test_vs_ctrl_m2	D	85	95	CACTCACAATC	8.7
13:104430996-104431197	site	oligos_7nt_test_vs_ctrl_m2	R	-50	-40	TGCTCACAATG	7.6
13:119775964-119776165	site	oligos_7nt_test_vs_ctrl_m2	D	-38	-28	TTCTCACAATG	7.9
14:52097293-52097494	site	oligos_7nt_test_vs_ctrl_m2	R	32	42	CCCTCACAAAC	8.0
14:66967885-66968086	site	oligos_7nt_test_vs_ctrl_m2	R	65	75	GACTCACAAAG	8.0
14:74223619-74223820	site	oligos_7nt_test_vs_ctrl_m2	D	76	86	ATCTCACAACT	8.2
15:48617935-48618136	site	oligos_7nt_test_vs_ctrl_m2	R	12	22	AACTCACAATC	8.7
15:73407648-73407849	site	oligos_7nt_test_vs_ctrl_m2	R	-58	-48	TCCTCACAATA	8.9
15:74081163-74081364	site	oligos_7nt_test_vs_ctrl_m2	R	-32	-22	AGCTCACAACA	8.0
15:93412881-93413082	site	oligos_7nt_test_vs_ctrl_m2	R	-22	-12	GACTCACAAGG	7.7
15:100619461-100619662	site	oligos_7nt_test_vs_ctrl_m2	D	-15	-5	TTCTCACAATG	7.9
16:20654882-20655083	site	oligos_7nt_test_vs_ctrl_m2	D	-57	-47	GGCTCACAATG	7.7
16:23113303-23113504	site	oligos_7nt_test_vs_ctrl_m2	R	66	76	TCCTCACAAGA	7.8
17:78491587-78491788	site	oligos_7nt_test_vs_ctrl_m2	D	4	14	GACTCACAATT	8.5
18:42071288-42071489	site	oligos_7nt_test_vs_ctrl_m2	R	87	97	GGCTCACAACC	8.1
18:85848456-85848657	site	oligos_7nt_test_vs_ctrl_m2	R	52	62	GACTCACAATT	8.5
2:9041229-9041430	site	oligos_7nt_test_vs_ctrl_m2	D	38	48	TTCTCACAAAA	8.1
2:24992711-24992912	site	oligos_7nt_test_vs_ctrl_m2	D	78	88	AACTCACAAGG	7.5
2:25223158-25223359	site	oligos_7nt_test_vs_ctrl_m2	D	23	33	TTCTCACAACG	8.8
2:60270160-60270361	site	oligos_7nt_test_vs_ctrl_m2	D	-9	1	AGCTCACAACC	8.0
2:87393719-87393920	site	oligos_7nt_test_vs_ctrl_m2	D	-36	-26	CTCTCACAACA	8.3
2:90905786-90905987	site	oligos_7nt_test_vs_ctrl_m2	D	47	57	GGCTCACAACC	8.1
2:155421148-155421349	site	oligos_7nt_test_vs_ctrl_m2	R	89	99	GCCTCACAAGC	7.6
3:5415285-5415486	site	oligos_7nt_test_vs_ctrl_m2	D	-100	-90	CTCTCACAAAA	8.1
3:9264662-9264863	site	oligos_7nt_test_vs_ctrl_m2	D	88	98	TGCTCACAAGC	7.5
3:152427792-152427993	site	oligos_7nt_test_vs_ctrl_m2	R	-55	-45	TTCTCACAATC	8.5
4:74303168-74303369	site	oligos_7nt_test_vs_ctrl_m2	D	81	91	ACCTCACAAAT	7.9
4:87841073-87841274	site	oligos_7nt_test_vs_ctrl_m2	R	41	51	GCCTCACAAAT	7.8
4:129839492-129839693	site	oligos_7nt_test_vs_ctrl_m2	D	43	53	AACTCACAACC	8.5
4:141522189-141522390	site	oligos_7nt_test_vs_ctrl_m2	R	-7	3	AGCTCACAACT	7.7
5:7179566-7179767	site	oligos_7nt_test_vs_ctrl_m2	R	51	61	TTCTCACAACG	8.8
5:40372512-40372713	site	oligos_7nt_test_vs_ctrl_m2	D	-76	-66	GACTCACAAAA	8.5
5:90132313-90132514	site	oligos_7nt_test_vs_ctrl_m2	D	39	49	GACTCATAATA	7.6
5:108085485-108085686	site	oligos_7nt_test_vs_ctrl_m2	R	70	80	GGCTCACAACC	8.1
6:31475433-31475634	site	oligos_7nt_test_vs_ctrl_m2	D	82	92	GGCTCACAACC	8.1
6:98173003-98173204	site	oligos_7nt_test_vs_ctrl_m2	D	74	84	CCCTCACAATA	8.8
7:4794350-4794551	site	oligos_7nt_test_vs_ctrl_m2	R	-66	-56	AGCTCACAAAC	7.9
7:67268254-67268455	site	oligos_7nt_test_vs_ctrl_m2	D	11	21	CTCTCACAACC	8.3
7:90444189-90444390	site	oligos_7nt_test_vs_ctrl_m2	D	75	85	GCCTCACAACC	8.1
7:100640717-100640918	site	oligos_7nt_test_vs_ctrl_m2	R	-9	1	ATCTCACAATA	9.2
7:123002201-123002402	site	oligos_7nt_test_vs_ctrl_m2	R	19	29	AACTCACAATT	8.3
8:25640813-25641014	site	oligos_7nt_test_vs_ctrl_m2	D	-91	-81	CGCTCACAAAT	8.7
8:27500775-27500976	site	oligos_7nt_test_vs_ctrl_m2	R	-64	-54	TACTCACAACA	9.2
8:80111162-80111363	site	oligos_7nt_test_vs_ctrl_m2	D	-57	-47	ACCTCACAACC	8.2
9:66372298-66372499	site	oligos_7nt_test_vs_ctrl_m2	R	6	16	AGCTCACAACT	7.7
9:71844372-71844573	site	oligos_7nt_test_vs_ctrl_m2	D	19	29	CTCTCACAATA	9.0
9:78820865-78821066	site	oligos_7nt_test_vs_ctrl_m2	R	-59	-49	AGCTCACAATG	7.6
X:13161330-13161531	site	oligos_7nt_test_vs_ctrl_m2	R	-32	-22	TTCTCACAAAT	8.0
X:103961653-103961854	site	oligos_7nt_test_vs_ctrl_m2	D	-72	-62	GGCTCACAAAA	7.9
X:139714265-139714466	site	oligos_7nt_test_vs_ctrl_m2	R	4	14	TCCTCACAAGC	7.6
X:156105357-156105558	site	oligos_7nt_test_vs_ctrl_m2	D	35	45	GTCTCACAAAA	8.4
;
; Matrices
;	matrix	name                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_test_vs_ctrl_m2	11	4	0	-19.100	9.400	28.500	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                      	matches	scored
;	1	oligos_7nt_test_vs_ctrl_m2	71	0
;		TOTAL          	71	0
; Host name	rsat
; Job started	2025-09-18.095850
; Job done	2025-09-18.095850
; Seconds	0.27
;	user	0.27
;	system	0
;	cuser	0.11
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:52187636-52187837	site	oligos_7nt_test_vs_ctrl_m3	D	-74	-64	CAGACTCTCCA	7.7
1:52187636-52187837	site	oligos_7nt_test_vs_ctrl_m3	D	25	35	GAGACTCTCAT	8.6
1:110177455-110177656	site	oligos_7nt_test_vs_ctrl_m3	D	-31	-21	AGGACTCTCCT	8.2
1:171340925-171341126	site	oligos_7nt_test_vs_ctrl_m3	D	54	64	CAGACTCTCTC	8.3
10:8601218-8601419	site	oligos_7nt_test_vs_ctrl_m3	D	7	17	GGGACTCTCAC	8.6
10:14746811-14747012	site	oligos_7nt_test_vs_ctrl_m3	R	-71	-61	ATGACTCTCAG	8.4
10:36997006-36997207	site	oligos_7nt_test_vs_ctrl_m3	R	80	90	TAGACTCTCCC	8.7
10:50700437-50700638	site	oligos_7nt_test_vs_ctrl_m3	R	72	82	CTGACTCTCAA	7.7
10:59950652-59950853	site	oligos_7nt_test_vs_ctrl_m3	R	-70	-60	TGGACTCTCGC	8.9
10:77652867-77653068	site	oligos_7nt_test_vs_ctrl_m3	D	45	55	AGGACTCTCAA	8.0
10:128047660-128047861	site	oligos_7nt_test_vs_ctrl_m3	R	-64	-54	GTGACTCTCGT	9.5
11:50207459-50207660	site	oligos_7nt_test_vs_ctrl_m3	R	82	92	TTGACTCTCCC	8.1
11:69998373-69998574	site	oligos_7nt_test_vs_ctrl_m3	D	68	78	AGGACTCTCTT	8.4
11:86733616-86733817	site	oligos_7nt_test_vs_ctrl_m3	D	-31	-21	GAGACTCTCCT	8.4
12:8499218-8499419	site	oligos_7nt_test_vs_ctrl_m3	R	38	48	CGGACTCTCTC	9.3
12:72048760-72048961	site	oligos_7nt_test_vs_ctrl_m3	R	63	73	TAGACTCTCTA	9.2
12:96922631-96922832	site	oligos_7nt_test_vs_ctrl_m3	D	52	62	GTGACTCTCGT	9.5
12:108737345-108737546	site	oligos_7nt_test_vs_ctrl_m3	R	-74	-64	AGGACTCTCTG	8.5
13:64996602-64996803	site	oligos_7nt_test_vs_ctrl_m3	D	-70	-60	GCGACTCTCTC	9.4
13:107787706-107787907	site	oligos_7nt_test_vs_ctrl_m3	R	-20	-10	GAGACTCTCTT	8.6
14:52205262-52205463	site	oligos_7nt_test_vs_ctrl_m3	R	80	90	AGGACTCTCTA	8.8
14:52237389-52237590	site	oligos_7nt_test_vs_ctrl_m3	R	23	33	TGGACTCTCTG	8.3
15:8290731-8290932	site	oligos_7nt_test_vs_ctrl_m3	R	-29	-19	CAGACTCTCCT	7.9
15:8351574-8351775	site	oligos_7nt_test_vs_ctrl_m3	R	-30	-20	TGGACTCTCAG	8.1
15:12118094-12118295	site	oligos_7nt_test_vs_ctrl_m3	D	21	31	CTGACTCTCCG	9.0
15:30094979-30095180	site	oligos_7nt_test_vs_ctrl_m3	D	-25	-15	GCGACTCTCTC	9.4
15:66613091-66613292	site	oligos_7nt_test_vs_ctrl_m3	R	-34	-24	AAGACTCTCCA	8.0
16:87555714-87555915	site	oligos_7nt_test_vs_ctrl_m3	R	18	28	GAGACTCTCGG	9.3
17:12967533-12967734	site	oligos_7nt_test_vs_ctrl_m3	R	-1	9	TAGACTCTCCC	8.7
18:6111876-6112077	site	oligos_7nt_test_vs_ctrl_m3	R	-48	-38	CAGACTCTCAA	7.7
18:24014289-24014490	site	oligos_7nt_test_vs_ctrl_m3	D	-38	-28	TGGACTCTCTG	8.3
19:6975312-6975513	site	oligos_7nt_test_vs_ctrl_m3	D	75	85	GCGACTCTACG	7.8
19:11438375-11438576	site	oligos_7nt_test_vs_ctrl_m3	D	-56	-46	AAGACTCTCAG	8.3
19:53988077-53988278	site	oligos_7nt_test_vs_ctrl_m3	D	-13	-3	CTGACTCTCTT	8.1
19:53988077-53988278	site	oligos_7nt_test_vs_ctrl_m3	D	74	84	TAGACTCTCTC	9.0
2:18080702-18080903	site	oligos_7nt_test_vs_ctrl_m3	D	-88	-78	ATGACTCTCAT	8.6
2:26921920-26922121	site	oligos_7nt_test_vs_ctrl_m3	R	68	78	TTGACTCTCGT	9.0
2:45356984-45357185	site	oligos_7nt_test_vs_ctrl_m3	D	-75	-65	TGGACTCTCTA	8.6
2:72970852-72971053	site	oligos_7nt_test_vs_ctrl_m3	R	0	10	GGGACTCTCGG	9.2
2:90909544-90909745	site	oligos_7nt_test_vs_ctrl_m3	D	-12	-2	GGGACTCTCTA	8.9
3:22459990-22460191	site	oligos_7nt_test_vs_ctrl_m3	D	-89	-79	GCGACTCTCTC	9.4
3:101581952-101582153	site	oligos_7nt_test_vs_ctrl_m3	R	73	83	ATGACTCTCCA	8.2
3:104752665-104752866	site	oligos_7nt_test_vs_ctrl_m3	D	16	26	GTGACTCTCTT	8.7
4:48468336-48468537	site	oligos_7nt_test_vs_ctrl_m3	D	81	91	GTGACTCTCCG	9.5
4:95632907-95633108	site	oligos_7nt_test_vs_ctrl_m3	R	-79	-69	AAGACTCTCTC	8.6
4:129839492-129839693	site	oligos_7nt_test_vs_ctrl_m3	D	62	72	GCGACTCTCAA	8.8
5:31204449-31204650	site	oligos_7nt_test_vs_ctrl_m3	R	54	64	GAGACTCTCGC	9.2
5:31243848-31244049	site	oligos_7nt_test_vs_ctrl_m3	R	68	78	TTGACTCTCCC	8.1
5:115272266-115272467	site	oligos_7nt_test_vs_ctrl_m3	D	-98	-88	TAGACTCGCCG	7.8
5:124885913-124886114	site	oligos_7nt_test_vs_ctrl_m3	R	-71	-61	TGGACTCTCTG	8.3
6:35512090-35512291	site	oligos_7nt_test_vs_ctrl_m3	R	-4	6	ATGACTCTCCT	8.4
6:75297539-75297740	site	oligos_7nt_test_vs_ctrl_m3	R	-42	-32	ATGACTCTCAG	8.4
6:126077119-126077320	site	oligos_7nt_test_vs_ctrl_m3	D	-95	-85	CAGACTCTCTG	8.2
7:15288912-15289113	site	oligos_7nt_test_vs_ctrl_m3	D	85	95	GCGACTCGCGG	7.9
7:112093166-112093367	site	oligos_7nt_test_vs_ctrl_m3	D	22	32	TTGACTCTCAC	8.3
7:123170342-123170543	site	oligos_7nt_test_vs_ctrl_m3	R	27	37	TTGACTCTCCA	7.8
7:131570215-131570416	site	oligos_7nt_test_vs_ctrl_m3	D	-99	-89	TAGACTCGCGG	7.5
9:72061081-72061282	site	oligos_7nt_test_vs_ctrl_m3	R	89	99	AGGACTCTCAA	8.0
9:85325034-85325235	site	oligos_7nt_test_vs_ctrl_m3	R	-69	-59	TAGACTCTCTT	8.9
X:152027775-152027976	site	oligos_7nt_test_vs_ctrl_m3	R	30	40	CTGACTCTCTT	8.1
X:164422883-164423084	site	oligos_7nt_test_vs_ctrl_m3	R	-59	-49	ATGACTCTCAG	8.4
X:164422883-164423084	site	oligos_7nt_test_vs_ctrl_m3	D	-29	-19	ACGACTCTCTT	9.4
;
; Matrices
;	matrix	name                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_test_vs_ctrl_m3	11	4	0	-15.400	9.400	24.800	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                      	matches	scored
;	1	oligos_7nt_test_vs_ctrl_m3	62	0
;		TOTAL          	62	0
; Host name	rsat
; Job started	2025-09-18.095851
; Job done	2025-09-18.095851
; Seconds	0.26
;	user	0.26
;	system	0.02
;	cuser	0.11
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:55015556-55015757	site	oligos_7nt_test_vs_ctrl_m4	D	61	71	TAATTCATGCA	8.0
1:55152813-55153014	site	oligos_7nt_test_vs_ctrl_m4	D	56	66	TTATTCATGAG	8.8
1:131935746-131935947	site	oligos_7nt_test_vs_ctrl_m4	R	85	95	TAATTCATGAA	8.6
1:180093957-180094158	site	oligos_7nt_test_vs_ctrl_m4	D	-30	-20	GAATTCATGGA	7.7
10:17723945-17724146	site	oligos_7nt_test_vs_ctrl_m4	R	83	93	GCATTCATGTT	8.4
10:57782302-57782503	site	oligos_7nt_test_vs_ctrl_m4	D	77	87	GGATTCATGTG	7.5
10:61691294-61691495	site	oligos_7nt_test_vs_ctrl_m4	D	-68	-58	GTATTCATGTG	9.1
10:82431448-82431649	site	oligos_7nt_test_vs_ctrl_m4	D	61	71	TCATTCATGGA	8.0
10:92542411-92542612	site	oligos_7nt_test_vs_ctrl_m4	R	58	68	TTATTCATGGT	8.9
10:128047660-128047861	site	oligos_7nt_test_vs_ctrl_m4	D	78	88	GTATTAATGTT	7.6
10:128084264-128084465	site	oligos_7nt_test_vs_ctrl_m4	R	51	61	ACATTCATGAT	8.8
11:20446647-20446848	site	oligos_7nt_test_vs_ctrl_m4	R	30	40	AAATTCATGCC	7.7
11:59212520-59212721	site	oligos_7nt_test_vs_ctrl_m4	D	52	62	GCATTCATGGC	7.8
11:86267032-86267233	site	oligos_7nt_test_vs_ctrl_m4	R	-94	-84	TTATTCATGAA	9.0
11:86711426-86711627	site	oligos_7nt_test_vs_ctrl_m4	R	6	16	GAATTCATGAG	7.8
11:94292298-94292499	site	oligos_7nt_test_vs_ctrl_m4	R	-3	7	GTATTCATGCC	8.8
12:35773186-35773387	site	oligos_7nt_test_vs_ctrl_m4	D	-4	6	GCATTCATGGA	7.8
12:52516456-52516657	site	oligos_7nt_test_vs_ctrl_m4	D	-44	-34	AAATTCATGTC	8.5
13:34074546-34074747	site	oligos_7nt_test_vs_ctrl_m4	D	-91	-81	TCATTCATGTT	8.5
13:64624414-64624615	site	oligos_7nt_test_vs_ctrl_m4	R	61	71	GGATTCATGTG	7.5
14:24070401-24070602	site	oligos_7nt_test_vs_ctrl_m4	R	20	30	AAATTCATGGT	8.0
14:52084144-52084345	site	oligos_7nt_test_vs_ctrl_m4	D	64	74	GAATTCATGGA	7.7
14:56959765-56959966	site	oligos_7nt_test_vs_ctrl_m4	D	-5	5	ATATTTATGAT	7.5
14:61367149-61367350	site	oligos_7nt_test_vs_ctrl_m4	R	-11	-1	ATATTCATGTT	9.6
14:98025102-98025303	site	oligos_7nt_test_vs_ctrl_m4	R	53	63	GCATTCATGTT	8.4
15:25840375-25840576	site	oligos_7nt_test_vs_ctrl_m4	R	-53	-43	GGATTCATGTG	7.5
15:36605720-36605921	site	oligos_7nt_test_vs_ctrl_m4	D	89	99	AAATTCATGGT	8.0
15:58899099-58899300	site	oligos_7nt_test_vs_ctrl_m4	D	47	57	GTATTAATGTC	7.7
15:59211518-59211719	site	oligos_7nt_test_vs_ctrl_m4	D	-77	-67	TAATTCATGAG	8.3
15:66613091-66613292	site	oligos_7nt_test_vs_ctrl_m4	R	-44	-34	AGATTCATGTT	8.0
15:101691305-101691506	site	oligos_7nt_test_vs_ctrl_m4	D	-58	-48	ACATTCATGAG	8.3
15:103241423-103241624	site	oligos_7nt_test_vs_ctrl_m4	R	0	10	GCATTCATGGC	7.8
17:72848725-72848926	site	oligos_7nt_test_vs_ctrl_m4	D	66	76	GGATTCATGAA	7.6
18:10070233-10070434	site	oligos_7nt_test_vs_ctrl_m4	D	45	55	GAATTCATGGC	7.7
18:27598833-27599034	site	oligos_7nt_test_vs_ctrl_m4	R	-80	-70	GCATTCATGGC	7.8
18:35591178-35591379	site	oligos_7nt_test_vs_ctrl_m4	D	3	13	TAATTCATGTA	9.3
18:36288773-36288974	site	oligos_7nt_test_vs_ctrl_m4	D	-50	-40	TAATTCATGCA	8.0
18:37652466-37652667	site	oligos_7nt_test_vs_ctrl_m4	D	-52	-42	ATATTCATGGA	9.1
18:39486078-39486279	site	oligos_7nt_test_vs_ctrl_m4	D	-10	0	GTATTCATGTC	9.5
18:54699050-54699251	site	oligos_7nt_test_vs_ctrl_m4	D	67	77	CCATTCATGCG	7.8
18:64449143-64449344	site	oligos_7nt_test_vs_ctrl_m4	D	-15	-5	GAATTCATGCG	8.3
18:79959278-79959479	site	oligos_7nt_test_vs_ctrl_m4	R	10	20	GCATTCATGGC	7.8
19:40622559-40622760	site	oligos_7nt_test_vs_ctrl_m4	D	-16	-6	GCATTCATGTT	8.4
2:19993021-19993222	site	oligos_7nt_test_vs_ctrl_m4	D	-17	-7	GCATTCATGTT	8.4
2:22589571-22589772	site	oligos_7nt_test_vs_ctrl_m4	D	58	68	ATATTCATGTC	9.7
2:70023480-70023681	site	oligos_7nt_test_vs_ctrl_m4	D	-100	-90	GGATTCATGAA	7.6
2:70023480-70023681	site	oligos_7nt_test_vs_ctrl_m4	D	-53	-43	ATATACATGGT	7.6
2:83986028-83986229	site	oligos_7nt_test_vs_ctrl_m4	D	-44	-34	CTATTCATGAC	8.7
2:115864230-115864431	site	oligos_7nt_test_vs_ctrl_m4	R	-98	-88	ACATTCATGCC	8.1
2:129750027-129750228	site	oligos_7nt_test_vs_ctrl_m4	D	-41	-31	GGATTCATGTG	7.5
2:143150772-143150973	site	oligos_7nt_test_vs_ctrl_m4	D	-76	-66	ATATTCATGTA	10.1
2:155226364-155226565	site	oligos_7nt_test_vs_ctrl_m4	R	83	93	ATATACATGTG	7.7
2:157168814-157169015	site	oligos_7nt_test_vs_ctrl_m4	R	7	17	GTATTCATGCT	8.7
3:5860459-5860660	site	oligos_7nt_test_vs_ctrl_m4	R	-68	-58	CCATTCATGCG	7.8
3:16214853-16215054	site	oligos_7nt_test_vs_ctrl_m4	R	24	34	TAATTCATGGA	8.3
3:51473525-51473726	site	oligos_7nt_test_vs_ctrl_m4	R	3	13	AAATTCATGCT	7.7
3:76042639-76042840	site	oligos_7nt_test_vs_ctrl_m4	R	45	55	TGATTCATGTG	7.5
3:90361374-90361575	site	oligos_7nt_test_vs_ctrl_m4	D	21	31	TCATTCATGTA	9.0
3:90361374-90361575	site	oligos_7nt_test_vs_ctrl_m4	R	24	34	ATATACATGAA	7.7
3:94984369-94984570	site	oligos_7nt_test_vs_ctrl_m4	R	81	91	ATATACATGTT	8.0
3:152186623-152186824	site	oligos_7nt_test_vs_ctrl_m4	R	-18	-8	TTATTCATGAA	9.0
4:51253379-51253580	site	oligos_7nt_test_vs_ctrl_m4	D	89	99	GAATTCATGCG	8.3
4:65376999-65377200	site	oligos_7nt_test_vs_ctrl_m4	R	-88	-78	GCATTCATGCC	7.7
4:132827945-132828146	site	oligos_7nt_test_vs_ctrl_m4	R	14	24	GCATTCATGGG	7.5
5:43286854-43287055	site	oligos_7nt_test_vs_ctrl_m4	D	43	53	TAATTCATGTG	8.5
5:92187897-92188098	site	oligos_7nt_test_vs_ctrl_m4	D	-67	-57	TTATTTATGTA	7.7
5:149660834-149661035	site	oligos_7nt_test_vs_ctrl_m4	R	-68	-58	TCATTCATGGC	8.0
6:9889897-9890098	site	oligos_7nt_test_vs_ctrl_m4	D	-100	-90	AAATTCATGAC	8.4
6:72434114-72434315	site	oligos_7nt_test_vs_ctrl_m4	D	-68	-58	AAATTCATGTC	8.5
6:98061195-98061396	site	oligos_7nt_test_vs_ctrl_m4	D	-37	-27	CAATTCATGTT	7.6
6:99877814-99878015	site	oligos_7nt_test_vs_ctrl_m4	R	-62	-52	CCATTCATGAT	7.8
6:99877814-99878015	site	oligos_7nt_test_vs_ctrl_m4	D	-5	5	GGATTCATGTT	7.8
6:117923852-117924053	site	oligos_7nt_test_vs_ctrl_m4	D	-93	-83	CAATTCATGAT	7.6
6:125114254-125114455	site	oligos_7nt_test_vs_ctrl_m4	R	46	56	TCATTCATGCC	7.9
7:3983871-3984072	site	oligos_7nt_test_vs_ctrl_m4	D	71	81	TTATACATGTT	7.6
7:12086297-12086498	site	oligos_7nt_test_vs_ctrl_m4	D	-82	-72	AAATTCATGAT	8.4
7:39589112-39589313	site	oligos_7nt_test_vs_ctrl_m4	D	-78	-68	GGATTCATGAA	7.6
7:39589112-39589313	site	oligos_7nt_test_vs_ctrl_m4	R	-75	-65	TTATTCATGAA	9.0
7:89509699-89509900	site	oligos_7nt_test_vs_ctrl_m4	D	14	24	CCATTCATGTC	7.9
7:90208138-90208339	site	oligos_7nt_test_vs_ctrl_m4	R	-92	-82	ATATTAATGTT	7.8
7:90444189-90444390	site	oligos_7nt_test_vs_ctrl_m4	R	-55	-45	ACATTCATGCT	8.1
7:97595219-97595420	site	oligos_7nt_test_vs_ctrl_m4	R	-76	-66	GGATTCATGTC	7.9
7:104501277-104501478	site	oligos_7nt_test_vs_ctrl_m4	R	-95	-85	ATATTAATGTT	7.8
7:104501277-104501478	site	oligos_7nt_test_vs_ctrl_m4	D	-49	-39	TCATTCATGTC	8.6
7:121015324-121015525	site	oligos_7nt_test_vs_ctrl_m4	R	24	34	GGATTCATGTG	7.5
8:42247126-42247327	site	oligos_7nt_test_vs_ctrl_m4	R	78	88	TAATTCATGCT	8.1
8:86725088-86725289	site	oligos_7nt_test_vs_ctrl_m4	R	-69	-59	CTATTCATGAG	8.2
8:94405600-94405801	site	oligos_7nt_test_vs_ctrl_m4	R	-94	-84	TCATTCATGTT	8.5
8:123421397-123421598	site	oligos_7nt_test_vs_ctrl_m4	R	71	81	TCATTCATGTT	8.5
9:62060319-62060520	site	oligos_7nt_test_vs_ctrl_m4	D	-33	-23	TTATTCATGAA	9.0
9:64716807-64717008	site	oligos_7nt_test_vs_ctrl_m4	R	-8	2	CTATTCATGTT	8.6
9:75397910-75398111	site	oligos_7nt_test_vs_ctrl_m4	R	84	94	ACATTCATGGC	8.3
9:79771266-79771467	site	oligos_7nt_test_vs_ctrl_m4	D	-45	-35	ATATTTATGAT	7.5
9:96895818-96896019	site	oligos_7nt_test_vs_ctrl_m4	D	-87	-77	GGATTCATGTG	7.5
9:123689840-123690041	site	oligos_7nt_test_vs_ctrl_m4	D	31	41	GCATTCATGGC	7.8
X:15366229-15366430	site	oligos_7nt_test_vs_ctrl_m4	R	53	63	ATATACATGAA	7.7
X:33605031-33605232	site	oligos_7nt_test_vs_ctrl_m4	R	65	75	TAATTCATGAA	8.6
X:47809930-47810131	site	oligos_7nt_test_vs_ctrl_m4	R	-70	-60	GTATTCATGGT	9.1
X:51005059-51005260	site	oligos_7nt_test_vs_ctrl_m4	R	5	15	ACATTCATGTG	8.5
X:101768947-101769148	site	oligos_7nt_test_vs_ctrl_m4	D	-38	-28	CCATTCATGAT	7.8
X:141980390-141980591	site	oligos_7nt_test_vs_ctrl_m4	D	3	13	GCATTCATGGA	7.8
X:142211516-142211717	site	oligos_7nt_test_vs_ctrl_m4	D	30	40	TTATTCATGGA	8.8
X:151919646-151919847	site	oligos_7nt_test_vs_ctrl_m4	R	-15	-5	ACATTCATGTT	8.8
X:154774722-154774923	site	oligos_7nt_test_vs_ctrl_m4	D	-84	-74	TCATTCATGCT	7.8
;
; Matrices
;	matrix	name                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_test_vs_ctrl_m4	11	4	0	-16.600	9.400	26.000	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                      	matches	scored
;	1	oligos_7nt_test_vs_ctrl_m4	104	0
;		TOTAL          	104	0
; Host name	rsat
; Job started	2025-09-18.095852
; Job done	2025-09-18.095852
; Seconds	0.29
;	user	0.29
;	system	0.02
;	cuser	0.07
;	csystem	0.02
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:55760127-55760328	site	dyads_test_vs_ctrl_m1	R	6	34	ATTCTAAATCGTACCCTTATACTCTCAGA	7.6
1:60692064-60692265	site	dyads_test_vs_ctrl_m1	R	29	57	TTCCATTGGTCTACTTGTCTGTCTCTATA	8.1
1:86530380-86530581	site	dyads_test_vs_ctrl_m1	D	10	38	TTCCAGTAACTTTTGTGTATGTACCTAGC	8.6
1:114228420-114228621	site	dyads_test_vs_ctrl_m1	R	69	97	AAACTGCAGCCCAGGCTACTATACCCAGC	9.4
1:133659276-133659477	site	dyads_test_vs_ctrl_m1	D	55	83	TCTCTTTATTCGCTCCTTCTGCCACCATC	8.7
1:149343933-149344134	site	dyads_test_vs_ctrl_m1	R	-64	-36	AATCATTAACTATTATTTTTGTACTTATA	9.4
1:186968934-186969135	site	dyads_test_vs_ctrl_m1	R	49	77	TCTCAGAAGTAGACCCAACTCTTCCTACG	8.3
10:56497479-56497680	site	dyads_test_vs_ctrl_m1	R	-65	-37	CTTCATAGTTCATTGCTTCTGCCTCTACG	9.9
10:59807493-59807694	site	dyads_test_vs_ctrl_m1	R	7	35	TTTTAAAACCTTCTGCTACCATATCCACC	8.6
10:67185981-67186182	site	dyads_test_vs_ctrl_m1	D	-11	17	GTTCTGTGGTCTTGGCTTTTCTTCCTATA	9.0
10:73202476-73202677	site	dyads_test_vs_ctrl_m1	R	-88	-60	CTACCATATTGTCCTCTTCTTCCTCCATA	7.7
10:120923653-120923854	site	dyads_test_vs_ctrl_m1	D	29	57	ATACAGAAAGATTGGTTACTTTATATATT	9.7
10:129665038-129665239	site	dyads_test_vs_ctrl_m1	R	72	100	ACACATCAATCGTATCTTCATCCTCCATT	8.0
11:12142380-12142581	site	dyads_test_vs_ctrl_m1	R	11	39	AAATAGAAGTAGAAGGTACTCTACCCAAC	8.2
11:31934624-31934825	site	dyads_test_vs_ctrl_m1	D	-75	-47	CTTTGGTATAATATATTTACTTCTCCATA	7.8
11:53420947-53421148	site	dyads_test_vs_ctrl_m1	R	-94	-66	AGTTAGTATATAATACTTTGCTCACCATT	7.5
11:75703357-75703558	site	dyads_test_vs_ctrl_m1	R	-84	-56	TCACATTAATCTTCGTAACCTTTACCAGC	10.0
11:77294068-77294269	site	dyads_test_vs_ctrl_m1	R	58	86	CATCAGACTCCTTTTCTTCTTTTTCTTTA	7.8
11:77709708-77709909	site	dyads_test_vs_ctrl_m1	D	53	81	ATATACAAATATATATATATATATACATA	8.1
11:77709708-77709909	site	dyads_test_vs_ctrl_m1	D	55	83	ATACAAATATATATATATATATACATATA	8.4
11:93945469-93945670	site	dyads_test_vs_ctrl_m1	R	-75	-47	CTACAAAACCTTATGTTATTAACCCCTCT	8.4
12:3109857-3110058	site	dyads_test_vs_ctrl_m1	R	-18	10	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
12:3109857-3110058	site	dyads_test_vs_ctrl_m1	R	20	48	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
12:8751261-8751462	site	dyads_test_vs_ctrl_m1	D	5	33	TACAAGCGGCCTTATGTACATTTCCCAAC	8.0
12:10154084-10154285	site	dyads_test_vs_ctrl_m1	R	71	99	GTTCATGTCGCTTTTGTTCTCTTCCCGAA	8.6
12:14929895-14930096	site	dyads_test_vs_ctrl_m1	R	39	67	AATAAATACAACCCGTTACTCTTCCTAGT	8.2
12:17233836-17234037	site	dyads_test_vs_ctrl_m1	R	36	64	ACAGAGAAACATTGGCTACTTTAACCACC	9.5
12:31007094-31007295	site	dyads_test_vs_ctrl_m1	R	4	32	TTTTTTAATTTTAACATACTGTCCCAATA	7.7
12:32850947-32851148	site	dyads_test_vs_ctrl_m1	D	-77	-49	TTTCAGTGATTTACCAGTCTGTTTCCAAC	9.9
12:51409614-51409815	site	dyads_test_vs_ctrl_m1	R	48	76	AAACAAAAAACCAAACTACTGTCCCCATA	11.7
12:53184222-53184423	site	dyads_test_vs_ctrl_m1	D	-40	-12	TATCTGAAACCTTGTAGTCTCTGACCAGC	9.4
12:67037108-67037309	site	dyads_test_vs_ctrl_m1	R	-75	-47	CTACAGTGGATTTGTATACTTTTTTCAAT	8.8
12:99047331-99047532	site	dyads_test_vs_ctrl_m1	R	48	76	TGTGCATACTCTGTAGTATTTTCCACACG	7.5
13:9668663-9668864	site	dyads_test_vs_ctrl_m1	R	-12	16	GTTGAGTACATGAGTTTTCTCTAACCAGT	9.0
13:75771987-75772188	site	dyads_test_vs_ctrl_m1	D	-30	-2	TATAAAAAGAGTAGATATATTTAACCATA	8.0
14:16413597-16413798	site	dyads_test_vs_ctrl_m1	R	-64	-36	CTTCCGTAAACCATAATAACTTAACCGTA	9.2
14:19417204-19417405	site	dyads_test_vs_ctrl_m1	R	-86	-58	CTACAGTGGACATTTCTACATTTTCGACC	7.7
14:19417204-19417405	site	dyads_test_vs_ctrl_m1	R	-48	-20	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
14:19417204-19417405	site	dyads_test_vs_ctrl_m1	R	68	96	TTTCTGTGATTTTCATTTTTCTCGCCATA	10.9
14:56956861-56957062	site	dyads_test_vs_ctrl_m1	D	-34	-6	TTTGAATACCCTATTCTACTTTAACACTA	8.8
14:112132278-112132479	site	dyads_test_vs_ctrl_m1	R	62	90	AAACTGCAGCCCAGGCTACTATACCCAGC	9.4
15:8351574-8351775	site	dyads_test_vs_ctrl_m1	R	-60	-32	CTTCTATAACTCAGGATTCAGACTCCATA	7.7
15:36771668-36771869	site	dyads_test_vs_ctrl_m1	D	-62	-34	ATTCATAAAACTTTTATTCCACTTACATG	9.6
15:37967831-37968032	site	dyads_test_vs_ctrl_m1	D	31	59	TTTCAGAACATTTTACATTTTTCCCCCTC	9.6
15:58900176-58900377	site	dyads_test_vs_ctrl_m1	R	68	96	AACGTGAAAACTTTTATTCTATGTACAAT	8.1
15:73343126-73343327	site	dyads_test_vs_ctrl_m1	D	-23	5	AATGAAAGACCTTTAATACTCGTTCCATT	10.4
15:77079096-77079297	site	dyads_test_vs_ctrl_m1	R	-89	-61	ATTCATTATTTTTTGTATTACTCTCCATG	9.6
16:11220452-11220653	site	dyads_test_vs_ctrl_m1	D	-13	15	TTTCATTATTGTAGGCAATTATGTCCACA	8.6
16:22246480-22246681	site	dyads_test_vs_ctrl_m1	R	-45	-17	ATTTAAAAGGTTTTTCTACTGAATCCAGG	8.0
16:33497994-33498195	site	dyads_test_vs_ctrl_m1	R	28	56	CTACAGAATATTTATTTTTTTTACTAAAA	7.6
16:37697133-37697334	site	dyads_test_vs_ctrl_m1	D	-59	-31	ACCCAGAGCCTTTTCTTTTTCTTCCCAAG	8.7
16:38245133-38245334	site	dyads_test_vs_ctrl_m1	D	-83	-55	AAACAAAATTTATTATTATTATATATATA	8.7
16:54120008-54120209	site	dyads_test_vs_ctrl_m1	D	-21	7	AATCAGAACCCTAGTGTTTCTTAACTACG	9.7
16:75561405-75561606	site	dyads_test_vs_ctrl_m1	D	63	91	TTATAGAATTTCTCTTTTCTAGTTCTATA	7.8
16:84647608-84647809	site	dyads_test_vs_ctrl_m1	R	-49	-21	CCCCAGTACGTCTTTGCTCTCTTCCCAAC	9.7
16:91034115-91034316	site	dyads_test_vs_ctrl_m1	D	-41	-13	CCCCAGAAGACCCTTCTAATCTCTCAATA	7.7
16:94242118-94242319	site	dyads_test_vs_ctrl_m1	D	53	81	TTTTAAAACCTTCTGCTACCATATCCACC	8.6
17:3197871-3198072	site	dyads_test_vs_ctrl_m1	D	-31	-3	ATTCAAAACACTTGGGTTCCCCCTCCTCA	7.5
17:23344270-23344471	site	dyads_test_vs_ctrl_m1	D	71	99	TTTCATAAACCAATGGTATCTTATCAAAA	7.9
17:53354579-53354780	site	dyads_test_vs_ctrl_m1	R	-76	-48	CTTCAGATGTTCTTCATACATTTTACAAA	7.6
17:79934084-79934285	site	dyads_test_vs_ctrl_m1	R	-78	-50	AGTCTGTCGTCCTCATTTATGATCCCATA	7.9
17:91220275-91220476	site	dyads_test_vs_ctrl_m1	R	-6	22	CCTCTCTGCTCTATCTATCTATTTCCAGT	8.3
17:91220275-91220476	site	dyads_test_vs_ctrl_m1	R	54	82	CCTCTCTGCTCTATCTATCTATTTCCAGT	8.3
18:15831219-15831420	site	dyads_test_vs_ctrl_m1	D	7	35	TTTCCTTGTTATTACTTTCTCTCCACACA	9.0
18:34909808-34910009	site	dyads_test_vs_ctrl_m1	D	-63	-35	GCACAGCAGTCTCGGCTACTTTCCGAACA	8.2
18:35581883-35582084	site	dyads_test_vs_ctrl_m1	R	58	86	ATTAAGATATAATTCTTTATTTTCCCATA	10.0
18:36667482-36667683	site	dyads_test_vs_ctrl_m1	D	-37	-9	TTTCTGCAATTAATCTTTTTACTCCCACC	8.4
18:36667482-36667683	site	dyads_test_vs_ctrl_m1	D	-34	-6	CTGCAATTAATCTTTTTACTCCCACCATC	7.6
18:43477184-43477385	site	dyads_test_vs_ctrl_m1	D	13	41	ATTCCATAAACGGTATTATTAACACCAAA	8.5
18:61589395-61589596	site	dyads_test_vs_ctrl_m1	D	-4	24	TTTCAGTGCTTTTATTTACTATGCACTTA	9.7
19:4801596-4801797	site	dyads_test_vs_ctrl_m1	R	33	61	TATCAGAGTCGCAGCTTTCGTTCCGCCGC	8.3
19:21281394-21281595	site	dyads_test_vs_ctrl_m1	D	-41	-13	CTTCAGTTCTTAATGTAACTGTACCCTTC	7.6
19:29809764-29809965	site	dyads_test_vs_ctrl_m1	D	-86	-58	TTTCATTAATTTTTCCTTCTGCGATTATA	8.7
2:5961449-5961650	site	dyads_test_vs_ctrl_m1	R	-14	14	TCTCCGCAGCACTTTTTACTTTCCTCGGT	8.0
2:24593420-24593621	site	dyads_test_vs_ctrl_m1	R	-36	-8	GCTTAGAAATGTACTTTTCTGTAGACATG	8.0
2:36389246-36389447	site	dyads_test_vs_ctrl_m1	R	15	43	ACACATCAATCGTATCTTCATCCTCCATT	8.0
2:53145578-53145779	site	dyads_test_vs_ctrl_m1	D	18	46	CTTCAAAAGTAGTGTTTACTTCAACTACA	7.6
2:85041039-85041240	site	dyads_test_vs_ctrl_m1	R	-35	-7	CCTCAAAGCGCTTTTCTACTTCTTCCCTA	9.6
2:98662218-98662419	site	dyads_test_vs_ctrl_m1	D	-3	25	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
2:98666864-98667065	site	dyads_test_vs_ctrl_m1	R	-72	-44	TTTCCGTGATTTTCAGGTTTCTCGCCATA	9.4
2:98666864-98667065	site	dyads_test_vs_ctrl_m1	R	8	36	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
2:98666864-98667065	site	dyads_test_vs_ctrl_m1	R	46	74	TTTCTTTGATTTTCAGTTTTCTTGCCATA	7.7
2:103766550-103766751	site	dyads_test_vs_ctrl_m1	D	-47	-19	AATAAAAATAGTTTCCTTCCATATCCAGG	8.5
2:121437724-121437925	site	dyads_test_vs_ctrl_m1	R	-67	-39	ATTCAGAGTATATCCATTCTGTCCTCTCT	8.0
2:131322086-131322287	site	dyads_test_vs_ctrl_m1	D	32	60	AGCCAATAATACAACCTTCTATCCGCATA	10.9
2:153317439-153317640	site	dyads_test_vs_ctrl_m1	R	-44	-16	CGCCAGTAATCATCCTTATCATCCCCGTC	9.4
2:174346330-174346531	site	dyads_test_vs_ctrl_m1	D	56	84	ACACCGCAACCTTTCCTTTTTCCCCCAGT	9.2
3:37714961-37715162	site	dyads_test_vs_ctrl_m1	R	40	68	ACAGAGAAACATTGGCTACTTTAACCACC	9.5
3:95338458-95338659	site	dyads_test_vs_ctrl_m1	D	58	86	TCTCAAAAAGGTAGCGCTCTATCTCCTGC	8.0
3:99500831-99501032	site	dyads_test_vs_ctrl_m1	R	-26	2	ATTCATCACCCCCTTTATCTATCAGCATG	7.7
3:103744046-103744247	site	dyads_test_vs_ctrl_m1	R	25	53	TTCCATTGCTCATCTGTTCTCCCCCCAGG	7.8
3:112478615-112478816	site	dyads_test_vs_ctrl_m1	R	45	73	CTTCAGAGCATCTTCTTTCCTACTTCAGA	7.6
3:116631307-116631508	site	dyads_test_vs_ctrl_m1	R	-49	-21	TCTCTAAAGTGTATATTTTTGTGTCCAGT	9.3
3:135231563-135231764	site	dyads_test_vs_ctrl_m1	R	1	29	TTCTAGTGACTCCGGGTTCTGTTCCCAAC	8.3
3:152232543-152232744	site	dyads_test_vs_ctrl_m1	R	-93	-65	TATCAGTAGTGATAGTTATTTTGTACATT	10.1
4:44123859-44124060	site	dyads_test_vs_ctrl_m1	D	58	86	CTCCAGTAACTTTTGTATATGTACCTAGC	9.4
4:73309982-73310183	site	dyads_test_vs_ctrl_m1	R	13	41	ATTGAGAAGAGTGTTGTTCAGTTTCCACG	7.7
4:74228178-74228379	site	dyads_test_vs_ctrl_m1	D	-57	-29	ACCCATACTTCTGGCCTTCTATCCCCACA	9.1
4:82291556-82291757	site	dyads_test_vs_ctrl_m1	D	11	39	AATCAGTGGTCCATGTTATTCCCCCCAGT	11.7
4:82294688-82294889	site	dyads_test_vs_ctrl_m1	D	72	100	AATCTGTGTACTTACCTATAATAACCAAT	8.9
4:95632907-95633108	site	dyads_test_vs_ctrl_m1	D	-32	-4	TATTATTATTATTATTATTATTTACCATT	8.0
4:95632907-95633108	site	dyads_test_vs_ctrl_m1	D	-26	2	TATTATTATTATTATTTACCATTTCTACT	8.8
4:111807234-111807435	site	dyads_test_vs_ctrl_m1	D	21	49	TTTTAAAACCTTCTGCTACCATATCCACC	8.6
4:119137131-119137332	site	dyads_test_vs_ctrl_m1	R	-56	-28	TATATAAATATCTTCCATCTATACACAGC	7.9
4:123350733-123350934	site	dyads_test_vs_ctrl_m1	D	-68	-40	CTTCATAACACAATTCTTCTTTTACAATT	10.3
4:132148513-132148714	site	dyads_test_vs_ctrl_m1	D	-88	-60	TCTCAACGAAGTCGGCTAATTTTGCCATT	7.9
5:20987139-20987340	site	dyads_test_vs_ctrl_m1	D	-80	-52	TATCATAAAAGTATTACTATATTAACAGG	8.1
5:22486759-22486960	site	dyads_test_vs_ctrl_m1	R	-72	-44	TGCCAGCAGCCCTTGTTTATTTGCCCAGC	8.5
5:22693550-22693751	site	dyads_test_vs_ctrl_m1	D	32	60	GATCAAAATTCTTCTTTACAATTTCTAAT	8.4
5:33076171-33076372	site	dyads_test_vs_ctrl_m1	R	-88	-60	TCACCGTATTGTTTTTTGCTTTATACACA	8.0
5:69461527-69461728	site	dyads_test_vs_ctrl_m1	R	26	54	AAACATCTATCTTCTTGACTTTCCCCATT	7.6
5:89690127-89690328	site	dyads_test_vs_ctrl_m1	D	34	62	ATTCTGTAACCTGATTTAATGTCTTCAAA	7.5
5:92187897-92188098	site	dyads_test_vs_ctrl_m1	R	-62	-34	TATTAGTTGCTTTAGTTTCTCTCTACATA	9.6
5:110118480-110118681	site	dyads_test_vs_ctrl_m1	D	65	93	CCTTATAGTCCATTGCTTCTGCCTCTACG	7.6
6:27230894-27231095	site	dyads_test_vs_ctrl_m1	R	-6	22	CTTCAGAACTTATGTTTATTTTTGCCATA	11.5
6:27230894-27231095	site	dyads_test_vs_ctrl_m1	D	14	42	GTTCTGAAGCTGTTACTTCTCCCTACAGC	8.0
6:27230894-27231095	site	dyads_test_vs_ctrl_m1	D	55	83	AATCCGTAATTTATTGGACCTTGTCCAAC	8.9
6:31475433-31475634	site	dyads_test_vs_ctrl_m1	D	42	70	TTCCAGAGATCCTGAGTTCAATTCCCAGC	9.3
6:44792892-44793093	site	dyads_test_vs_ctrl_m1	R	-21	7	CGTCAGGACCGCTACGGACCTCCACCAGA	8.3
6:49252886-49253087	site	dyads_test_vs_ctrl_m1	D	-92	-64	TTTCATACTTCGTGTATTCTTCCCCAATT	8.4
6:72433132-72433333	site	dyads_test_vs_ctrl_m1	D	-75	-47	GGTGATGGCTTCTCTGTACTTACGCCATA	7.6
6:72434114-72434315	site	dyads_test_vs_ctrl_m1	R	54	82	ATTGAAAGTGTTAGCCTTTTTTCCCCAGA	8.4
6:88578208-88578409	site	dyads_test_vs_ctrl_m1	R	16	44	CTCCATAAAACATTCTTACTATTTCCTTC	9.7
6:94501617-94501818	site	dyads_test_vs_ctrl_m1	D	-49	-21	TTTCATTTACTGTTATTTACTTCTCCAAA	7.7
6:127282170-127282371	site	dyads_test_vs_ctrl_m1	D	-5	23	TGTCTGTGTCTTTCATTTTTCTTGCCATC	7.7
6:145266549-145266750	site	dyads_test_vs_ctrl_m1	D	-67	-39	GTTCTGAACTATAAGCTTATTACTCCAGC	9.3
6:145932827-145933028	site	dyads_test_vs_ctrl_m1	D	23	51	CGTCAGGACCGCTACGGACCTCCACCAGA	8.3
7:7062290-7062491	site	dyads_test_vs_ctrl_m1	D	-76	-48	TCTCTGTATACTATGAATGTCTTCACACA	7.5
7:16562466-16562667	site	dyads_test_vs_ctrl_m1	R	-77	-49	TTTGTGAAGTGCAGGATATTATCCCCATC	8.4
7:29799283-29799484	site	dyads_test_vs_ctrl_m1	D	6	34	ATTCTGTAACCTGATTTAATGTCTTCAAA	7.5
7:84615563-84615764	site	dyads_test_vs_ctrl_m1	D	9	37	AACCAAAAATCTATTCTTCTGATGACATG	7.7
7:90208138-90208339	site	dyads_test_vs_ctrl_m1	D	-45	-17	TCACAGTATGTTTGATTTTTATCCACAAG	8.9
7:123194182-123194383	site	dyads_test_vs_ctrl_m1	D	-95	-67	GATCAGTAACTATGCATACTGTAACCAAG	11.8
8:3583767-3583968	site	dyads_test_vs_ctrl_m1	D	-28	0	ACAGAGAAACATTGGCTACTTTAACCACC	9.5
8:4040161-4040362	site	dyads_test_vs_ctrl_m1	D	45	73	TGTCAAAAACAGTTGGTACATATTCCAAT	7.7
8:20986996-20987197	site	dyads_test_vs_ctrl_m1	R	-10	18	CTACACAACTCCTTCTTACTTTCCCCATG	11.9
8:25640813-25641014	site	dyads_test_vs_ctrl_m1	D	18	46	AAACTTTAGCCCTACTGACTATTACCATT	7.7
8:34111497-34111698	site	dyads_test_vs_ctrl_m1	D	-18	10	CTTCAGATGTTCTTCATACATTTTACAAA	7.6
8:41658337-41658538	site	dyads_test_vs_ctrl_m1	D	-2	26	CTTCATAGACTCATTGTACTCTATCTTTT	8.2
8:78486064-78486265	site	dyads_test_vs_ctrl_m1	R	35	63	GTTCCGAACTATAAGCTTATTACTCCAGC	10.2
8:112013923-112014124	site	dyads_test_vs_ctrl_m1	D	-73	-45	TTTTAAAACCTTCTGCTACCATATCCACC	8.6
9:3000460-3000661	site	dyads_test_vs_ctrl_m1	D	-68	-40	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
9:3000460-3000661	site	dyads_test_vs_ctrl_m1	D	-30	-2	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
9:3000460-3000661	site	dyads_test_vs_ctrl_m1	D	50	78	TTTCCGTGATTTTCAGTTTTCTCGACATA	10.0
9:3006722-3006923	site	dyads_test_vs_ctrl_m1	D	-15	13	TTTCCGTGATTTTCAGTTTTCTCGCCATA	11.7
9:3008437-3008638	site	dyads_test_vs_ctrl_m1	D	-30	-2	TTTCCGTGATTTTCAGTTTTCTTGCCATA	9.9
9:3009928-3010129	site	dyads_test_vs_ctrl_m1	D	21	49	TTTCCGTGATTTTCAGTTTTCTCGCCATA	11.7
9:3014038-3014239	site	dyads_test_vs_ctrl_m1	D	-53	-25	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
9:3014038-3014239	site	dyads_test_vs_ctrl_m1	D	-15	13	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
9:3014038-3014239	site	dyads_test_vs_ctrl_m1	D	65	93	TTTCAGTGATTTTCAGTTTTCTCGCCATA	12.7
9:3015300-3015501	site	dyads_test_vs_ctrl_m1	D	-85	-57	TTTCCTTGATTTTCAGTTTTCTTGCCATA	7.6
9:3015300-3015501	site	dyads_test_vs_ctrl_m1	D	31	59	TTTCCATGATTTTCAGTTTTCTCGCCATA	9.7
9:3017931-3018132	site	dyads_test_vs_ctrl_m1	D	-85	-57	TTTCCGTGATTTTCAGTTTTCTTGCCATA	9.9
9:3017931-3018132	site	dyads_test_vs_ctrl_m1	D	31	59	TTTCCATGATTTTCAGTTTTCTCGCCATA	9.7
9:3020812-3021013	site	dyads_test_vs_ctrl_m1	D	-46	-18	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
9:3020812-3021013	site	dyads_test_vs_ctrl_m1	D	-8	20	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
9:3020812-3021013	site	dyads_test_vs_ctrl_m1	D	72	100	TTTCAGTGATTTTCAGTTTTCTCGCCATA	12.7
9:3022432-3022633	site	dyads_test_vs_ctrl_m1	D	-87	-59	TTTCAATGATTTTCATTTTTCTTGCCATA	10.0
9:3022432-3022633	site	dyads_test_vs_ctrl_m1	D	31	59	TTTCCGTGATTTTCAGTTTTCTTGCCATA	9.9
9:3024368-3024569	site	dyads_test_vs_ctrl_m1	D	-92	-64	TTTCCGTGATTTTCAGTTTCCTCGCCATA	9.9
9:3024368-3024569	site	dyads_test_vs_ctrl_m1	D	24	52	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
9:3024368-3024569	site	dyads_test_vs_ctrl_m1	D	62	90	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
9:3026320-3026521	site	dyads_test_vs_ctrl_m1	D	-58	-30	TTTCCTTGATTTTCAGTTTTCTTGCCATA	7.6
9:3026320-3026521	site	dyads_test_vs_ctrl_m1	D	-20	8	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
9:3026320-3026521	site	dyads_test_vs_ctrl_m1	D	60	88	TTTCAGTGATTTTCAGTTTCCTTGCCATA	9.1
9:3028738-3028939	site	dyads_test_vs_ctrl_m1	D	-17	11	TTTCCGTGATTTTCAGTTTTCTTGCCATA	9.9
9:3035002-3035203	site	dyads_test_vs_ctrl_m1	D	-25	3	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
9:3035002-3035203	site	dyads_test_vs_ctrl_m1	D	13	41	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
9:3037313-3037514	site	dyads_test_vs_ctrl_m1	D	-58	-30	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
9:3037313-3037514	site	dyads_test_vs_ctrl_m1	D	-20	8	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
9:35305341-35305542	site	dyads_test_vs_ctrl_m1	R	-87	-59	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
9:35305341-35305542	site	dyads_test_vs_ctrl_m1	R	29	57	TTTCCGTGATTTTCAGTTTTCTCCCCATA	11.8
9:70573689-70573890	site	dyads_test_vs_ctrl_m1	R	-56	-28	TCTCATAATCCTTGGCTTCCTTCTCCGGG	9.8
9:85325034-85325235	site	dyads_test_vs_ctrl_m1	D	53	81	GGTCAGAATCATTGCACACTTTAACCATT	8.7
9:88449808-88450009	site	dyads_test_vs_ctrl_m1	R	-82	-54	GTTCAAAAACTATCTGTACTATCTGTACT	9.2
MT:5585-5786	site	dyads_test_vs_ctrl_m1	D	63	91	CATCAGTAGACCTAACAATTTTCTCCCTT	8.1
X:5265901-5266102	site	dyads_test_vs_ctrl_m1	R	-10	18	ATTGAGTAGACAGTTGTTCAATTTCCATG	7.6
X:23800666-23800867	site	dyads_test_vs_ctrl_m1	R	54	82	ATACTATATGGTACCTTATTTTCTCCAGG	8.8
X:33363028-33363229	site	dyads_test_vs_ctrl_m1	D	46	74	ACTCAAAATCATTGCCATCTACTCCTATA	8.4
X:33581522-33581723	site	dyads_test_vs_ctrl_m1	R	47	75	TTACAGAATTGGAAAATATTTTCACCAAC	7.7
X:48010296-48010497	site	dyads_test_vs_ctrl_m1	R	16	44	TCTTCGTAGTTTACCTGACCATCCCCATC	7.7
X:61785809-61786010	site	dyads_test_vs_ctrl_m1	R	-52	-24	ACTCAGTAGTCCATATTGCTATCTCATCA	9.4
X:105278704-105278905	site	dyads_test_vs_ctrl_m1	D	-99	-71	TGTGCATACTCTGTAGTATTTTCCACACG	7.5
X:114981201-114981402	site	dyads_test_vs_ctrl_m1	R	70	98	AAACTAAAATCTACCTTTCTCGCTCCCCG	7.9
;
; Matrices
;	matrix	name                 	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	dyads_test_vs_ctrl_m1	29	4	0	-29.100	18.900	48.000	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                 	matches	scored
;	1	dyads_test_vs_ctrl_m1	184	0
;		TOTAL          	184	0
; Host name	rsat
; Job started	2025-09-18.095853
; Job done	2025-09-18.095853
; Seconds	0.25
;	user	0.25
;	system	0.03
;	cuser	0.08
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:6247971-6248172	site	dyads_test_vs_ctrl_m2	D	-49	-24	TTTGCAGTTTGTTAGAAACTAAAAAT	8.4
1:8816140-8816341	site	dyads_test_vs_ctrl_m2	R	-22	3	GATTTTGAAAACTAATAACTTAAAAC	7.7
1:9746119-9746320	site	dyads_test_vs_ctrl_m2	R	-60	-35	AATCCGGACGATTACACTCCTGTAAA	8.2
1:58646716-58646917	site	dyads_test_vs_ctrl_m2	R	-43	-18	GGTCCAGTACTTTTTCTACCACAAAT	9.2
1:63165051-63165252	site	dyads_test_vs_ctrl_m2	D	-27	-2	TTTACAGTTAACATAAATTTTACATT	9.4
1:108460137-108460338	site	dyads_test_vs_ctrl_m2	R	-53	-28	TTTCCAAAAAATGTAAGATTTAAAGG	8.6
1:161818417-161818618	site	dyads_test_vs_ctrl_m2	D	-13	12	ACTTTAGATCGCCTTCGTTTTAAAGC	7.8
1:162671906-162672107	site	dyads_test_vs_ctrl_m2	D	7	32	TATATATATGTATATATATTTATATT	8.8
1:162671906-162672107	site	dyads_test_vs_ctrl_m2	R	7	32	AATATAAATATATATACATATATATA	8.9
1:162671906-162672107	site	dyads_test_vs_ctrl_m2	D	13	38	TATGTATATATATTTATATTTATATA	8.8
1:162671906-162672107	site	dyads_test_vs_ctrl_m2	R	13	38	TATATAAATATAAATATATATACATA	7.7
10:20325356-20325557	site	dyads_test_vs_ctrl_m2	R	38	63	TATGCAGTCTCTTTCAGTTTATAATT	7.6
10:39822406-39822607	site	dyads_test_vs_ctrl_m2	R	-70	-45	CCTCTAAATCTATTAATAATAATATA	7.8
10:40301972-40302173	site	dyads_test_vs_ctrl_m2	D	-72	-47	TTTTATATTAACTTTTTTTTAAAAAA	8.5
10:69019628-69019829	site	dyads_test_vs_ctrl_m2	D	-36	-11	GCTACAGTGTACTTAGATATAATAAT	8.5
10:96619324-96619525	site	dyads_test_vs_ctrl_m2	R	-42	-17	AAACCAGACCTCCACTTTCTAAAAAT	7.9
10:108278716-108278917	site	dyads_test_vs_ctrl_m2	D	-83	-58	ATTCGAATAAATTGTACATTTAAAGC	8.8
10:108278716-108278917	site	dyads_test_vs_ctrl_m2	R	-39	-14	AATATAGTATACAATACACTCAATAA	8.2
10:120923653-120923854	site	dyads_test_vs_ctrl_m2	D	52	77	TATATTATATATATATATTTTAACAC	7.7
11:3661704-3661905	site	dyads_test_vs_ctrl_m2	D	-91	-66	TTTCCTATAGCTGAATAATTCAAAAT	8.1
11:23489473-23489674	site	dyads_test_vs_ctrl_m2	R	17	42	ATACAAGTAAACTTAATTTTGATAAT	7.9
11:35776195-35776396	site	dyads_test_vs_ctrl_m2	D	-97	-72	ATTCGGAAATACTTGACTTCTAATGT	7.8
11:51600873-51601074	site	dyads_test_vs_ctrl_m2	D	-17	8	CTTACAATACATTAGATTCCCAAAAG	9.3
11:75765378-75765579	site	dyads_test_vs_ctrl_m2	D	47	72	CATGGAATTAACATTAAACTTAAATA	7.7
11:77542455-77542656	site	dyads_test_vs_ctrl_m2	D	60	85	TATCTTGGATAGTTTAGATTTAAATG	7.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m2	D	54	79	TATACAAATATATATATATATATACA	11.0
11:77709708-77709909	site	dyads_test_vs_ctrl_m2	D	62	87	TATATATATATATATACATATATATA	7.8
11:77709708-77709909	site	dyads_test_vs_ctrl_m2	R	62	87	TATATATATGTATATATATATATATA	7.7
11:77709708-77709909	site	dyads_test_vs_ctrl_m2	D	64	89	TATATATATATATACATATATATATA	7.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m2	R	64	89	TATATATATATGTATATATATATATA	7.8
11:78272016-78272217	site	dyads_test_vs_ctrl_m2	R	5	30	ATTTCAATGTTTTTGCGTTCCAAAGA	7.8
11:88083427-88083628	site	dyads_test_vs_ctrl_m2	R	44	69	GTTCCTAAGCTTTTTATATACAAAAG	8.0
11:93945469-93945670	site	dyads_test_vs_ctrl_m2	R	-21	4	ATTCCATACATTTTTACACTAAAAAG	8.7
11:98185572-98185773	site	dyads_test_vs_ctrl_m2	R	-69	-44	TCTCCAGTTCTCCTTGGTCTGTAACA	7.8
12:24493230-24493431	site	dyads_test_vs_ctrl_m2	D	51	76	TTTTCAATATCATTAGCTTTAAAAGA	8.9
12:31007094-31007295	site	dyads_test_vs_ctrl_m2	D	-100	-75	AGTGCAGTAAACGTAGATTTAAAGCA	7.6
12:54645957-54646158	site	dyads_test_vs_ctrl_m2	D	-4	21	CAACTAATGACCTTAGGTTTTAAAAA	7.6
12:55095822-55096023	site	dyads_test_vs_ctrl_m2	D	12	37	AGTCATGTGGAATATATATTTATATA	8.9
12:65043759-65043960	site	dyads_test_vs_ctrl_m2	D	42	67	ATTCCAGTAATTAGTATTTCTAAGGT	7.9
12:67037108-67037309	site	dyads_test_vs_ctrl_m2	R	-53	-28	ATTAAAAATATTTACGTTTCTACAGT	7.5
12:80108385-80108586	site	dyads_test_vs_ctrl_m2	R	-62	-37	TATCAAAACGTATTTATTGCCAAACT	7.6
12:108815790-108815991	site	dyads_test_vs_ctrl_m2	R	-86	-61	CATCTTATTAAAGTATTTTTTAAATT	7.9
13:15119277-15119478	site	dyads_test_vs_ctrl_m2	R	-30	-5	GATTTTGAAAACTAATAACTTAAAAC	7.7
13:17882287-17882488	site	dyads_test_vs_ctrl_m2	R	-70	-45	CATACTAATAAATATAATTTATAAGC	9.1
13:49494187-49494388	site	dyads_test_vs_ctrl_m2	R	-73	-48	ATTCCATAAGTCTAAGAATTTAAATC	9.4
13:69655081-69655282	site	dyads_test_vs_ctrl_m2	D	-17	8	ATTACGATTTTGAATAGTTTGAAATA	8.7
14:13903319-13903520	site	dyads_test_vs_ctrl_m2	D	23	48	AGTCCTAGTTTATTTTTATTAAAACA	9.6
14:31700030-31700231	site	dyads_test_vs_ctrl_m2	R	-87	-62	ATTCCTGTATATTTTAGAGTATAATA	8.3
14:47736218-47736419	site	dyads_test_vs_ctrl_m2	R	-19	6	TATTCAAACAGTTTTATTATAAAACT	7.7
14:47736218-47736419	site	dyads_test_vs_ctrl_m2	R	-3	22	AATGTAAAGGTCTAATTATTCAAACA	8.5
14:56927397-56927598	site	dyads_test_vs_ctrl_m2	R	65	90	CATAAAGATATCTAAAGACTAAAATA	10.2
14:66967885-66968086	site	dyads_test_vs_ctrl_m2	R	-45	-20	TGTTCAATGCTGATATCTTCGAAAAT	7.6
14:73796932-73797133	site	dyads_test_vs_ctrl_m2	D	-14	11	TCTCCAGTTCTCCTTGGTCTGTAACA	7.8
14:73955269-73955470	site	dyads_test_vs_ctrl_m2	D	70	95	GGTCCAGTACTTTTTCTACCACAAAT	9.2
14:122158883-122159084	site	dyads_test_vs_ctrl_m2	R	-33	-8	TTACAAATGCACATAATATTTAAATC	8.0
15:8358915-8359116	site	dyads_test_vs_ctrl_m2	D	-77	-52	TGTCCTGGATACTGCACATTAAAAGG	7.5
15:35814959-35815160	site	dyads_test_vs_ctrl_m2	D	1	26	TATCCAGACTTGTATAAATCAGTAAT	8.2
15:36595862-36596063	site	dyads_test_vs_ctrl_m2	R	-63	-38	AGTCCTAGATTACTTGATTTAAAACA	7.6
15:50776550-50776751	site	dyads_test_vs_ctrl_m2	R	-78	-53	AGTCCGGAATATCAAACACCATAAGT	8.2
15:63931176-63931377	site	dyads_test_vs_ctrl_m2	D	-1	24	AATATTAAATATTAGTTTTCAAAAAA	7.6
15:83405149-83405350	site	dyads_test_vs_ctrl_m2	D	-86	-61	TATTTAATACAGTATCTATTCTAAAA	7.7
15:87473797-87473998	site	dyads_test_vs_ctrl_m2	R	-65	-40	GATCCAATTATCTAATCTCTAATTCA	8.5
16:23110746-23110947	site	dyads_test_vs_ctrl_m2	D	70	95	GATTCGGTGCAATAAGTATTTAGACC	7.8
16:38245133-38245334	site	dyads_test_vs_ctrl_m2	R	71	96	TCCACAAAAAAGTTTATATTTAAAAT	7.8
16:54120008-54120209	site	dyads_test_vs_ctrl_m2	R	-82	-57	CCTCCAGTCTATATATTTTTTTAATC	8.9
17:21284007-21284208	site	dyads_test_vs_ctrl_m2	D	-2	23	GATTTTGAAAACTAATAACTTAAAAC	7.7
17:83425037-83425238	site	dyads_test_vs_ctrl_m2	R	-38	-13	ATTAATAAAGAATTAATTTTTAAAAA	7.6
18:36290118-36290319	site	dyads_test_vs_ctrl_m2	R	-41	-16	TTTACGGTCACCTCATATTTAACATT	8.3
18:42071288-42071489	site	dyads_test_vs_ctrl_m2	D	-61	-36	TGTCCTGTTCTTTTATTATTATTATT	8.1
18:43477184-43477385	site	dyads_test_vs_ctrl_m2	D	19	44	TAAACGGTATTATTAACACCAAAAGT	9.0
18:79856329-79856530	site	dyads_test_vs_ctrl_m2	R	-26	-1	TGTCTAATTCTTTATTAATTTAAAAT	10.3
18:79856329-79856530	site	dyads_test_vs_ctrl_m2	R	56	81	GATGTAATTATAATTTGATTAAAATA	7.9
19:21280422-21280623	site	dyads_test_vs_ctrl_m2	D	33	58	AATCCAGAGAATATAAAATTACTACA	7.6
19:40560570-40560771	site	dyads_test_vs_ctrl_m2	R	-79	-54	TATCTGGAGAAGTACCGTCCGAAAAT	10.0
2:22554307-22554508	site	dyads_test_vs_ctrl_m2	R	-45	-20	GCCACAGTTATGTTTATATCTAAACC	8.2
2:24593420-24593621	site	dyads_test_vs_ctrl_m2	D	40	65	AATTCAGTATCAATAGATTCCAAATC	7.6
2:39197180-39197381	site	dyads_test_vs_ctrl_m2	D	-82	-57	AATTTAGATAATTTAAAATTAAAAAA	9.0
2:78920155-78920356	site	dyads_test_vs_ctrl_m2	D	-17	8	GCTGTAGATTAGTTATGTTTAAAATG	7.8
2:109724142-109724343	site	dyads_test_vs_ctrl_m2	R	-50	-25	TACCCTGTTATGTATATATACAAATA	9.1
2:122011897-122012098	site	dyads_test_vs_ctrl_m2	R	20	45	TTTCCAATACTGTACTTTCTTAACAA	9.0
2:130837654-130837855	site	dyads_test_vs_ctrl_m2	D	-21	4	TTTAAAATACAATTCTTTTTAAAATT	8.2
2:155390752-155390953	site	dyads_test_vs_ctrl_m2	D	-92	-67	CATCCAAAACACTATATAATAAAATT	11.0
2:170463506-170463707	site	dyads_test_vs_ctrl_m2	R	-23	2	ATTGCTGATAATCATACTCCGAAAGA	7.5
3:75517357-75517558	site	dyads_test_vs_ctrl_m2	D	0	25	TTTACAGATAAATGCAGTTTAATACT	7.6
3:103354917-103355118	site	dyads_test_vs_ctrl_m2	D	-1	24	TATTGAAATATCAAAATACTGAAATA	7.8
3:116631307-116631508	site	dyads_test_vs_ctrl_m2	D	-80	-55	TTTACAAAGTAACACTTTTTTAAATA	9.1
3:116631307-116631508	site	dyads_test_vs_ctrl_m2	R	-67	-42	TGTCCAGTTATATTATTTAAAAAAGT	7.8
4:11960810-11961011	site	dyads_test_vs_ctrl_m2	D	-40	-15	ATACCAGTTAAGTATTCACCCACAAT	7.6
4:44123859-44124060	site	dyads_test_vs_ctrl_m2	D	-32	-7	GATCATGTTCATTATAATCTCAAAGG	7.8
4:79327824-79328025	site	dyads_test_vs_ctrl_m2	R	29	54	TCTCCAGTTCTCCTTGGTCTGTAACA	7.8
4:95050997-95051198	site	dyads_test_vs_ctrl_m2	R	69	94	GCTACAGTAACCCTAAGATCCTAAAA	7.5
4:119137131-119137332	site	dyads_test_vs_ctrl_m2	R	0	25	TGTCCAGATATACTATAACTTAGTGT	7.7
4:129899341-129899542	site	dyads_test_vs_ctrl_m2	D	56	81	TTTGCGGATGCACATCGACCTAAACT	7.6
4:135867227-135867428	site	dyads_test_vs_ctrl_m2	R	10	35	TGTCCTAAAATGCTTACTTTCAAACT	8.2
4:136339831-136340032	site	dyads_test_vs_ctrl_m2	D	-61	-36	ATTCCAAACGTCGTCAGACCAACAAC	8.8
5:13526296-13526497	site	dyads_test_vs_ctrl_m2	R	10	35	TTTCATATATTTTAATTTTTTAAATG	9.1
5:22486759-22486960	site	dyads_test_vs_ctrl_m2	R	20	45	AATGATGTTATCTTAACACTGAAATT	7.5
5:43286854-43287055	site	dyads_test_vs_ctrl_m2	R	-24	1	CATCCAGTCTGCATAAAATCGAATTC	7.7
5:44406182-44406383	site	dyads_test_vs_ctrl_m2	D	-61	-36	ATTCTAAGTCACTTTTATTTCCAATA	7.7
5:106617408-106617609	site	dyads_test_vs_ctrl_m2	D	-95	-70	AATAAAGAACATTAGATTTTTAAAAT	8.5
5:129982605-129982806	site	dyads_test_vs_ctrl_m2	R	47	72	TATTTAATACAGTATCTATTCTAAAA	7.7
5:142529109-142529310	site	dyads_test_vs_ctrl_m2	D	75	100	CTTCTTATGCACCTAATATCTAAATT	8.9
6:8215473-8215674	site	dyads_test_vs_ctrl_m2	R	-22	3	TCTCAAATTTTCTAAGATCCCATATT	7.5
6:27230894-27231095	site	dyads_test_vs_ctrl_m2	R	49	74	GGTCCAATAAATTACGGATTCACAAA	9.4
6:31475433-31475634	site	dyads_test_vs_ctrl_m2	D	-45	-20	TGTCCTATAGTTTATAGTTTATATTA	8.8
6:31475433-31475634	site	dyads_test_vs_ctrl_m2	R	-26	-1	TCTACATTACTCTTAATATTAATATA	9.6
6:39142630-39142831	site	dyads_test_vs_ctrl_m2	D	75	100	CTTCCAAATAAATAGCTTTAAAAAAA	8.3
6:44792892-44793093	site	dyads_test_vs_ctrl_m2	R	-92	-67	TATCCAATAATTTTGTATTTTAGTTA	9.0
6:67284021-67284222	site	dyads_test_vs_ctrl_m2	D	-94	-69	ATCCCAAACAACTAAGAATTAAAAAA	9.0
6:67284021-67284222	site	dyads_test_vs_ctrl_m2	R	-8	17	TAGCTAGAGAAGTTCGTTTTCAAAAC	7.7
6:134541666-134541867	site	dyads_test_vs_ctrl_m2	D	-28	-3	ACTTCAATACGATTAGTTTCAGAATC	7.5
6:134925209-134925410	site	dyads_test_vs_ctrl_m2	D	-43	-18	TATACTAACTTATTTATGTTAAAAAG	7.8
7:13179821-13180022	site	dyads_test_vs_ctrl_m2	R	-98	-73	CTTCCAGATGTCAAACGTTTACAAAG	8.5
7:84615563-84615764	site	dyads_test_vs_ctrl_m2	D	60	85	GATACGGTGCTCTACATTCCCAAGGA	8.2
7:90445937-90446138	site	dyads_test_vs_ctrl_m2	R	-25	0	TATACAAAGAAATATATACAAAAATG	8.8
7:128442287-128442488	site	dyads_test_vs_ctrl_m2	D	22	47	GTTCCAAACATTTCAATTTTTAAAAT	9.0
7:128446639-128446840	site	dyads_test_vs_ctrl_m2	R	-66	-41	TTTTCAATTTTTTAATATTTCATATA	8.5
8:22580329-22580530	site	dyads_test_vs_ctrl_m2	D	54	79	GGTCCAGAAAAATCTATATCAACATT	7.8
8:52196270-52196471	site	dyads_test_vs_ctrl_m2	R	3	28	TTTACAGATATCTGTAAACTATTACA	7.6
8:90247387-90247588	site	dyads_test_vs_ctrl_m2	D	5	30	AATACAGTGTTTTTATTTTCCCAAAC	7.9
8:95825606-95825807	site	dyads_test_vs_ctrl_m2	R	-10	15	TATCCAGGTCTTTTAAGATCCATAAA	8.8
8:102633596-102633797	site	dyads_test_vs_ctrl_m2	D	-76	-51	TATACTAAAATAAGAACTTTAAAATT	7.7
9:3022432-3022633	site	dyads_test_vs_ctrl_m2	D	-53	-28	CGTCCTATAGTGGACATTTCTAAATT	9.2
9:25308163-25308364	site	dyads_test_vs_ctrl_m2	R	-56	-31	TATCTAAATTAAATGTTATTACAAAA	8.0
9:88451352-88451553	site	dyads_test_vs_ctrl_m2	D	51	76	TCTACAGAAATTTAAGTTTTAAAATA	10.9
9:120960296-120960497	site	dyads_test_vs_ctrl_m2	D	6	31	ATACCAGTTGCCTTTTATCCCAAAGT	8.9
X:13521794-13521995	site	dyads_test_vs_ctrl_m2	D	-12	13	TTTCCAAAAATATAACATTCCAAAGG	9.9
X:15366229-15366430	site	dyads_test_vs_ctrl_m2	R	-90	-65	AAACCAGACCTCCACTTTCTAAAAAT	7.9
X:51004277-51004478	site	dyads_test_vs_ctrl_m2	D	-87	-62	AATACAGATATCTATTTTATTAAAAA	10.5
X:51005059-51005260	site	dyads_test_vs_ctrl_m2	D	-81	-56	AATCAAATGCAACACGATTTAAAAAA	7.7
X:68717160-68717361	site	dyads_test_vs_ctrl_m2	R	-41	-16	TTTCAAATACTATACATTCCCAGAAT	7.8
X:106992710-106992911	site	dyads_test_vs_ctrl_m2	R	-6	19	TATACTGTAAAAATTAATTTACAAAA	7.8
X:153501184-153501385	site	dyads_test_vs_ctrl_m2	R	-76	-51	TGTACAATTTAATGTATACTTAGAGA	7.8
;
; Matrices
;	matrix	name                 	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	dyads_test_vs_ctrl_m2	26	4	0	-26.800	14.100	40.900	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                 	matches	scored
;	1	dyads_test_vs_ctrl_m2	133	0
;		TOTAL          	133	0
; Host name	rsat
; Job started	2025-09-18.095854
; Job done	2025-09-18.095855
; Seconds	0.26
;	user	0.26
;	system	0.02
;	cuser	0.08
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:8056450-8056651	site	dyads_test_vs_ctrl_m3	D	-22	7	ATCCATCAAAATTATGTATCATACAAACTG	8.4
1:8791917-8792118	site	dyads_test_vs_ctrl_m3	R	61	90	TACCGGCATGTCATGTTACCCAGAGAACTC	7.6
1:9746119-9746320	site	dyads_test_vs_ctrl_m3	R	-65	-36	ATCCGGACGATTACACTCCTGTAAATATAG	8.7
1:19153043-19153244	site	dyads_test_vs_ctrl_m3	D	-4	25	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
1:21511981-21512182	site	dyads_test_vs_ctrl_m3	R	21	50	AAGCATTTGTTATTGATGCTGTAAGAACTA	8.0
1:24613180-24613381	site	dyads_test_vs_ctrl_m3	R	22	51	TTCCTTATTGTTTGCCTACTACGACAACTA	8.4
1:55760127-55760328	site	dyads_test_vs_ctrl_m3	R	2	31	CTAAATCGTACCCTTATACTCTCAGATAAG	7.9
1:55760127-55760328	site	dyads_test_vs_ctrl_m3	R	24	53	CACCGTAACTCCTTACTACATTCTAAATCG	9.6
1:60692064-60692265	site	dyads_test_vs_ctrl_m3	R	-66	-37	CGCCAGAAGTTCTTTTATCCTTGAGAAGAC	8.1
1:95026280-95026481	site	dyads_test_vs_ctrl_m3	D	-3	26	GTCCAGCTTCGTTTATTTCATTAGATATTT	8.1
1:162671906-162672107	site	dyads_test_vs_ctrl_m3	D	8	37	ATATATATGTATATATATTTATATTTATAT	7.8
1:162671906-162672107	site	dyads_test_vs_ctrl_m3	D	10	39	ATATATGTATATATATTTATATTTATATAA	7.9
1:162671906-162672107	site	dyads_test_vs_ctrl_m3	R	10	39	TTATATAAATATAAATATATATACATATAT	8.3
1:162671906-162672107	site	dyads_test_vs_ctrl_m3	D	14	43	ATGTATATATATTTATATTTATATAAAAAG	7.8
1:162671906-162672107	site	dyads_test_vs_ctrl_m3	D	16	45	GTATATATATTTATATTTATATAAAAAGAC	11.7
1:164437163-164437364	site	dyads_test_vs_ctrl_m3	R	67	96	GTACAATTTTATTTTTTTCTGCAAGAAAAA	8.4
1:165866197-165866398	site	dyads_test_vs_ctrl_m3	R	7	36	CTGCAGAACCTTAGACTTGTGTACTAAGTA	7.8
1:172668785-172668986	site	dyads_test_vs_ctrl_m3	D	-22	7	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
1:172668785-172668986	site	dyads_test_vs_ctrl_m3	D	54	83	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
1:180802598-180802799	site	dyads_test_vs_ctrl_m3	R	-45	-16	TTCCATCCATTCACTATACTTTTCTAACTG	9.8
10:20325356-20325557	site	dyads_test_vs_ctrl_m3	R	18	47	GTTTATAATTTTTTTCTTCTCTAAATCCAT	8.0
10:40566180-40566381	site	dyads_test_vs_ctrl_m3	D	-57	-28	CTGCAGTCTGATCTGATTCTGTATTATCAA	7.7
10:58465078-58465279	site	dyads_test_vs_ctrl_m3	R	-27	2	TTCAGGAATACTATTCTTCTTTCTGATCAT	7.8
10:69019628-69019829	site	dyads_test_vs_ctrl_m3	D	-35	-6	CTACAGTGTACTTAGATATAATAATAAATA	8.2
10:85313742-85313943	site	dyads_test_vs_ctrl_m3	R	-79	-50	ACCTATATGAGCATCGATCTCTACAATCTT	7.9
10:99023572-99023773	site	dyads_test_vs_ctrl_m3	D	-100	-71	GTAGATACTTTTTTTGTTCTTCATAGACGG	7.5
10:108278716-108278917	site	dyads_test_vs_ctrl_m3	R	-68	-39	ATACAGTCAGCTACTATACGCTTTAAATGT	7.5
10:117815440-117815641	site	dyads_test_vs_ctrl_m3	D	-43	-14	ATACAGTACACCATTTTCATACATGTACAA	7.7
10:117815440-117815641	site	dyads_test_vs_ctrl_m3	R	60	89	CACGAGAGATTTTTACTTATATAATAGTTC	7.9
10:120923653-120923854	site	dyads_test_vs_ctrl_m3	D	29	58	ATACAGAAAGATTGGTTACTTTATATATTA	10.8
10:120923653-120923854	site	dyads_test_vs_ctrl_m3	R	45	74	TTAAAATATATATATATAATATATAAAGTA	7.8
10:122591143-122591344	site	dyads_test_vs_ctrl_m3	R	53	82	ATACATACATATATAATACATACACACACA	7.6
10:122591143-122591344	site	dyads_test_vs_ctrl_m3	R	61	90	ATTCATACATACATACATATATAATACATA	9.0
11:30099526-30099727	site	dyads_test_vs_ctrl_m3	R	-89	-60	TAACAAATTTTCATCTTACTGCACAATCAA	7.7
11:41142429-41142630	site	dyads_test_vs_ctrl_m3	R	-63	-34	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
11:41142429-41142630	site	dyads_test_vs_ctrl_m3	R	13	42	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
11:46243313-46243514	site	dyads_test_vs_ctrl_m3	D	-14	15	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
11:46243313-46243514	site	dyads_test_vs_ctrl_m3	D	62	91	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
11:53420947-53421148	site	dyads_test_vs_ctrl_m3	D	-58	-29	CCACATCTGTATAGTATATTATATGTATTT	7.6
11:53420947-53421148	site	dyads_test_vs_ctrl_m3	R	-56	-27	CAAAATACATATAATATACTATACAGATGT	8.9
11:69998373-69998574	site	dyads_test_vs_ctrl_m3	D	-94	-65	CCCCGTCGGACCTTCGAACTATCCAGACTT	8.4
11:75765378-75765579	site	dyads_test_vs_ctrl_m3	D	14	43	GTACAGATCTGTATTGTTCTTACTGAAACA	8.6
11:77529243-77529444	site	dyads_test_vs_ctrl_m3	D	-32	-3	ATACAATTAATACAGGTTATATACGAACTA	9.1
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	45	74	ATATATATATATATTTGTATATATTATCCT	7.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	47	76	ATATATATATATATATTTGTATATATTATC	8.5
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	49	78	GTATATATATATATATATTTGTATATATTA	9.6
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	51	80	ATATATACAAATATATATATATATATACAT	10.2
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	51	80	ATGTATATATATATATATATTTGTATATAT	8.1
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	53	82	ATATACAAATATATATATATATATACATAT	8.4
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	55	84	ATACAAATATATATATATATATACATATAT	10.7
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	59	88	ATATATATATGTATATATATATATATATTT	8.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	61	90	ATATATATATATATATACATATATATATAT	8.3
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	61	90	ATATATATATATGTATATATATATATATAT	9.4
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	63	92	ATATATATATATATACATATATATATATAG	9.8
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	63	92	CTATATATATATATGTATATATATATATAT	10.0
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	65	94	ATATATATATATACATATATATATATAGTT	8.2
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	65	94	AACTATATATATATATGTATATATATATAT	9.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	67	96	ATATATATATACATATATATATATAGTTAT	7.7
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	71	100	TTAAATAACTATATATATATATGTATATAT	8.4
11:78696611-78696812	site	dyads_test_vs_ctrl_m3	D	5	34	TTCCATTCCCACATCCTTTTCTAAACACCT	8.1
11:85191658-85191859	site	dyads_test_vs_ctrl_m3	R	16	45	TTCGAGTATCACAACGTTCTGTCTAACTGG	7.8
11:86707074-86707275	site	dyads_test_vs_ctrl_m3	D	-18	11	ATCCAGGCGGTTAATATACTCCATAACACG	8.2
11:88049473-88049674	site	dyads_test_vs_ctrl_m3	D	69	98	ATACAGTTTTCCTTTACTCAGTACAATCTT	7.9
11:88083427-88083628	site	dyads_test_vs_ctrl_m3	R	-20	9	ATTTATAAAATTATTTTACACTAGGTACTA	7.7
11:98624944-98625145	site	dyads_test_vs_ctrl_m3	D	-69	-40	AAACAAAACTTTAATTTCCTGTACATACTC	7.6
11:98800007-98800208	site	dyads_test_vs_ctrl_m3	R	-97	-68	TAACAGGAGTCTTTCTTTCTGTATTTCCAA	7.6
12:8750134-8750335	site	dyads_test_vs_ctrl_m3	R	-83	-54	CTATAATTCTATATACATCTCTATAAACCT	9.0
12:26150409-26150610	site	dyads_test_vs_ctrl_m3	R	-73	-44	TTCCAGGGTCCTTCTCTTCTTTAGGAATTT	7.7
12:55095822-55096023	site	dyads_test_vs_ctrl_m3	R	25	54	TAAAATAAAACTCTATTTATATAAATATAT	8.7
12:82317882-82318083	site	dyads_test_vs_ctrl_m3	R	11	40	ATACAGCTCTCTTAAGTTCTCTATTATAGC	7.8
12:86881263-86881464	site	dyads_test_vs_ctrl_m3	D	44	73	AAACATACGACGAAAATAATGTCTATACAT	8.1
12:100206116-100206317	site	dyads_test_vs_ctrl_m3	R	-34	-5	CGCCATCAATATCTGCTTCTCTGATCATTT	7.9
12:100744724-100744925	site	dyads_test_vs_ctrl_m3	D	35	64	ACCCAGACGCGTTTAGTACTTCTCGATGAT	8.9
12:101058379-101058580	site	dyads_test_vs_ctrl_m3	R	-54	-25	CATCAGACATACAGAGTTCAGTATATACAA	8.7
13:9686159-9686360	site	dyads_test_vs_ctrl_m3	D	-58	-29	ATTTAAATATTCATTTTTCTCTAAGATCCA	7.6
13:66008519-66008720	site	dyads_test_vs_ctrl_m3	D	-2	27	TTCCATTGTTTTATATGATTTTCCTAACAA	7.7
13:107726003-107726204	site	dyads_test_vs_ctrl_m3	R	-76	-47	AAACAGAACACCTCCATCCTGTGATAAGTA	7.8
13:111361685-111361886	site	dyads_test_vs_ctrl_m3	R	-64	-35	CAACAGCAATATAACGTTCTGGAGCTACTA	7.9
13:111361685-111361886	site	dyads_test_vs_ctrl_m3	D	-58	-29	CTCCAGAACGTTATATTGCTGTTGGAATAT	8.7
14:13903319-13903520	site	dyads_test_vs_ctrl_m3	R	-89	-60	ATCTAACTATACTCATTTATATATAAAAAA	8.0
14:31700030-31700231	site	dyads_test_vs_ctrl_m3	D	-98	-69	CGTCTGTGTTTTATTATACTCTAAAATATA	9.0
14:52084144-52084345	site	dyads_test_vs_ctrl_m3	D	-24	5	GCCCACAATTTTGCCATACTTTGAAAAGAT	7.5
14:56959765-56959966	site	dyads_test_vs_ctrl_m3	R	-23	6	TATCATAAATATCTTTTACTAGAAGAACCC	10.7
14:120428892-120429093	site	dyads_test_vs_ctrl_m3	D	-3	26	AATAACTAAACATTGTTACTGTACATATTA	8.4
15:8358915-8359116	site	dyads_test_vs_ctrl_m3	R	17	46	TTACATTAAGACTTTCTCGTGTAAGATCTT	8.4
15:58054541-58054742	site	dyads_test_vs_ctrl_m3	R	-31	-2	ATGAATGTAAATATTGTACTTTTCAAACTC	8.1
15:76150410-76150611	site	dyads_test_vs_ctrl_m3	D	-89	-60	TACCGGCATGTCATGTTACCCAGAGAACTC	7.6
15:87473797-87473998	site	dyads_test_vs_ctrl_m3	R	-36	-7	GTCCATCCGTCCATCCATCTGTCCATCCCC	8.4
15:87473797-87473998	site	dyads_test_vs_ctrl_m3	R	-8	21	ATCCATCCGTCCGTCCGTCCATCCATCCGT	8.0
15:87473797-87473998	site	dyads_test_vs_ctrl_m3	R	-4	25	ATCCATCCATCCGTCCGTCCGTCCATCCAT	7.9
15:87473797-87473998	site	dyads_test_vs_ctrl_m3	R	0	29	ATCCATCCATCCATCCGTCCGTCCGTCCAT	8.5
15:87473797-87473998	site	dyads_test_vs_ctrl_m3	R	4	33	ATCCATCCATCCATCCATCCGTCCGTCCGT	8.3
16:31991021-31991222	site	dyads_test_vs_ctrl_m3	D	-42	-13	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
16:31991021-31991222	site	dyads_test_vs_ctrl_m3	D	34	63	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
16:33497994-33498195	site	dyads_test_vs_ctrl_m3	R	27	56	CTACAGAATATTTATTTTTTTTACTAAAAC	9.1
16:38243318-38243519	site	dyads_test_vs_ctrl_m3	R	-40	-11	GAACAGTAACTTTTTGCTCATTAATAACAG	8.2
16:38245133-38245334	site	dyads_test_vs_ctrl_m3	D	-83	-54	AAACAAAATTTATTATTATTATATATATAT	7.7
16:38245133-38245334	site	dyads_test_vs_ctrl_m3	R	-71	-42	CCACAGTCCTTTATATATATATAATAATAA	10.0
16:38245133-38245334	site	dyads_test_vs_ctrl_m3	R	-69	-40	ACCCACAGTCCTTTATATATATATAATAAT	7.7
16:52250508-52250709	site	dyads_test_vs_ctrl_m3	D	43	72	AAATATATATTCTATATTCTGTGGAAAATA	8.5
16:74197811-74198012	site	dyads_test_vs_ctrl_m3	R	37	66	CTCCAGAATCTCCTAATTCTTATTAAAAAT	7.8
16:76294177-76294378	site	dyads_test_vs_ctrl_m3	D	39	68	AGCCAGCAACGCTTCCTTCTTTACGTTTAA	9.5
16:84955073-84955274	site	dyads_test_vs_ctrl_m3	R	68	97	ACCCATCGGTGTTCATTTATAAAATAACGT	8.8
16:94692004-94692205	site	dyads_test_vs_ctrl_m3	D	-46	-17	ATCCAACATACCAATTTTCTGCTAATACAG	8.2
17:19718003-19718204	site	dyads_test_vs_ctrl_m3	R	-94	-65	ATTAAGTCATCTTATTTACTTTATTAAGAA	9.0
17:23344270-23344471	site	dyads_test_vs_ctrl_m3	R	-66	-37	GTTAAGATAGCATTAAGTCTGTAATAATAT	8.1
17:30395894-30396095	site	dyads_test_vs_ctrl_m3	D	-36	-7	ACCCAGACGCGTGTAGTACTTCTCGATGAT	8.2
17:74702371-74702572	site	dyads_test_vs_ctrl_m3	R	-29	0	TTACATAATTAGTTTCTTACATACAAATAT	7.7
17:82191826-82192027	site	dyads_test_vs_ctrl_m3	D	-56	-27	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
18:34909808-34910009	site	dyads_test_vs_ctrl_m3	D	-63	-34	GCACAGCAGTCTCGGCTACTTTCCGAACAT	11.3
18:35860873-35861074	site	dyads_test_vs_ctrl_m3	R	-5	24	GCCCAGGAAGTCTCGGTACTTTATAGATTC	8.6
18:36288773-36288974	site	dyads_test_vs_ctrl_m3	R	-79	-50	AAACCTACGTACCTTGAACTCTACAAACTT	7.6
18:38464343-38464544	site	dyads_test_vs_ctrl_m3	R	1	30	TTCGATGATTACAGAATTCTGCATTAACTA	8.2
18:46506114-46506315	site	dyads_test_vs_ctrl_m3	D	-70	-41	AAGTAAATCTCTTTTTTTATCTACAAACGT	8.3
18:51811837-51812038	site	dyads_test_vs_ctrl_m3	D	60	89	ATCCATCAATGTAATCCATTATATAAACAA	8.4
18:85848456-85848657	site	dyads_test_vs_ctrl_m3	D	9	38	CGATAGATTTCCATTTTTCGGTAGAGACCA	7.7
19:6592302-6592503	site	dyads_test_vs_ctrl_m3	D	28	57	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
19:14561454-14561655	site	dyads_test_vs_ctrl_m3	D	-35	-6	ACTTATAAAGATATTTTACAGTTAAAACCA	7.7
19:29809764-29809965	site	dyads_test_vs_ctrl_m3	D	-86	-57	TTTCATTAATTTTTCCTTCTGCGATTATAC	8.4
19:40622559-40622760	site	dyads_test_vs_ctrl_m3	R	-79	-50	CTTCACATACTCTTACTATTGTGGTAACTC	8.3
2:15631544-15631745	site	dyads_test_vs_ctrl_m3	R	-55	-26	CACTAAACATGTACTGTTCTTTGAAAATTA	7.7
2:19993021-19993222	site	dyads_test_vs_ctrl_m3	R	-80	-51	CTTCACATACTCTTACTATTGTGGTAACTC	8.3
2:30068968-30069169	site	dyads_test_vs_ctrl_m3	R	-86	-57	TGTTATATTTTTGTTCTACTTTCAAAATTT	7.7
2:37373353-37373554	site	dyads_test_vs_ctrl_m3	D	-6	23	TTCCATACTGACACCAGAATATCAAAACTA	8.1
2:64474632-64474833	site	dyads_test_vs_ctrl_m3	D	-83	-54	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
2:70023480-70023681	site	dyads_test_vs_ctrl_m3	R	-63	-34	ATACATTATACCATGTATATATAGCATCAG	7.6
2:109724142-109724343	site	dyads_test_vs_ctrl_m3	D	-63	-34	AGACAAAATTATCTATTTGTATATATACAT	8.4
2:131322086-131322287	site	dyads_test_vs_ctrl_m3	D	32	61	AGCCAATAATACAACCTTCTATCCGCATAT	9.4
2:147243322-147243523	site	dyads_test_vs_ctrl_m3	R	-88	-59	CCCCTGTAGGCTTATATTATTTAAAAACCT	9.5
2:155226364-155226565	site	dyads_test_vs_ctrl_m3	R	-92	-63	TCAAATATAACTTCTGTATTTTAAAAATAT	7.8
2:155226364-155226565	site	dyads_test_vs_ctrl_m3	R	-20	9	TTCCAGAACTAAACGTTTCTTCCATAAAAA	8.7
2:162908080-162908281	site	dyads_test_vs_ctrl_m3	R	-9	20	CTCCATCTGCCCCTGATTCTTTCCCAGCTA	7.9
3:34069069-34069270	site	dyads_test_vs_ctrl_m3	D	2	31	CGCCAGTCTTACATCGCACTTTCAGTTCCT	8.0
3:94984369-94984570	site	dyads_test_vs_ctrl_m3	D	-37	-8	CTCTATGGCTATTTCATACTTGTATAACTC	7.7
3:116560834-116561035	site	dyads_test_vs_ctrl_m3	D	-81	-52	AAACAAAACTTTAATTTCCTGTACATACTC	7.6
3:119719375-119719576	site	dyads_test_vs_ctrl_m3	D	13	42	AACCATTTTCCAAATCTTAATTACAAACTA	7.6
3:137866511-137866712	site	dyads_test_vs_ctrl_m3	D	-99	-70	TTCCAGTGGACTGTATCTCTGTGAAAAACA	7.5
3:157888666-157888867	site	dyads_test_vs_ctrl_m3	D	1	30	CGCCAGTTTCGCTTAATTTTCACATATCAG	7.9
4:73498188-73498389	site	dyads_test_vs_ctrl_m3	D	-59	-30	TGCCATCCAGTTTGTGTTCTTTCAGATCCA	8.3
4:74228178-74228379	site	dyads_test_vs_ctrl_m3	D	-57	-28	ACCCATACTTCTGGCCTTCTATCCCCACAG	7.5
4:74228178-74228379	site	dyads_test_vs_ctrl_m3	D	51	80	CGCCACCTCACTATCCCACTTTGCTAACTG	9.1
4:74303168-74303369	site	dyads_test_vs_ctrl_m3	D	-12	17	GACCATTAACCATTAATATTTTTGAAACTA	8.7
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	D	-98	-69	CTGAATATATATATATTTATATATGTATAT	9.6
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	D	-96	-67	GAATATATATATATTTATATATGTATATTA	8.1
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	R	-96	-67	TAATATACATATATAAATATATATATATTC	8.0
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	R	-94	-65	TTTAATATACATATATAAATATATATATAT	7.9
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	D	-92	-63	ATATATATATTTATATATGTATATTAAAAA	8.2
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	D	-90	-61	ATATATATTTATATATGTATATTAAAAAAA	7.5
4:106136481-106136682	site	dyads_test_vs_ctrl_m3	R	-88	-59	TTACAGACGTTCTTAATGCTACAAGAGCAG	7.9
4:119278109-119278310	site	dyads_test_vs_ctrl_m3	D	-64	-35	GGCCTTTTTTTTTTTTTTCTTAAAAAACAC	8.2
4:129715921-129716122	site	dyads_test_vs_ctrl_m3	R	57	86	ATCCATATGGACGTTATTAAAAACAAACAG	8.2
4:146277742-146277943	site	dyads_test_vs_ctrl_m3	R	56	85	ATACAGTGTATCTATGTACTATATGTGCCC	8.4
5:13526296-13526497	site	dyads_test_vs_ctrl_m3	R	-64	-35	AAACATATTATTGGTATTATTATAAAACTA	8.3
5:29833047-29833248	site	dyads_test_vs_ctrl_m3	D	24	53	GGACAATATTCTGTCTTTCTTTCCGATCCC	8.8
5:76232688-76232889	site	dyads_test_vs_ctrl_m3	D	-5	24	GACCACTTATCTTTCAAAATATCTAAACAT	8.6
5:92187897-92188098	site	dyads_test_vs_ctrl_m3	R	-12	17	GCTAATAAATCCTAGTTTCTCTATGAAATT	7.9
5:108085485-108085686	site	dyads_test_vs_ctrl_m3	D	-36	-7	AGTAACACTTTTGTGTTACTATAAAAAATT	8.1
5:110117765-110117966	site	dyads_test_vs_ctrl_m3	D	-89	-60	CACCACTATTACTATGTCCTATCATAACAT	11.7
5:149048501-149048702	site	dyads_test_vs_ctrl_m3	D	-35	-6	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
5:149048501-149048702	site	dyads_test_vs_ctrl_m3	D	41	70	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
6:16238269-16238470	site	dyads_test_vs_ctrl_m3	R	-64	-35	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
6:16238269-16238470	site	dyads_test_vs_ctrl_m3	R	52	81	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
6:31475433-31475634	site	dyads_test_vs_ctrl_m3	R	-31	-2	CTACATTACTCTTAATATTAATATAAACTA	8.7
6:31475433-31475634	site	dyads_test_vs_ctrl_m3	R	-21	8	CTCTAGCCCTCTACATTACTCTTAATATTA	8.4
6:83362600-83362801	site	dyads_test_vs_ctrl_m3	D	-45	-16	CAGCATAAATTTACTGTACTAAGATATCTA	8.9
6:98061195-98061396	site	dyads_test_vs_ctrl_m3	D	-29	0	GTTCATCTTTCTATATATCTCCCCAAAACG	8.0
6:113153052-113153253	site	dyads_test_vs_ctrl_m3	R	-48	-19	TTACATACGTTTTATATAATATACAAAGAA	11.4
6:116174085-116174286	site	dyads_test_vs_ctrl_m3	D	3	32	TTCCAGTGGACTGTATCTCTGTGAAAAACA	7.5
6:142970384-142970585	site	dyads_test_vs_ctrl_m3	D	-5	24	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
7:90208138-90208339	site	dyads_test_vs_ctrl_m3	D	-98	-69	TTACATAACATTAATATTATATCAGACCTC	9.8
7:96202699-96202900	site	dyads_test_vs_ctrl_m3	D	-74	-45	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
7:96202699-96202900	site	dyads_test_vs_ctrl_m3	D	2	31	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
7:99090278-99090479	site	dyads_test_vs_ctrl_m3	R	59	88	ATGTAGGTTTTCATTTTTCTTTTATAACGA	8.7
7:111072120-111072321	site	dyads_test_vs_ctrl_m3	D	32	61	TTACAGTTAAGAATTTTTCTGTAACAACCA	9.7
8:3995673-3995874	site	dyads_test_vs_ctrl_m3	R	68	97	CTTCAGCTGTTTTCTGTATTCTACAAACAT	8.5
8:61363928-61364129	site	dyads_test_vs_ctrl_m3	D	2	31	TCGCTTTTCCCCATATTTCTTTGTAAACTC	8.6
8:126981352-126981553	site	dyads_test_vs_ctrl_m3	D	-31	-2	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
8:126981352-126981553	site	dyads_test_vs_ctrl_m3	D	45	74	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
9:57128069-57128270	site	dyads_test_vs_ctrl_m3	R	-51	-22	GCACATCAAAGCATATTTCTTTAATAAAAA	9.7
9:72430772-72430973	site	dyads_test_vs_ctrl_m3	D	37	66	CTAAAGACACATTTGGTAGTGTGTTAACTA	7.8
9:81677768-81677969	site	dyads_test_vs_ctrl_m3	R	-67	-38	TGTTATATTTTTGTTCTACTTTCAAAATTT	7.7
9:109363602-109363803	site	dyads_test_vs_ctrl_m3	R	-38	-9	ATCCATCAATGTAATCCATTATATAAACAA	8.4
X:3084861-3085062	site	dyads_test_vs_ctrl_m3	R	70	99	ATCCATCAGCATAATCCACTATATAAACAA	10.7
X:13156341-13156542	site	dyads_test_vs_ctrl_m3	D	56	85	TGGAATGCATATATACTTTTTTATGAACGA	7.6
X:13156341-13156542	site	dyads_test_vs_ctrl_m3	D	60	89	ATGCATATATACTTTTTTATGAACGAATGG	8.7
X:51004277-51004478	site	dyads_test_vs_ctrl_m3	D	-86	-57	ATACAGATATCTATTTTATTAAAAAAGTTA	9.4
;
; Matrices
;	matrix	name                 	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	dyads_test_vs_ctrl_m3	30	4	0	-24.500	17.200	41.700	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                 	matches	scored
;	1	dyads_test_vs_ctrl_m3	186	0
;		TOTAL          	186	0
; Host name	rsat
; Job started	2025-09-18.095855
; Job done	2025-09-18.095856
; Seconds	0.27
;	user	0.27
;	system	0.01
;	cuser	0.11
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:8056450-8056651	site	dyads_test_vs_ctrl_m4	D	-82	-55	ACGCATGTTATCTTTAATGTATAAAAAT	7.9
1:8056450-8056651	site	dyads_test_vs_ctrl_m4	R	-73	-46	TGGAATTATATTTTTATACATTAAAGAT	7.9
1:19153043-19153244	site	dyads_test_vs_ctrl_m4	D	72	99	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
1:54996983-54997184	site	dyads_test_vs_ctrl_m4	D	-88	-61	TGGTAGAATAGATTACCTCTTGACAAGT	7.5
1:55000254-55000455	site	dyads_test_vs_ctrl_m4	D	68	95	CACCTAATTTTCATAATACAATCCAAAT	7.7
1:55152813-55153014	site	dyads_test_vs_ctrl_m4	D	-22	5	CCATATTATAGCTTATTTGTTTAGTATA	8.1
1:55760127-55760328	site	dyads_test_vs_ctrl_m4	R	4	31	CTAAATCGTACCCTTATACTCTCAGATA	8.5
1:63165051-63165252	site	dyads_test_vs_ctrl_m4	D	-41	-14	TTATAGATTTTCTTTTTACAGTTAACAT	7.9
1:71294884-71295085	site	dyads_test_vs_ctrl_m4	R	-58	-31	CTCAAGTTTGGCAATATTCTTCCCAAGA	8.3
1:72004272-72004473	site	dyads_test_vs_ctrl_m4	R	-9	18	TTGTAGATTCGCATGTATGTGGCCAAAG	7.9
1:86352461-86352662	site	dyads_test_vs_ctrl_m4	R	25	52	TTTAAGTAACCTTTCCTACAGTGCAACA	7.9
1:93431308-93431509	site	dyads_test_vs_ctrl_m4	D	38	65	TTGCAGTTTCTCTCCGTTTTTGCCAATA	9.3
1:95026280-95026481	site	dyads_test_vs_ctrl_m4	D	-3	24	GTCCAGCTTCGTTTATTTCATTAGATAT	8.3
1:108460137-108460338	site	dyads_test_vs_ctrl_m4	R	-77	-50	AAGGAAAATTATTTTTTTCTACAAAATT	8.3
1:108460137-108460338	site	dyads_test_vs_ctrl_m4	R	-11	16	ATATAGTATTGTTTTATACTTAAAATTA	11.5
1:108460137-108460338	site	dyads_test_vs_ctrl_m4	R	-6	21	TAAAAATATAGTATTGTTTTATACTTAA	8.2
1:146928084-146928285	site	dyads_test_vs_ctrl_m4	D	29	56	AATCATTTTTCGTTAATATTGTTCAACA	8.8
1:149343933-149344134	site	dyads_test_vs_ctrl_m4	R	-68	-41	TTAACTATTATTTTTGTACTTATAAAAA	7.6
1:149343933-149344134	site	dyads_test_vs_ctrl_m4	D	57	84	ATCAAAAATTATATGGTAGTATGCATTA	7.5
1:155097516-155097717	site	dyads_test_vs_ctrl_m4	D	-61	-34	ACGTAAAGTTACATTTTTATACAAAAAT	7.8
1:155097516-155097717	site	dyads_test_vs_ctrl_m4	R	-33	-6	GTACAGTATTTTCTCCTTCTCTGTATTG	8.9
1:162671906-162672107	site	dyads_test_vs_ctrl_m4	R	4	31	ATATAAATATATATACATATATATAATT	8.9
1:162671906-162672107	site	dyads_test_vs_ctrl_m4	D	6	33	TTATATATATGTATATATATTTATATTT	7.8
1:162671906-162672107	site	dyads_test_vs_ctrl_m4	D	10	37	ATATATGTATATATATTTATATTTATAT	8.5
1:162671906-162672107	site	dyads_test_vs_ctrl_m4	R	12	39	TTATATAAATATAAATATATATACATAT	8.0
1:162671906-162672107	site	dyads_test_vs_ctrl_m4	D	14	41	ATGTATATATATTTATATTTATATAAAA	9.7
1:162671906-162672107	site	dyads_test_vs_ctrl_m4	D	16	43	GTATATATATTTATATTTATATAAAAAG	10.4
1:164437163-164437364	site	dyads_test_vs_ctrl_m4	R	71	98	TTGTACAATTTTATTTTTTTCTGCAAGA	8.1
1:172668785-172668986	site	dyads_test_vs_ctrl_m4	D	54	81	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
10:7458743-7458944	site	dyads_test_vs_ctrl_m4	R	-1	26	CTGGGATATCTTTTTCTTCTGTGCAACC	7.7
10:20325356-20325557	site	dyads_test_vs_ctrl_m4	R	20	47	GTTTATAATTTTTTTCTTCTCTAAATCC	8.8
10:21999423-21999624	site	dyads_test_vs_ctrl_m4	R	-62	-35	TTTCAATAGGTTTTAGTTATTAACTATA	7.6
10:39822406-39822607	site	dyads_test_vs_ctrl_m4	R	-80	-53	TCTATTAATAATAATATACTTTATAATG	9.2
10:58465078-58465279	site	dyads_test_vs_ctrl_m4	R	-25	2	TTCAGGAATACTATTCTTCTTTCTGATC	7.9
10:58480024-58480225	site	dyads_test_vs_ctrl_m4	R	-81	-54	TTGTTTATTATCATAATTCTGTAAGATC	7.8
10:69019628-69019829	site	dyads_test_vs_ctrl_m4	R	-26	1	TTTGATTTATTTATTATTATATCTAAGT	8.3
10:85313742-85313943	site	dyads_test_vs_ctrl_m4	R	-77	-50	ACCTATATGAGCATCGATCTCTACAATC	7.9
10:117349231-117349432	site	dyads_test_vs_ctrl_m4	D	-16	11	ATGCAGATTTGCTTTATTCAGATCTATT	8.1
10:117815440-117815641	site	dyads_test_vs_ctrl_m4	D	-94	-67	AGGATTTACATTATTGTACTCTCCAATA	9.4
10:120923653-120923854	site	dyads_test_vs_ctrl_m4	D	29	56	ATACAGAAAGATTGGTTACTTTATATAT	9.1
10:120923653-120923854	site	dyads_test_vs_ctrl_m4	R	47	74	TTAAAATATATATATATAATATATAAAG	9.8
10:120923653-120923854	site	dyads_test_vs_ctrl_m4	D	49	76	TTATATATTATATATATATATTTTAACA	7.7
10:120923653-120923854	site	dyads_test_vs_ctrl_m4	D	51	78	ATATATTATATATATATATTTTAACACA	8.7
11:23489473-23489674	site	dyads_test_vs_ctrl_m4	D	26	53	ATTAAGTTTACTTGTATACGGAACAACC	8.6
11:30099526-30099727	site	dyads_test_vs_ctrl_m4	R	-87	-60	TAACAAATTTTCATCTTACTGCACAATC	9.8
11:41142429-41142630	site	dyads_test_vs_ctrl_m4	R	-61	-34	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
11:46243313-46243514	site	dyads_test_vs_ctrl_m4	D	62	89	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
11:63846556-63846757	site	dyads_test_vs_ctrl_m4	D	-74	-47	ATGTAGGTTTTCATTTCTCTTTCATAAC	7.7
11:65688532-65688733	site	dyads_test_vs_ctrl_m4	D	-77	-50	TTTGATAATTTTTATATACTTTCATATG	9.1
11:74077871-74078072	site	dyads_test_vs_ctrl_m4	D	-67	-40	ATGTAGGTTTTCATTTCTCTTTCATAAT	7.7
11:75765378-75765579	site	dyads_test_vs_ctrl_m4	D	14	41	GTACAGATCTGTATTGTTCTTACTGAAA	8.5
11:77529243-77529444	site	dyads_test_vs_ctrl_m4	D	16	43	AAGAATACTGACAATATACTGTACAATA	10.1
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	29	56	ATATATTATCCTGTGATTCTACTTATGG	7.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	49	76	ATATATATATATATATTTGTATATATTA	10.6
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	51	78	GTATATATATATATATATTTGTATATAT	8.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	53	80	ATGTATATATATATATATATTTGTATAT	8.6
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	D	55	82	ATACAAATATATATATATATATACATAT	10.2
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	59	86	ATATATATGTATATATATATATATATTT	8.7
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	61	88	ATATATATATGTATATATATATATATAT	9.3
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	D	63	90	ATATATATATATATACATATATATATAT	9.2
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	63	90	ATATATATATATGTATATATATATATAT	8.2
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	D	65	92	ATATATATATATACATATATATATATAG	7.7
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	65	92	CTATATATATATATGTATATATATATAT	8.7
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	D	67	94	ATATATATATACATATATATATATAGTT	8.1
11:80395716-80395917	site	dyads_test_vs_ctrl_m4	R	-22	5	ACCAAATTTACTATACTTCACTTCTAAA	7.7
11:85191658-85191859	site	dyads_test_vs_ctrl_m4	R	18	45	TTCGAGTATCACAACGTTCTGTCTAACT	11.0
11:86270155-86270356	site	dyads_test_vs_ctrl_m4	D	-19	8	ACACAGTGAACTTCATTACTGTACATGT	8.1
11:88049473-88049674	site	dyads_test_vs_ctrl_m4	D	69	96	ATACAGTTTTCCTTTACTCAGTACAATC	10.3
11:93945469-93945670	site	dyads_test_vs_ctrl_m4	D	-100	-73	GCACAGGTTTACCTCATTCTATGCAAGA	8.6
11:94292298-94292499	site	dyads_test_vs_ctrl_m4	R	-97	-70	TTGTGTATCCTTTTTGTTCTTTACAAGA	8.2
11:115724571-115724772	site	dyads_test_vs_ctrl_m4	D	33	60	TTGTAGATTCGCATGTATGTGGCCAAAG	7.9
12:3247478-3247679	site	dyads_test_vs_ctrl_m4	R	-86	-59	ATTCGGTTTCATACTCTACTTAACAATT	9.0
12:3249591-3249792	site	dyads_test_vs_ctrl_m4	R	-88	-61	TTGCGGACTATTATAATTTTCTTCAAAC	8.5
12:3249591-3249792	site	dyads_test_vs_ctrl_m4	D	-86	-59	TTGAAGAAAATTATAATAGTCCGCAAGC	7.7
12:8750134-8750335	site	dyads_test_vs_ctrl_m4	R	-81	-54	CTATAATTCTATATACATCTCTATAAAC	8.9
12:14929895-14930096	site	dyads_test_vs_ctrl_m4	R	-3	24	TTATAGTAACCTTTACAACTTTGCCATA	9.0
12:67037108-67037309	site	dyads_test_vs_ctrl_m4	D	-44	-17	ACGTAAATATTTTTAATATTTTATAATC	10.2
12:67511096-67511297	site	dyads_test_vs_ctrl_m4	R	47	74	CTGGGATATCTTTTTCTTCTGTGCAACC	7.7
12:82317882-82318083	site	dyads_test_vs_ctrl_m4	R	-97	-70	ATACAGCTCTCTTGAGTTCTCTATTATA	8.1
12:82317882-82318083	site	dyads_test_vs_ctrl_m4	R	13	40	ATACAGCTCTCTTAAGTTCTCTATTATA	8.7
12:100744724-100744925	site	dyads_test_vs_ctrl_m4	D	35	62	ACCCAGACGCGTTTAGTACTTCTCGATG	8.1
12:108815790-108815991	site	dyads_test_vs_ctrl_m4	R	-95	-68	TTAAAGTATTTTTTAAATTTTTACTACT	8.3
13:9686159-9686360	site	dyads_test_vs_ctrl_m4	R	51	78	ATTGTGTTTTCATTATTTCTTTTCAATA	9.4
13:21192171-21192372	site	dyads_test_vs_ctrl_m4	R	48	75	ATGTAAGAGCCCAATATTCTTTCCCATA	9.0
13:40063550-40063751	site	dyads_test_vs_ctrl_m4	D	-40	-13	ATAAAGATACATTATTTACTTTCCTTCA	7.8
13:51149056-51149257	site	dyads_test_vs_ctrl_m4	D	-42	-15	ATGACGATTTCCATATTTACGTCTACGA	7.7
13:66008519-66008720	site	dyads_test_vs_ctrl_m4	R	63	90	CAGCAGATTTTTTTTTATATATATATAA	9.0
13:67460533-67460734	site	dyads_test_vs_ctrl_m4	R	73	100	GTATAAATCACTTATTTTCCTTCTAATA	7.9
13:69655081-69655282	site	dyads_test_vs_ctrl_m4	R	-10	17	TTAAAGCTATATTTCAAACTATTCAAAA	7.5
13:97099401-97099602	site	dyads_test_vs_ctrl_m4	D	-93	-66	AATAAATATTATCTTATTCTTTACTCTG	7.8
13:107726003-107726204	site	dyads_test_vs_ctrl_m4	R	-1	26	ACATAGCTCTCCTGTTTTCTGTATACGT	7.9
14:16430394-16430595	site	dyads_test_vs_ctrl_m4	R	-100	-73	CTGCAAAATATTTTACTTCTTTCCTAGC	11.9
14:19417204-19417405	site	dyads_test_vs_ctrl_m4	R	67	94	TCTGTGATTTTCATTTTTCTCGCCATAT	7.6
14:20523872-20524073	site	dyads_test_vs_ctrl_m4	R	-80	-53	TATAAGAAGTTTATGTTTCATACGAAAA	8.1
14:31700030-31700231	site	dyads_test_vs_ctrl_m4	D	-98	-71	CGTCTGTGTTTTATTATACTCTAAAATA	10.1
14:56956861-56957062	site	dyads_test_vs_ctrl_m4	D	-34	-7	TTTGAATACCCTATTCTACTTTAACACT	7.7
14:73955269-73955470	site	dyads_test_vs_ctrl_m4	R	-63	-36	TTGAAGCATTTCTTAATTCTCAAAAAGC	8.5
14:98025102-98025303	site	dyads_test_vs_ctrl_m4	D	-25	2	CAGTAACTCCACATCATACTTATCAATA	8.3
14:122158883-122159084	site	dyads_test_vs_ctrl_m4	D	33	60	TTATAGGAGGCCATAATACTGATGAAAG	7.5
15:58054541-58054742	site	dyads_test_vs_ctrl_m4	R	-29	-2	ATGAATGTAAATATTGTACTTTTCAAAC	9.4
15:63931176-63931377	site	dyads_test_vs_ctrl_m4	D	-5	22	AAGCAATATTAAATATTAGTTTTCAAAA	9.6
15:73428306-73428507	site	dyads_test_vs_ctrl_m4	D	-12	15	CTGGGATATCTTTTTCTTCTGTGCAACC	7.7
15:96403283-96403484	site	dyads_test_vs_ctrl_m4	D	-62	-35	TTGTATTATTCTTCCATTCTTAATACTG	8.3
16:11220452-11220653	site	dyads_test_vs_ctrl_m4	D	-21	6	CTGTAGGTTTTCATTATTGTAGGCAATT	8.0
16:15630318-15630519	site	dyads_test_vs_ctrl_m4	D	-71	-44	AAGCAATTTCACACGTTTCTCTGAAAAA	7.8
16:31991021-31991222	site	dyads_test_vs_ctrl_m4	D	34	61	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
16:31991627-31991828	site	dyads_test_vs_ctrl_m4	D	-97	-70	ATGTAGGTTTTCATTTCTCTTTCATAAT	7.7
16:33497994-33498195	site	dyads_test_vs_ctrl_m4	R	29	56	CTACAGAATATTTATTTTTTTTACTAAA	10.7
16:38243318-38243519	site	dyads_test_vs_ctrl_m4	D	-83	-56	TTTAAGTTTTATTGTTTTGTATGTAAAT	7.5
16:38245133-38245334	site	dyads_test_vs_ctrl_m4	D	-83	-56	AAACAAAATTTATTATTATTATATATAT	9.1
16:38245133-38245334	site	dyads_test_vs_ctrl_m4	D	-81	-54	ACAAAATTTATTATTATTATATATATAT	9.7
16:52250508-52250709	site	dyads_test_vs_ctrl_m4	D	43	70	AAATATATATTCTATATTCTGTGGAAAA	8.1
16:74197811-74198012	site	dyads_test_vs_ctrl_m4	R	39	66	CTCCAGAATCTCCTAATTCTTATTAAAA	9.4
16:84955073-84955274	site	dyads_test_vs_ctrl_m4	D	44	71	AAACGGAAGGGTTTGTTTCTTTCCACGT	8.0
16:87371812-87372013	site	dyads_test_vs_ctrl_m4	R	-80	-53	CTGCAGAATACATTCTTCCTCAACAAAT	8.9
17:10206843-10207044	site	dyads_test_vs_ctrl_m4	R	15	42	ATGTATTTTTTGTCTATTCTTTATTATC	7.9
17:26269634-26269835	site	dyads_test_vs_ctrl_m4	D	5	32	GTGCTGCATACTATCCTCCTAGCCAAAT	8.4
17:74702371-74702572	site	dyads_test_vs_ctrl_m4	R	-27	0	TTACATAATTAGTTTCTTACATACAAAT	8.0
17:78375916-78376117	site	dyads_test_vs_ctrl_m4	R	57	84	TATAATAATAAATTAATTTTTTTTAAGT	7.6
17:78375916-78376117	site	dyads_test_vs_ctrl_m4	D	67	94	AATTAATTTATTATTATAATGACCTAAT	8.1
17:79864923-79865124	site	dyads_test_vs_ctrl_m4	D	-97	-70	GTACATTTTAACATATTAATCATTAATA	8.7
17:82191826-82192027	site	dyads_test_vs_ctrl_m4	D	-56	-29	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
17:82191826-82192027	site	dyads_test_vs_ctrl_m4	R	0	27	GCGCAGTTTTTTTTTCTTGTCTATAAAG	10.3
17:83425037-83425238	site	dyads_test_vs_ctrl_m4	R	-1	26	ATAACTAATTTATTATTTTTATTCAATA	8.0
17:83425037-83425238	site	dyads_test_vs_ctrl_m4	D	49	76	ACGCACTTTATTATTTTGCTTTTTAAGT	7.7
18:7679541-7679742	site	dyads_test_vs_ctrl_m4	D	45	72	ATGCATATTTATTTGTTTATTTATTTAT	8.1
18:34909808-34910009	site	dyads_test_vs_ctrl_m4	D	-63	-36	GCACAGCAGTCTCGGCTACTTTCCGAAC	8.1
18:42071288-42071489	site	dyads_test_vs_ctrl_m4	D	-6	21	TTTTAATATTATTTACTTATTTTTATTT	8.0
18:46506114-46506315	site	dyads_test_vs_ctrl_m4	D	-70	-43	AAGTAAATCTCTTTTTTTATCTACAAAC	9.5
18:73592182-73592383	site	dyads_test_vs_ctrl_m4	D	49	76	TATCAATATAGTTTAGTATTTGCTAATT	8.8
18:79856329-79856530	site	dyads_test_vs_ctrl_m4	R	-27	0	CTGTCTAATTCTTTATTAATTTAAAATA	8.2
18:79856329-79856530	site	dyads_test_vs_ctrl_m4	R	-9	18	GTTATTATGCCTATCATTCTGTCTAATT	8.1
18:79856329-79856530	site	dyads_test_vs_ctrl_m4	D	42	69	TTTCTGATTTATTTTATTTTAATCAAAT	7.6
18:79856329-79856530	site	dyads_test_vs_ctrl_m4	D	67	94	AATTATAATTACATCTTTTTCTCCTACC	8.4
18:84082530-84082731	site	dyads_test_vs_ctrl_m4	D	64	91	TGGTATTTTTGTATTTTTTTATATAAGG	9.1
18:85848456-85848657	site	dyads_test_vs_ctrl_m4	D	9	36	CGATAGATTTCCATTTTTCGGTAGAGAC	7.9
19:6592878-6593079	site	dyads_test_vs_ctrl_m4	D	23	50	ATGTAGGTTTTCATTTCTCTTTCATAAC	7.7
19:21280422-21280623	site	dyads_test_vs_ctrl_m4	R	32	59	ATGTAGTAATTTTATATTCTCTGGATTT	8.2
19:28763056-28763257	site	dyads_test_vs_ctrl_m4	R	12	39	GGTCAGGTGGCCATTCTTCTGTTCAAAT	8.5
19:41214718-41214919	site	dyads_test_vs_ctrl_m4	R	10	37	ATGCAGTAGGCTTTACTACAGTACATGG	10.0
19:61175553-61175754	site	dyads_test_vs_ctrl_m4	D	-58	-31	CATTAGACATTCTTTTTTCTCTACCACG	7.9
2:9041229-9041430	site	dyads_test_vs_ctrl_m4	D	41	68	TCACAAAATCCGATGCTTCTTTCACAGA	7.8
2:15631544-15631745	site	dyads_test_vs_ctrl_m4	D	-71	-44	TTTTAAAATTCAATTTTAATTTTCAAAG	7.9
2:22554307-22554508	site	dyads_test_vs_ctrl_m4	R	-48	-21	CCACAGTTATGTTTATATCTAAACCATA	7.8
2:30068968-30069169	site	dyads_test_vs_ctrl_m4	R	-84	-57	TGTTATATTTTTGTTCTACTTTCAAAAT	8.9
2:30068968-30069169	site	dyads_test_vs_ctrl_m4	R	-76	-49	GCGGAGTTTGTTATATTTTTGTTCTACT	9.1
2:37429653-37429854	site	dyads_test_vs_ctrl_m4	R	36	63	GTGATGTATCCATTTATATTAACGATAC	7.7
2:64474632-64474833	site	dyads_test_vs_ctrl_m4	D	-83	-56	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
2:70023480-70023681	site	dyads_test_vs_ctrl_m4	R	-61	-34	ATACATTATACCATGTATATATAGCATC	8.6
2:72970852-72971053	site	dyads_test_vs_ctrl_m4	R	30	57	GGAAATATTACCTTTGTACCAATCAATA	7.7
2:104428319-104428520	site	dyads_test_vs_ctrl_m4	D	9	36	CTACAATATACTTGAGGTCTATGCAAAA	8.8
2:109724142-109724343	site	dyads_test_vs_ctrl_m4	D	-63	-36	AGACAAAATTATCTATTTGTATATATAC	8.0
2:122011897-122012098	site	dyads_test_vs_ctrl_m4	R	-10	17	ATACAAAATATCAAACTTCTCTTTAGAA	7.9
2:155390752-155390953	site	dyads_test_vs_ctrl_m4	D	-84	-57	ACACTATATAATAAAATTATTTACAACA	8.4
3:13669877-13670078	site	dyads_test_vs_ctrl_m4	D	-68	-41	ATGTAGGTTTTCATTTCTCTTTCATAAC	7.7
3:16214339-16214540	site	dyads_test_vs_ctrl_m4	R	-25	2	GATTATTTTGCTTTTAATCTGTCAAATA	8.6
3:54810647-54810848	site	dyads_test_vs_ctrl_m4	R	-85	-58	TCGAATTAGAGTCGATTTCTCTATAACA	8.2
3:90361374-90361575	site	dyads_test_vs_ctrl_m4	R	69	96	TTCATGTTTTTTTTTTTTCTACACAATG	8.1
3:152233525-152233726	site	dyads_test_vs_ctrl_m4	R	-86	-59	ATGTAGTCTAATATATTAATATGCAAAG	10.2
3:152233525-152233726	site	dyads_test_vs_ctrl_m4	D	-84	-57	TTGCATATTAATATATTAGACTACATGC	8.2
4:29603907-29604108	site	dyads_test_vs_ctrl_m4	D	-91	-64	ATATAATATATGTCAAATATTTACAATA	7.7
4:82294688-82294889	site	dyads_test_vs_ctrl_m4	D	-98	-71	CTGAATATATATATATTTATATATGTAT	7.9
4:82294688-82294889	site	dyads_test_vs_ctrl_m4	D	-94	-67	ATATATATATATTTATATATGTATATTA	8.8
4:82294688-82294889	site	dyads_test_vs_ctrl_m4	D	-92	-65	ATATATATATTTATATATGTATATTAAA	7.9
4:82294688-82294889	site	dyads_test_vs_ctrl_m4	D	-90	-63	ATATATATTTATATATGTATATTAAAAA	9.0
4:82294688-82294889	site	dyads_test_vs_ctrl_m4	D	46	73	AAAAAGCATACATTATTTCTTTTTTAAA	8.1
4:95632907-95633108	site	dyads_test_vs_ctrl_m4	D	-31	-4	ATTATTATTATTATTATTATTTACCATT	8.8
4:135867227-135867428	site	dyads_test_vs_ctrl_m4	R	-39	-12	ATGTAGTTTTCGATAATTCTTTTATCTT	8.5
4:146277742-146277943	site	dyads_test_vs_ctrl_m4	R	58	85	ATACAGTGTATCTATGTACTATATGTGC	8.5
5:22612641-22612842	site	dyads_test_vs_ctrl_m4	D	-75	-48	CTGGGATATCTTTTTCTTCTGTGCAACC	7.7
5:22693550-22693751	site	dyads_test_vs_ctrl_m4	D	27	54	GCGAAGATCAAAATTCTTCTTTACAATT	9.6
5:29833047-29833248	site	dyads_test_vs_ctrl_m4	D	24	51	GGACAATATTCTGTCTTTCTTTCCGATC	10.4
5:32491031-32491232	site	dyads_test_vs_ctrl_m4	D	58	85	GTAAAGGATCTTAAATTTTTTTCTAATA	8.3
5:108085485-108085686	site	dyads_test_vs_ctrl_m4	D	-15	12	TAAAAAATTACTTATTTTATTTATATGA	7.6
5:115298600-115298801	site	dyads_test_vs_ctrl_m4	R	3	30	GGTCAGGTGGCCATTCTTCTGTTCAAAT	8.5
5:149048501-149048702	site	dyads_test_vs_ctrl_m4	D	41	68	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
6:10600556-10600757	site	dyads_test_vs_ctrl_m4	D	-82	-55	ATATATATTTGGTTTCTACTATTAAAGT	9.7
6:16238269-16238470	site	dyads_test_vs_ctrl_m4	R	-62	-35	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
6:44792892-44793093	site	dyads_test_vs_ctrl_m4	R	-75	-48	GCATAGTTCACCATCTAAGTATCCAATA	7.5
6:71683735-71683936	site	dyads_test_vs_ctrl_m4	D	46	73	ATAAAGCTTCCCTCGTGTCTGTACATAG	8.0
6:83362600-83362801	site	dyads_test_vs_ctrl_m4	R	-84	-57	TTGTATAATTTTTACCTTTTTGTTAATA	7.7
6:98061195-98061396	site	dyads_test_vs_ctrl_m4	D	-29	-2	GTTCATCTTTCTATATATCTCCCCAAAA	9.7
6:113153052-113153253	site	dyads_test_vs_ctrl_m4	R	-46	-19	TTACATACGTTTTATATAATATACAAAG	9.7
6:142970384-142970585	site	dyads_test_vs_ctrl_m4	D	73	100	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
7:25792624-25792825	site	dyads_test_vs_ctrl_m4	D	63	90	TAACTGAATAGCTTCATATTTTCTAAGT	8.0
7:36118675-36118876	site	dyads_test_vs_ctrl_m4	R	-14	13	CTGGGATATCTTTTTCTTCTGTGCAACC	7.7
7:59276223-59276424	site	dyads_test_vs_ctrl_m4	R	-63	-36	GTGGAGATTACTATTCTCCATTACAATA	10.3
7:90208138-90208339	site	dyads_test_vs_ctrl_m4	D	-45	-18	TCACAGTATGTTTGATTTTTATCCACAA	8.6
7:96202699-96202900	site	dyads_test_vs_ctrl_m4	D	2	29	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
7:96202699-96202900	site	dyads_test_vs_ctrl_m4	R	58	85	GCGCAGTTTTTTTTTCTTGTCTATAAAG	10.3
7:99090278-99090479	site	dyads_test_vs_ctrl_m4	R	61	88	ATGTAGGTTTTCATTTTTCTTTTATAAC	9.9
7:111072120-111072321	site	dyads_test_vs_ctrl_m4	D	32	59	TTACAGTTAAGAATTTTTCTGTAACAAC	7.6
7:123194182-123194383	site	dyads_test_vs_ctrl_m4	R	-99	-72	TTACAGTATGCATAGTTACTGATCTCGG	7.6
8:61121319-61121520	site	dyads_test_vs_ctrl_m4	R	-81	-54	GTGAAAATTATTTAACTACTATTTAGTA	8.7
8:61363928-61364129	site	dyads_test_vs_ctrl_m4	D	2	29	TCGCTTTTCCCCATATTTCTTTGTAAAC	8.5
8:81195096-81195297	site	dyads_test_vs_ctrl_m4	D	66	93	TATAAGAGTACTAGTTTTCATTTAAATT	7.7
8:89146331-89146532	site	dyads_test_vs_ctrl_m4	R	17	44	TATTTACATTTTATATTTTTGTACATAT	7.6
8:102633596-102633797	site	dyads_test_vs_ctrl_m4	R	-81	-54	TTTAAAGTTCTTATTTTAGTATACATAC	8.3
8:126981352-126981553	site	dyads_test_vs_ctrl_m4	D	45	72	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
9:3022432-3022633	site	dyads_test_vs_ctrl_m4	D	-85	-58	TCAATGATTTTCATTTTTCTTGCCATAT	7.6
9:47466142-47466343	site	dyads_test_vs_ctrl_m4	R	28	55	TCACTGTATTTTTTTTTCCTCACCAATC	7.7
9:81677768-81677969	site	dyads_test_vs_ctrl_m4	R	-65	-38	TGTTATATTTTTGTTCTACTTTCAAAAT	8.9
9:81677768-81677969	site	dyads_test_vs_ctrl_m4	R	-57	-30	GCGGAGTTTGTTATATTTTTGTTCTACT	9.1
9:88479724-88479925	site	dyads_test_vs_ctrl_m4	D	-79	-52	AAAAATATTTTTTTAATTCTTTCTACAC	9.3
9:100957175-100957376	site	dyads_test_vs_ctrl_m4	R	21	48	TATTTGAATCTCACTATTCTATAGAAAA	7.9
X:3084861-3085062	site	dyads_test_vs_ctrl_m4	D	-71	-44	CTGTATATTGCTTTTATTATGTTTAGGT	8.4
X:13156341-13156542	site	dyads_test_vs_ctrl_m4	D	60	87	ATGCATATATACTTTTTTATGAACGAAT	8.7
X:20272752-20272953	site	dyads_test_vs_ctrl_m4	R	-51	-24	CATTGGCTTTCTTTATTTCTCTACATAT	8.1
X:32254213-32254414	site	dyads_test_vs_ctrl_m4	R	-21	6	TAAAATATTGCTATACTAAATTATAAAA	7.8
X:38183283-38183484	site	dyads_test_vs_ctrl_m4	R	-7	20	TACAAAAAGTTTTTTTTTCTTTTAAATA	8.5
X:51004277-51004478	site	dyads_test_vs_ctrl_m4	D	-86	-59	ATACAGATATCTATTTTATTAAAAAAGT	9.0
X:56155758-56155959	site	dyads_test_vs_ctrl_m4	R	-52	-25	TAGAATTAGGGTCGATTTCTCTATAACA	7.5
X:61785809-61786010	site	dyads_test_vs_ctrl_m4	R	-51	-24	ACTCAGTAGTCCATATTGCTATCTCATC	7.7
X:96485266-96485467	site	dyads_test_vs_ctrl_m4	R	16	43	CTGGGATATCTTTTTCTTCTGTGCAACC	7.7
X:146176106-146176307	site	dyads_test_vs_ctrl_m4	R	-57	-30	ATGTAGGTTTTCATTTCTCTTTCATAAC	7.7
;
; Matrices
;	matrix	name                 	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	dyads_test_vs_ctrl_m4	28	4	0	-24.600	17.500	42.100	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                 	matches	scored
;	1	dyads_test_vs_ctrl_m4	215	0
;		TOTAL          	215	0
; Host name	rsat
; Job started	2025-09-18.095857
; Job done	2025-09-18.095857
; Seconds	0.26
;	user	0.26
;	system	0.02
;	cuser	0.08
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:14839904-14840105	site	oligos_6nt_test_vs_ctrl_m1	R	-87	-78	AAATGGAGGA	7.6
1:24613180-24613381	site	oligos_6nt_test_vs_ctrl_m1	D	-78	-69	AAATGGAGAC	7.6
1:24613180-24613381	site	oligos_6nt_test_vs_ctrl_m1	D	68	77	ACATGGAGTC	7.7
1:36472236-36472437	site	oligos_6nt_test_vs_ctrl_m1	D	-22	-13	CGATGGAGCT	8.1
1:55014753-55014954	site	oligos_6nt_test_vs_ctrl_m1	R	29	38	TGATGGAGAC	7.6
1:55760127-55760328	site	oligos_6nt_test_vs_ctrl_m1	R	-49	-40	AAATGGAGAC	7.6
1:63058063-63058264	site	oligos_6nt_test_vs_ctrl_m1	D	-98	-89	CTATGGAGCT	7.5
1:75216069-75216270	site	oligos_6nt_test_vs_ctrl_m1	D	84	93	TGATGGAGGA	7.6
1:97935099-97935300	site	oligos_6nt_test_vs_ctrl_m1	D	52	61	ACATGGAGTG	7.8
1:139446980-139447181	site	oligos_6nt_test_vs_ctrl_m1	D	19	28	CAATGGAGTA	7.5
1:156786766-156786967	site	oligos_6nt_test_vs_ctrl_m1	D	-56	-47	AGATGGAGAA	8.1
1:157175654-157175855	site	oligos_6nt_test_vs_ctrl_m1	R	47	56	CTATGGAGCA	7.7
1:161726737-161726938	site	oligos_6nt_test_vs_ctrl_m1	R	79	88	CCATGGAGAC	7.5
1:180093957-180094158	site	oligos_6nt_test_vs_ctrl_m1	D	-26	-17	TCATGGAGAT	7.8
1:184037289-184037490	site	oligos_6nt_test_vs_ctrl_m1	D	-10	-1	TCATGGAGTA	8.0
1:189277591-189277792	site	oligos_6nt_test_vs_ctrl_m1	R	63	72	GCATGGAGAT	7.8
10:8601218-8601419	site	oligos_6nt_test_vs_ctrl_m1	R	-86	-77	CCATGGAGCG	8.1
10:14746811-14747012	site	oligos_6nt_test_vs_ctrl_m1	D	24	33	CCATGGAGGA	7.5
10:30011723-30011924	site	oligos_6nt_test_vs_ctrl_m1	D	-24	-15	ACATGGAGAA	8.2
10:30781417-30781618	site	oligos_6nt_test_vs_ctrl_m1	R	-84	-75	AGATGGAGAA	8.1
10:31250289-31250490	site	oligos_6nt_test_vs_ctrl_m1	R	-69	-60	AGATGGAGTT	7.7
10:40566180-40566381	site	oligos_6nt_test_vs_ctrl_m1	D	14	23	TGATGGAGGA	7.6
10:58480024-58480225	site	oligos_6nt_test_vs_ctrl_m1	D	75	84	AGATGGAGAA	8.1
10:62764325-62764526	site	oligos_6nt_test_vs_ctrl_m1	R	-99	-90	TGATGGAGAA	7.7
10:73202476-73202677	site	oligos_6nt_test_vs_ctrl_m1	D	-89	-80	TTATGGAGGA	8.1
10:73202476-73202677	site	oligos_6nt_test_vs_ctrl_m1	D	-26	-17	CTATGGAGGT	8.0
10:73202476-73202677	site	oligos_6nt_test_vs_ctrl_m1	D	-5	4	CTATGGAGCA	7.7
10:80293829-80294030	site	oligos_6nt_test_vs_ctrl_m1	R	67	76	TGATGGAGAA	7.7
10:84738423-84738624	site	oligos_6nt_test_vs_ctrl_m1	D	-11	-2	GCATGGAGGA	7.6
10:84738423-84738624	site	oligos_6nt_test_vs_ctrl_m1	D	29	38	GCATGGAGGA	7.6
10:84738423-84738624	site	oligos_6nt_test_vs_ctrl_m1	D	69	78	GCATGGAGGA	7.6
10:85907638-85907839	site	oligos_6nt_test_vs_ctrl_m1	R	76	85	CCATGGAGAA	7.6
10:116972810-116973011	site	oligos_6nt_test_vs_ctrl_m1	D	-69	-60	TGATGGAGAA	7.7
10:116972810-116973011	site	oligos_6nt_test_vs_ctrl_m1	R	80	89	CCATGGAGAA	7.6
10:119216409-119216610	site	oligos_6nt_test_vs_ctrl_m1	D	4	13	ACATGGAGTC	7.7
10:128076614-128076815	site	oligos_6nt_test_vs_ctrl_m1	D	39	48	GCATGGAGGA	7.6
10:128438180-128438381	site	oligos_6nt_test_vs_ctrl_m1	R	-83	-74	CGATGGAGGC	8.2
10:128679305-128679506	site	oligos_6nt_test_vs_ctrl_m1	D	63	72	GGATGGAGGT	7.7
10:129665038-129665239	site	oligos_6nt_test_vs_ctrl_m1	D	71	80	AAATGGAGGA	7.6
10:129665519-129665720	site	oligos_6nt_test_vs_ctrl_m1	R	-62	-53	TAATGGAGAA	7.9
11:5080527-5080728	site	oligos_6nt_test_vs_ctrl_m1	R	-51	-42	ATATGGAGAG	8.6
11:16515123-16515324	site	oligos_6nt_test_vs_ctrl_m1	D	-6	3	TGATGGAGTA	8.0
11:17199750-17199951	site	oligos_6nt_test_vs_ctrl_m1	D	-5	4	ACATGGAGTT	7.8
11:31934624-31934825	site	oligos_6nt_test_vs_ctrl_m1	R	-55	-46	GTATGGAGAA	8.4
11:69680169-69680370	site	oligos_6nt_test_vs_ctrl_m1	R	-80	-71	CCATGGAGGA	7.5
11:69990038-69990239	site	oligos_6nt_test_vs_ctrl_m1	D	46	55	TTATGGAGTC	7.6
11:73611547-73611748	site	oligos_6nt_test_vs_ctrl_m1	R	-61	-52	CAATGGAGTA	7.5
11:75724927-75725128	site	oligos_6nt_test_vs_ctrl_m1	D	-17	-8	GGATGGAGAG	7.7
11:77295443-77295644	site	oligos_6nt_test_vs_ctrl_m1	D	-19	-10	ACATGGAGAG	8.1
11:78160160-78160361	site	oligos_6nt_test_vs_ctrl_m1	D	-28	-19	AGATGGAGAG	8.0
11:78272016-78272217	site	oligos_6nt_test_vs_ctrl_m1	D	-41	-32	GCATGGAGAG	7.6
11:86707074-86707275	site	oligos_6nt_test_vs_ctrl_m1	R	-2	7	TTATGGAGTA	8.4
11:88051011-88051212	site	oligos_6nt_test_vs_ctrl_m1	D	-35	-26	TCATGGAGCG	8.2
11:97969034-97969235	site	oligos_6nt_test_vs_ctrl_m1	D	-70	-61	GCATGGAGAT	7.8
11:100257460-100257661	site	oligos_6nt_test_vs_ctrl_m1	R	-32	-23	AGATGGAGCA	7.7
11:100320907-100321108	site	oligos_6nt_test_vs_ctrl_m1	D	-22	-13	ATATGGAGAA	8.7
11:100958963-100959164	site	oligos_6nt_test_vs_ctrl_m1	R	5	14	AGATGGAGAA	8.1
11:100970068-100970269	site	oligos_6nt_test_vs_ctrl_m1	R	41	50	AGATGGAGGG	7.8
11:102605760-102605961	site	oligos_6nt_test_vs_ctrl_m1	R	-94	-85	AGATGGAGCT	7.5
11:109396165-109396366	site	oligos_6nt_test_vs_ctrl_m1	R	-64	-55	TTATGGAGAC	8.1
11:120347703-120347904	site	oligos_6nt_test_vs_ctrl_m1	R	-56	-47	ACATGGAGAA	8.2
12:4226489-4226690	site	oligos_6nt_test_vs_ctrl_m1	D	-76	-67	GCATGGAGGA	7.6
12:11252195-11252396	site	oligos_6nt_test_vs_ctrl_m1	D	84	93	GTATGGAGGG	8.1
12:18364940-18365141	site	oligos_6nt_test_vs_ctrl_m1	D	-65	-56	TCATGGAGGT	7.6
12:18364940-18365141	site	oligos_6nt_test_vs_ctrl_m1	D	-36	-27	CTATGGAGCA	7.7
12:34385176-34385377	site	oligos_6nt_test_vs_ctrl_m1	D	-18	-9	ACATGGAGTT	7.8
12:35773186-35773387	site	oligos_6nt_test_vs_ctrl_m1	R	29	38	TCATGGAGGT	7.6
12:51134690-51134891	site	oligos_6nt_test_vs_ctrl_m1	D	81	90	GGATGGAGAT	7.9
12:110639725-110639926	site	oligos_6nt_test_vs_ctrl_m1	R	40	49	GCATGGAGAA	7.7
12:110640562-110640763	site	oligos_6nt_test_vs_ctrl_m1	D	62	71	ACATGGAGGT	8.1
12:110793493-110793694	site	oligos_6nt_test_vs_ctrl_m1	D	58	67	CTATGGAGTT	7.7
12:116507537-116507738	site	oligos_6nt_test_vs_ctrl_m1	R	25	34	AAATGGAGAT	7.7
13:24812698-24812899	site	oligos_6nt_test_vs_ctrl_m1	D	-17	-8	AAATGGAGAA	7.7
13:34074546-34074747	site	oligos_6nt_test_vs_ctrl_m1	R	-64	-55	AGATGGAGTT	7.7
13:35991102-35991303	site	oligos_6nt_test_vs_ctrl_m1	R	-72	-63	GCATGGAGTA	8.0
13:64624414-64624615	site	oligos_6nt_test_vs_ctrl_m1	R	3	12	CTATGGAGAA	8.1
13:64914168-64914369	site	oligos_6nt_test_vs_ctrl_m1	D	-64	-55	ATATGGAGAA	8.7
13:81065637-81065838	site	oligos_6nt_test_vs_ctrl_m1	R	36	45	CGATGGAGGG	8.4
13:98842738-98842939	site	oligos_6nt_test_vs_ctrl_m1	R	60	69	AAATGGAGAG	7.5
13:107726003-107726204	site	oligos_6nt_test_vs_ctrl_m1	D	-65	-56	GGATGGAGGT	7.7
13:108671041-108671242	site	oligos_6nt_test_vs_ctrl_m1	R	77	86	TCATGGAGAG	7.6
13:116153831-116154032	site	oligos_6nt_test_vs_ctrl_m1	R	86	95	ACATGGAGCT	7.7
13:119699751-119699952	site	oligos_6nt_test_vs_ctrl_m1	D	48	57	TGATGGAGAG	7.6
14:8800014-8800215	site	oligos_6nt_test_vs_ctrl_m1	R	-15	-6	GGATGGAGAT	7.9
14:18270227-18270428	site	oligos_6nt_test_vs_ctrl_m1	R	86	95	CTATGGAGGA	8.0
14:40006417-40006618	site	oligos_6nt_test_vs_ctrl_m1	D	-71	-62	ATATGGAGAA	8.7
14:53213783-53213984	site	oligos_6nt_test_vs_ctrl_m1	D	79	88	CTATGGAGGA	8.0
14:54468347-54468548	site	oligos_6nt_test_vs_ctrl_m1	D	73	82	CGATGGAGCG	9.1
14:61324887-61325088	site	oligos_6nt_test_vs_ctrl_m1	R	-97	-88	CTATGGAGGT	8.0
14:92603330-92603531	site	oligos_6nt_test_vs_ctrl_m1	D	79	88	TAATGGAGGT	7.8
15:8351574-8351775	site	oligos_6nt_test_vs_ctrl_m1	D	-61	-52	TTATGGAGTC	7.6
15:8928677-8928878	site	oligos_6nt_test_vs_ctrl_m1	R	60	69	CCATGGAGAA	7.6
15:12136444-12136645	site	oligos_6nt_test_vs_ctrl_m1	D	28	37	ATATGGAGGC	8.2
15:18164006-18164207	site	oligos_6nt_test_vs_ctrl_m1	D	-52	-43	CCATGGAGAA	7.6
15:37868261-37868462	site	oligos_6nt_test_vs_ctrl_m1	D	-78	-69	CTATGGAGGA	8.0
15:50746993-50747194	site	oligos_6nt_test_vs_ctrl_m1	D	77	86	ACATGGAGTC	7.7
15:58900176-58900377	site	oligos_6nt_test_vs_ctrl_m1	D	-92	-83	AAATGGAGTA	7.9
15:59211518-59211719	site	oligos_6nt_test_vs_ctrl_m1	D	-89	-80	GCATGGAGGA	7.6
15:73343126-73343327	site	oligos_6nt_test_vs_ctrl_m1	R	-79	-70	GCATGGAGAT	7.8
15:74094235-74094436	site	oligos_6nt_test_vs_ctrl_m1	D	73	82	CTATGGAGCT	7.5
15:77079096-77079297	site	oligos_6nt_test_vs_ctrl_m1	D	-90	-81	ACATGGAGAG	8.1
15:93234384-93234585	site	oligos_6nt_test_vs_ctrl_m1	R	-20	-11	ACATGGAGCG	8.7
15:99034084-99034285	site	oligos_6nt_test_vs_ctrl_m1	R	-82	-73	GGATGGAGAT	7.9
15:102409493-102409694	site	oligos_6nt_test_vs_ctrl_m1	R	20	29	GCATGGAGGA	7.6
16:8830409-8830610	site	oligos_6nt_test_vs_ctrl_m1	D	-52	-43	GGATGGAGGA	7.7
16:11393358-11393559	site	oligos_6nt_test_vs_ctrl_m1	D	-81	-72	TGATGGAGAT	7.8
16:20661561-20661762	site	oligos_6nt_test_vs_ctrl_m1	R	38	47	AGATGGAGTT	7.7
16:23016902-23017103	site	oligos_6nt_test_vs_ctrl_m1	R	57	66	AGATGGAGTA	8.4
16:30065512-30065713	site	oligos_6nt_test_vs_ctrl_m1	D	-9	0	TAATGGAGAA	7.9
16:32631588-32631789	site	oligos_6nt_test_vs_ctrl_m1	R	-9	0	ATATGGAGAT	8.7
16:38108699-38108900	site	oligos_6nt_test_vs_ctrl_m1	R	-47	-38	AGATGGAGCT	7.5
16:48218849-48219050	site	oligos_6nt_test_vs_ctrl_m1	D	-1	8	TTATGGAGTC	7.6
16:50665995-50666196	site	oligos_6nt_test_vs_ctrl_m1	R	47	56	TCATGGAGGA	7.7
16:53985218-53985419	site	oligos_6nt_test_vs_ctrl_m1	D	-10	-1	TTATGGAGCA	7.7
16:53985218-53985419	site	oligos_6nt_test_vs_ctrl_m1	R	7	16	TGATGGAGAT	7.8
16:85644707-85644908	site	oligos_6nt_test_vs_ctrl_m1	R	-64	-55	CGATGGAGTG	8.2
17:3044566-3044767	site	oligos_6nt_test_vs_ctrl_m1	R	-26	-17	TCATGGAGAC	7.7
17:3044566-3044767	site	oligos_6nt_test_vs_ctrl_m1	D	42	51	AGATGGAGGC	7.6
17:4880952-4881153	site	oligos_6nt_test_vs_ctrl_m1	D	-8	1	CCATGGAGCG	8.1
17:20661619-20661820	site	oligos_6nt_test_vs_ctrl_m1	D	-19	-10	TAATGGAGAC	7.8
17:20661619-20661820	site	oligos_6nt_test_vs_ctrl_m1	D	44	53	ACATGGAGCT	7.7
17:33650112-33650313	site	oligos_6nt_test_vs_ctrl_m1	R	-74	-65	CCATGGAGCG	8.1
17:35244257-35244458	site	oligos_6nt_test_vs_ctrl_m1	R	-35	-26	ACATGGAGCC	7.5
17:35244257-35244458	site	oligos_6nt_test_vs_ctrl_m1	R	76	85	AAATGGAGAC	7.6
17:45568911-45569112	site	oligos_6nt_test_vs_ctrl_m1	R	-87	-78	AAATGGAGGA	7.6
17:78491587-78491788	site	oligos_6nt_test_vs_ctrl_m1	D	42	51	AAATGGAGAT	7.7
17:79934084-79934285	site	oligos_6nt_test_vs_ctrl_m1	R	79	88	AGATGGAGAT	8.2
17:90616092-90616293	site	oligos_6nt_test_vs_ctrl_m1	D	-68	-59	AGATGGAGAA	8.1
18:6490582-6490783	site	oligos_6nt_test_vs_ctrl_m1	D	-13	-4	TCATGGAGAA	7.8
18:6760438-6760639	site	oligos_6nt_test_vs_ctrl_m1	D	-100	-91	AAATGGAGAT	7.7
18:15989114-15989315	site	oligos_6nt_test_vs_ctrl_m1	D	-77	-68	GTATGGAGCG	8.9
18:34803502-34803703	site	oligos_6nt_test_vs_ctrl_m1	D	8	17	TGATGGAGGT	7.6
18:35859045-35859246	site	oligos_6nt_test_vs_ctrl_m1	D	-39	-30	ACATGGAGGC	7.7
18:36287712-36287913	site	oligos_6nt_test_vs_ctrl_m1	D	-31	-22	CTATGGAGTG	7.6
18:38360121-38360322	site	oligos_6nt_test_vs_ctrl_m1	D	75	84	GGATGGAGAT	7.9
18:38714421-38714622	site	oligos_6nt_test_vs_ctrl_m1	D	39	48	AGATGGAGGG	7.8
18:46506114-46506315	site	oligos_6nt_test_vs_ctrl_m1	R	90	99	AGATGGAGAA	8.1
18:47112302-47112503	site	oligos_6nt_test_vs_ctrl_m1	D	0	9	ATATGGAGGC	8.2
18:64288561-64288762	site	oligos_6nt_test_vs_ctrl_m1	D	-93	-84	CCATGGAGAA	7.6
18:64288561-64288762	site	oligos_6nt_test_vs_ctrl_m1	R	56	65	TGATGGAGAA	7.7
18:67205805-67206006	site	oligos_6nt_test_vs_ctrl_m1	D	88	97	ACATGGAGCT	7.7
18:82339543-82339744	site	oligos_6nt_test_vs_ctrl_m1	D	51	60	GCATGGAGGA	7.6
18:87474103-87474304	site	oligos_6nt_test_vs_ctrl_m1	R	48	57	CCATGGAGCG	8.1
19:4787798-4787999	site	oligos_6nt_test_vs_ctrl_m1	R	-32	-23	ATATGGAGCA	8.3
19:5493561-5493762	site	oligos_6nt_test_vs_ctrl_m1	R	5	14	GGATGGAGGG	7.5
19:6374059-6374260	site	oligos_6nt_test_vs_ctrl_m1	D	-73	-64	GCATGGAGGT	7.6
19:6376346-6376547	site	oligos_6nt_test_vs_ctrl_m1	R	10	19	ATATGGAGCC	8.0
19:9002719-9002920	site	oligos_6nt_test_vs_ctrl_m1	R	49	58	GCATGGAGAT	7.8
19:9008854-9009055	site	oligos_6nt_test_vs_ctrl_m1	R	91	100	GCATGGAGAT	7.8
19:11121759-11121960	site	oligos_6nt_test_vs_ctrl_m1	D	77	86	GTATGGAGGA	8.3
19:28033621-28033822	site	oligos_6nt_test_vs_ctrl_m1	D	-38	-29	CTATGGAGAG	8.0
19:39054283-39054484	site	oligos_6nt_test_vs_ctrl_m1	R	-39	-30	AAATGGAGCG	8.1
19:40561358-40561559	site	oligos_6nt_test_vs_ctrl_m1	R	54	63	TTATGGAGTT	7.7
19:40621964-40622165	site	oligos_6nt_test_vs_ctrl_m1	D	-66	-57	TTATGGAGTT	7.7
19:40622559-40622760	site	oligos_6nt_test_vs_ctrl_m1	D	-84	-75	GTATGGAGTT	8.0
2:7076199-7076400	site	oligos_6nt_test_vs_ctrl_m1	D	3	12	ACATGGAGCG	8.7
2:19993021-19993222	site	oligos_6nt_test_vs_ctrl_m1	D	-85	-76	GTATGGAGTT	8.0
2:23650662-23650863	site	oligos_6nt_test_vs_ctrl_m1	R	-55	-46	CCATGGAGGA	7.5
2:23650662-23650863	site	oligos_6nt_test_vs_ctrl_m1	R	57	66	ATATGGAGGA	8.6
2:24593420-24593621	site	oligos_6nt_test_vs_ctrl_m1	R	-41	-32	ACATGGAGAT	8.3
2:30472797-30472998	site	oligos_6nt_test_vs_ctrl_m1	D	30	39	AGATGGAGAT	8.2
2:36389246-36389447	site	oligos_6nt_test_vs_ctrl_m1	D	14	23	AAATGGAGGA	7.6
2:36389646-36389847	site	oligos_6nt_test_vs_ctrl_m1	D	-81	-72	AGATGGAGAT	8.2
2:36389646-36389847	site	oligos_6nt_test_vs_ctrl_m1	R	-33	-24	TAATGGAGAA	7.9
2:51871179-51871380	site	oligos_6nt_test_vs_ctrl_m1	R	-92	-83	CCATGGAGCG	8.1
2:57112086-57112287	site	oligos_6nt_test_vs_ctrl_m1	D	-18	-9	TAATGGAGGA	7.8
2:72938019-72938220	site	oligos_6nt_test_vs_ctrl_m1	R	-53	-44	CAATGGAGTA	7.5
2:91773049-91773250	site	oligos_6nt_test_vs_ctrl_m1	D	-32	-23	AGATGGAGGG	7.8
2:116527923-116528124	site	oligos_6nt_test_vs_ctrl_m1	R	-18	-9	TTATGGAGAC	8.1
2:127238440-127238641	site	oligos_6nt_test_vs_ctrl_m1	D	-19	-10	TCATGGAGAT	7.8
2:127238440-127238641	site	oligos_6nt_test_vs_ctrl_m1	D	-13	-4	AGATGGAGGA	8.0
2:129208236-129208437	site	oligos_6nt_test_vs_ctrl_m1	D	-74	-65	AAATGGAGAC	7.6
2:131936894-131937095	site	oligos_6nt_test_vs_ctrl_m1	D	45	54	TGATGGAGCG	8.2
2:140073108-140073309	site	oligos_6nt_test_vs_ctrl_m1	R	18	27	CTATGGAGGA	8.0
2:143989994-143990195	site	oligos_6nt_test_vs_ctrl_m1	D	51	60	TCATGGAGAA	7.8
2:152829430-152829631	site	oligos_6nt_test_vs_ctrl_m1	R	55	64	GGATGGAGTA	8.1
2:153187220-153187421	site	oligos_6nt_test_vs_ctrl_m1	R	-84	-75	AGATGGAGCT	7.5
2:153317439-153317640	site	oligos_6nt_test_vs_ctrl_m1	D	86	95	AGATGGAGGA	8.0
2:156790073-156790274	site	oligos_6nt_test_vs_ctrl_m1	R	81	90	ACATGGAGCT	7.7
2:157557994-157558195	site	oligos_6nt_test_vs_ctrl_m1	D	-23	-14	ACATGGAGTG	7.8
2:162908080-162908281	site	oligos_6nt_test_vs_ctrl_m1	D	-36	-27	CTATGGAGGA	8.0
2:162908080-162908281	site	oligos_6nt_test_vs_ctrl_m1	D	13	22	AGATGGAGCA	7.7
3:8882271-8882472	site	oligos_6nt_test_vs_ctrl_m1	R	-35	-26	GGATGGAGAT	7.9
3:21049949-21050150	site	oligos_6nt_test_vs_ctrl_m1	D	-90	-81	AGATGGAGTC	7.6
3:34069069-34069270	site	oligos_6nt_test_vs_ctrl_m1	R	28	37	AAATGGAGGA	7.6
3:35895396-35895597	site	oligos_6nt_test_vs_ctrl_m1	D	-41	-32	GAATGGAGTA	7.8
3:37599597-37599798	site	oligos_6nt_test_vs_ctrl_m1	R	51	60	TGATGGAGGA	7.6
3:58548716-58548917	site	oligos_6nt_test_vs_ctrl_m1	D	-24	-15	AAATGGAGAA	7.7
3:60529080-60529281	site	oligos_6nt_test_vs_ctrl_m1	R	-87	-78	CGATGGAGTT	8.3
3:60628787-60628988	site	oligos_6nt_test_vs_ctrl_m1	R	42	51	GTATGGAGTG	8.0
3:65947862-65948063	site	oligos_6nt_test_vs_ctrl_m1	D	-2	7	TAATGGAGAC	7.8
3:65950076-65950277	site	oligos_6nt_test_vs_ctrl_m1	R	91	100	TGATGGAGAA	7.7
3:65951447-65951648	site	oligos_6nt_test_vs_ctrl_m1	R	69	78	AAATGGAGAT	7.7
3:69567022-69567223	site	oligos_6nt_test_vs_ctrl_m1	R	-1	8	CCATGGAGAA	7.6
3:76042639-76042840	site	oligos_6nt_test_vs_ctrl_m1	R	87	96	AAATGGAGGT	7.6
3:87207786-87207987	site	oligos_6nt_test_vs_ctrl_m1	D	-19	-10	ATATGGAGGG	8.4
3:88502916-88503117	site	oligos_6nt_test_vs_ctrl_m1	R	79	88	CCATGGAGAC	7.5
3:90213162-90213363	site	oligos_6nt_test_vs_ctrl_m1	D	72	81	TAATGGAGGA	7.8
3:90341773-90341974	site	oligos_6nt_test_vs_ctrl_m1	D	37	46	TCATGGAGAC	7.7
3:90487410-90487611	site	oligos_6nt_test_vs_ctrl_m1	D	89	98	GCATGGAGAC	7.6
3:92228084-92228285	site	oligos_6nt_test_vs_ctrl_m1	R	-57	-48	TGATGGAGAT	7.8
3:92262892-92263093	site	oligos_6nt_test_vs_ctrl_m1	R	-63	-54	TGATGGAGAT	7.8
3:93235191-93235392	site	oligos_6nt_test_vs_ctrl_m1	R	35	44	TCATGGAGAT	7.8
3:95895458-95895659	site	oligos_6nt_test_vs_ctrl_m1	D	-23	-14	CCATGGAGAC	7.5
3:95896664-95896865	site	oligos_6nt_test_vs_ctrl_m1	R	51	60	AGATGGAGAA	8.1
3:124385707-124385908	site	oligos_6nt_test_vs_ctrl_m1	D	79	88	GGATGGAGAT	7.9
3:144625607-144625808	site	oligos_6nt_test_vs_ctrl_m1	D	-35	-26	TGATGGAGAA	7.7
3:152186623-152186824	site	oligos_6nt_test_vs_ctrl_m1	R	81	90	AGATGGAGAT	8.2
3:154132429-154132630	site	oligos_6nt_test_vs_ctrl_m1	R	-61	-52	ATATGGAGGG	8.4
4:12232809-12233010	site	oligos_6nt_test_vs_ctrl_m1	D	-79	-70	AAATGGAGGT	7.6
4:29603907-29604108	site	oligos_6nt_test_vs_ctrl_m1	D	49	58	TAATGGAGAT	8.0
4:40732784-40732985	site	oligos_6nt_test_vs_ctrl_m1	D	-5	4	TAATGGAGAA	7.9
4:43519359-43519560	site	oligos_6nt_test_vs_ctrl_m1	R	-7	2	AGATGGAGCT	7.5
4:58486622-58486823	site	oligos_6nt_test_vs_ctrl_m1	D	77	86	GTATGGAGCT	7.9
4:72851762-72851963	site	oligos_6nt_test_vs_ctrl_m1	R	42	51	TCATGGAGAA	7.8
4:75131266-75131467	site	oligos_6nt_test_vs_ctrl_m1	R	-86	-77	ACATGGAGCT	7.7
4:106136481-106136682	site	oligos_6nt_test_vs_ctrl_m1	R	0	9	AGATGGAGTA	8.4
4:112955080-112955281	site	oligos_6nt_test_vs_ctrl_m1	R	-45	-36	CCATGGAGGA	7.5
4:117728761-117728962	site	oligos_6nt_test_vs_ctrl_m1	R	-63	-54	AGATGGAGTG	7.7
4:117728761-117728962	site	oligos_6nt_test_vs_ctrl_m1	R	-38	-29	ACATGGAGTG	7.8
4:122859954-122860155	site	oligos_6nt_test_vs_ctrl_m1	R	19	28	GTATGGAGAC	8.3
4:123350733-123350934	site	oligos_6nt_test_vs_ctrl_m1	D	5	14	GTATGGAGCA	8.0
4:129002208-129002409	site	oligos_6nt_test_vs_ctrl_m1	D	75	84	TCATGGAGAA	7.8
4:129083765-129083966	site	oligos_6nt_test_vs_ctrl_m1	R	-52	-43	ACATGGAGCG	8.7
4:130730320-130730521	site	oligos_6nt_test_vs_ctrl_m1	D	-15	-6	ACATGGAGTC	7.7
4:138311782-138311983	site	oligos_6nt_test_vs_ctrl_m1	R	26	35	TCATGGAGAA	7.8
4:146101931-146102132	site	oligos_6nt_test_vs_ctrl_m1	R	60	69	AAATGGAGGA	7.6
4:147738067-147738268	site	oligos_6nt_test_vs_ctrl_m1	D	-50	-41	TGATGGAGAA	7.7
5:3691844-3692045	site	oligos_6nt_test_vs_ctrl_m1	R	73	82	CCATGGAGAC	7.5
5:9260891-9261092	site	oligos_6nt_test_vs_ctrl_m1	R	83	92	ACATGGAGAG	8.1
5:24256794-24256995	site	oligos_6nt_test_vs_ctrl_m1	D	84	93	AAATGGAGGA	7.6
5:24803354-24803555	site	oligos_6nt_test_vs_ctrl_m1	D	17	26	AAATGGAGGT	7.6
5:30906550-30906751	site	oligos_6nt_test_vs_ctrl_m1	R	-38	-29	CTATGGAGCA	7.7
5:30906550-30906751	site	oligos_6nt_test_vs_ctrl_m1	R	82	91	AGATGGAGGG	7.8
5:32480694-32480895	site	oligos_6nt_test_vs_ctrl_m1	D	-62	-53	ATATGGAGGT	8.6
5:36615258-36615459	site	oligos_6nt_test_vs_ctrl_m1	R	6	15	GTATGGAGTT	8.0
5:45734110-45734311	site	oligos_6nt_test_vs_ctrl_m1	D	-100	-91	TGATGGAGGT	7.6
5:46414420-46414621	site	oligos_6nt_test_vs_ctrl_m1	D	35	44	AAATGGAGAT	7.7
5:72626952-72627153	site	oligos_6nt_test_vs_ctrl_m1	R	-57	-48	AGATGGAGAT	8.2
5:72914534-72914735	site	oligos_6nt_test_vs_ctrl_m1	D	-12	-3	GCATGGAGGA	7.6
5:88838541-88838742	site	oligos_6nt_test_vs_ctrl_m1	R	-52	-43	GCATGGAGGT	7.6
5:88838541-88838742	site	oligos_6nt_test_vs_ctrl_m1	R	2	11	ACATGGAGCT	7.7
5:91806539-91806740	site	oligos_6nt_test_vs_ctrl_m1	R	0	9	CCATGGAGCG	8.1
5:93187620-93187821	site	oligos_6nt_test_vs_ctrl_m1	R	-81	-72	AAATGGAGAA	7.7
5:122172769-122172970	site	oligos_6nt_test_vs_ctrl_m1	R	42	51	TTATGGAGAA	8.2
5:140760788-140760989	site	oligos_6nt_test_vs_ctrl_m1	D	-68	-59	TGATGGAGAC	7.6
5:140760788-140760989	site	oligos_6nt_test_vs_ctrl_m1	R	15	24	TCATGGAGGA	7.7
5:142905298-142905499	site	oligos_6nt_test_vs_ctrl_m1	R	-50	-41	ACATGGAGAA	8.2
5:146261012-146261213	site	oligos_6nt_test_vs_ctrl_m1	R	42	51	AGATGGAGTT	7.7
5:146575840-146576041	site	oligos_6nt_test_vs_ctrl_m1	D	-38	-29	CGATGGAGAC	8.6
5:146575840-146576041	site	oligos_6nt_test_vs_ctrl_m1	D	73	82	GCATGGAGGT	7.6
6:26933359-26933560	site	oligos_6nt_test_vs_ctrl_m1	R	3	12	ATATGGAGAA	8.7
6:35509200-35509401	site	oligos_6nt_test_vs_ctrl_m1	R	-59	-50	GTATGGAGGA	8.3
6:35509200-35509401	site	oligos_6nt_test_vs_ctrl_m1	R	-33	-24	AAATGGAGAA	7.7
6:37686746-37686947	site	oligos_6nt_test_vs_ctrl_m1	R	31	40	CGATGGAGAG	8.6
6:46529892-46530093	site	oligos_6nt_test_vs_ctrl_m1	D	-78	-69	ACATGGAGTG	7.8
6:47045692-47045893	site	oligos_6nt_test_vs_ctrl_m1	D	-10	-1	AAATGGAGAA	7.7
6:48524866-48525067	site	oligos_6nt_test_vs_ctrl_m1	R	-2	7	TAATGGAGGG	7.6
6:58017742-58017943	site	oligos_6nt_test_vs_ctrl_m1	R	17	26	TGATGGAGAA	7.7
6:75297539-75297740	site	oligos_6nt_test_vs_ctrl_m1	D	53	62	CCATGGAGGA	7.5
6:83601197-83601398	site	oligos_6nt_test_vs_ctrl_m1	R	46	55	CTATGGAGGC	7.6
6:84812506-84812707	site	oligos_6nt_test_vs_ctrl_m1	D	-57	-48	CCATGGAGAA	7.6
6:85844241-85844442	site	oligos_6nt_test_vs_ctrl_m1	D	60	69	AGATGGAGCA	7.7
6:87948433-87948634	site	oligos_6nt_test_vs_ctrl_m1	R	8	17	AGATGGAGGC	7.6
6:88578208-88578409	site	oligos_6nt_test_vs_ctrl_m1	D	37	46	TTATGGAGGC	7.7
6:93137662-93137863	site	oligos_6nt_test_vs_ctrl_m1	R	-89	-80	CCATGGAGAA	7.6
6:95141818-95142019	site	oligos_6nt_test_vs_ctrl_m1	R	78	87	ATATGGAGAA	8.7
6:96032919-96033120	site	oligos_6nt_test_vs_ctrl_m1	R	27	36	TGATGGAGAT	7.8
6:99877814-99878015	site	oligos_6nt_test_vs_ctrl_m1	R	-92	-83	AGATGGAGAA	8.1
6:108882223-108882424	site	oligos_6nt_test_vs_ctrl_m1	D	69	78	ACATGGAGAA	8.2
6:113153052-113153253	site	oligos_6nt_test_vs_ctrl_m1	R	-14	-5	AAATGGAGAG	7.5
6:113447378-113447579	site	oligos_6nt_test_vs_ctrl_m1	R	-7	2	TCATGGAGAG	7.6
6:113447378-113447579	site	oligos_6nt_test_vs_ctrl_m1	R	17	26	CGATGGAGAA	8.7
6:113447378-113447579	site	oligos_6nt_test_vs_ctrl_m1	D	45	54	GCATGGAGAT	7.8
6:122644459-122644660	site	oligos_6nt_test_vs_ctrl_m1	D	-59	-50	CCATGGAGAA	7.6
6:122698827-122699028	site	oligos_6nt_test_vs_ctrl_m1	R	64	73	CTATGGAGGA	8.0
6:124811331-124811532	site	oligos_6nt_test_vs_ctrl_m1	R	83	92	TTATGGAGGT	8.0
6:126879595-126879796	site	oligos_6nt_test_vs_ctrl_m1	R	30	39	ACATGGAGTG	7.8
7:5128988-5129189	site	oligos_6nt_test_vs_ctrl_m1	R	45	54	ACATGGAGAA	8.2
7:11845439-11845640	site	oligos_6nt_test_vs_ctrl_m1	D	22	31	GGATGGAGAG	7.7
7:16499029-16499230	site	oligos_6nt_test_vs_ctrl_m1	D	40	49	TGATGGAGAA	7.7
7:16917046-16917247	site	oligos_6nt_test_vs_ctrl_m1	R	-53	-44	TGATGGAGAT	7.8
7:23357598-23357799	site	oligos_6nt_test_vs_ctrl_m1	D	6	15	AGATGGAGAA	8.1
7:39589112-39589313	site	oligos_6nt_test_vs_ctrl_m1	R	-91	-82	AGATGGAGAC	8.0
7:39589610-39589811	site	oligos_6nt_test_vs_ctrl_m1	D	-7	2	ACATGGAGTT	7.8
7:42020738-42020939	site	oligos_6nt_test_vs_ctrl_m1	R	-88	-79	CTATGGAGCT	7.5
7:59276223-59276424	site	oligos_6nt_test_vs_ctrl_m1	D	-58	-49	TAATGGAGAA	7.9
7:73541424-73541625	site	oligos_6nt_test_vs_ctrl_m1	D	-64	-55	AAATGGAGGT	7.6
7:79790241-79790442	site	oligos_6nt_test_vs_ctrl_m1	R	38	47	ATATGGAGAA	8.7
7:97595219-97595420	site	oligos_6nt_test_vs_ctrl_m1	R	85	94	CTATGGAGGA	8.0
7:100264911-100265112	site	oligos_6nt_test_vs_ctrl_m1	D	82	91	ATATGGAGTC	8.2
7:104748147-104748348	site	oligos_6nt_test_vs_ctrl_m1	R	62	71	GCATGGAGGA	7.6
7:119740647-119740848	site	oligos_6nt_test_vs_ctrl_m1	D	-76	-67	CTATGGAGCA	7.7
7:119740647-119740848	site	oligos_6nt_test_vs_ctrl_m1	R	83	92	TTATGGAGAA	8.2
7:123170342-123170543	site	oligos_6nt_test_vs_ctrl_m1	D	24	33	TAATGGAGAG	7.8
7:126492092-126492293	site	oligos_6nt_test_vs_ctrl_m1	D	-61	-52	TCATGGAGGT	7.6
7:132998815-132999016	site	oligos_6nt_test_vs_ctrl_m1	D	76	85	CCATGGAGAT	7.7
8:3995673-3995874	site	oligos_6nt_test_vs_ctrl_m1	R	-71	-62	ATATGGAGAT	8.7
8:4040161-4040362	site	oligos_6nt_test_vs_ctrl_m1	D	-96	-87	GGATGGAGAG	7.7
8:4088349-4088550	site	oligos_6nt_test_vs_ctrl_m1	D	-17	-8	TCATGGAGAT	7.8
8:33615460-33615661	site	oligos_6nt_test_vs_ctrl_m1	R	-88	-79	GGATGGAGAC	7.7
8:46229099-46229300	site	oligos_6nt_test_vs_ctrl_m1	D	34	43	ACATGGAGAA	8.2
8:61121319-61121520	site	oligos_6nt_test_vs_ctrl_m1	R	-28	-19	GAATGGAGAT	7.5
8:72304838-72305039	site	oligos_6nt_test_vs_ctrl_m1	R	21	30	AAATGGAGAT	7.7
8:78505746-78505947	site	oligos_6nt_test_vs_ctrl_m1	R	-43	-34	TTATGGAGGA	8.1
8:80111162-80111363	site	oligos_6nt_test_vs_ctrl_m1	R	-3	6	ATATGGAGAG	8.6
8:92360510-92360711	site	oligos_6nt_test_vs_ctrl_m1	R	-99	-90	GCATGGAGAG	7.6
8:100031214-100031415	site	oligos_6nt_test_vs_ctrl_m1	R	77	86	AGATGGAGTT	7.7
8:107339009-107339210	site	oligos_6nt_test_vs_ctrl_m1	D	23	32	GGATGGAGGA	7.7
8:122683641-122683842	site	oligos_6nt_test_vs_ctrl_m1	R	-18	-9	TTATGGAGCA	7.7
8:123421397-123421598	site	oligos_6nt_test_vs_ctrl_m1	D	45	54	AGATGGAGTT	7.7
8:123893251-123893452	site	oligos_6nt_test_vs_ctrl_m1	R	-9	0	ACATGGAGAA	8.2
8:125995539-125995740	site	oligos_6nt_test_vs_ctrl_m1	D	80	89	TTATGGAGTG	7.7
9:47466142-47466343	site	oligos_6nt_test_vs_ctrl_m1	D	-73	-64	AGATGGAGCA	7.7
9:71844372-71844573	site	oligos_6nt_test_vs_ctrl_m1	R	28	37	CTATGGAGTA	8.4
9:78175375-78175576	site	oligos_6nt_test_vs_ctrl_m1	D	46	55	ACATGGAGCG	8.7
9:78820865-78821066	site	oligos_6nt_test_vs_ctrl_m1	R	-89	-80	ATATGGAGAA	8.7
9:84973923-84974124	site	oligos_6nt_test_vs_ctrl_m1	R	-28	-19	GCATGGAGAC	7.6
9:91098357-91098558	site	oligos_6nt_test_vs_ctrl_m1	D	-79	-70	GCATGGAGGA	7.6
9:98577277-98577478	site	oligos_6nt_test_vs_ctrl_m1	D	63	72	AGATGGAGAA	8.1
9:100497751-100497952	site	oligos_6nt_test_vs_ctrl_m1	R	-68	-59	TCATGGAGAA	7.8
9:107616175-107616376	site	oligos_6nt_test_vs_ctrl_m1	D	-40	-31	TGATGGAGGT	7.6
9:113958757-113958958	site	oligos_6nt_test_vs_ctrl_m1	D	11	20	AGATGGAGAA	8.1
9:118837629-118837830	site	oligos_6nt_test_vs_ctrl_m1	R	-18	-9	ATATGGAGAA	8.7
9:120957442-120957643	site	oligos_6nt_test_vs_ctrl_m1	R	-36	-27	CTATGGAGAA	8.1
X:13156341-13156542	site	oligos_6nt_test_vs_ctrl_m1	D	-77	-68	TGATGGAGAT	7.8
X:13169423-13169624	site	oligos_6nt_test_vs_ctrl_m1	D	68	77	ACATGGAGTG	7.8
X:13179532-13179733	site	oligos_6nt_test_vs_ctrl_m1	D	55	64	ACATGGAGTG	7.8
X:13189605-13189806	site	oligos_6nt_test_vs_ctrl_m1	D	77	86	ACATGGAGTG	7.8
X:13203599-13203800	site	oligos_6nt_test_vs_ctrl_m1	D	13	22	CCATGGAGGA	7.5
X:18254359-18254560	site	oligos_6nt_test_vs_ctrl_m1	D	-91	-82	CCATGGAGAT	7.7
X:33581522-33581723	site	oligos_6nt_test_vs_ctrl_m1	D	86	95	TGATGGAGCG	8.2
X:38193419-38193620	site	oligos_6nt_test_vs_ctrl_m1	D	-84	-75	TAATGGAGGG	7.6
X:38631489-38631690	site	oligos_6nt_test_vs_ctrl_m1	R	-24	-15	GGATGGAGGA	7.7
X:51004277-51004478	site	oligos_6nt_test_vs_ctrl_m1	R	-95	-86	TTATGGAGGC	7.7
X:62775911-62776112	site	oligos_6nt_test_vs_ctrl_m1	R	65	74	CGATGGAGGC	8.2
X:74171692-74171893	site	oligos_6nt_test_vs_ctrl_m1	D	3	12	CCATGGAGGA	7.5
X:74225060-74225261	site	oligos_6nt_test_vs_ctrl_m1	D	-67	-58	TGATGGAGAT	7.8
X:74261135-74261336	site	oligos_6nt_test_vs_ctrl_m1	D	33	42	ATATGGAGAA	8.7
X:75987173-75987374	site	oligos_6nt_test_vs_ctrl_m1	D	-22	-13	TGATGGAGAA	7.7
X:81822322-81822523	site	oligos_6nt_test_vs_ctrl_m1	R	24	33	TTATGGAGCA	7.7
X:94078745-94078946	site	oligos_6nt_test_vs_ctrl_m1	D	60	69	GAATGGAGAT	7.5
X:101768947-101769148	site	oligos_6nt_test_vs_ctrl_m1	D	-7	2	AGATGGAGAA	8.1
X:126750631-126750832	site	oligos_6nt_test_vs_ctrl_m1	D	-76	-67	AAATGGAGGA	7.6
X:133094454-133094655	site	oligos_6nt_test_vs_ctrl_m1	D	-84	-75	GTATGGAGGC	7.9
X:136271361-136271562	site	oligos_6nt_test_vs_ctrl_m1	D	53	62	AGATGGAGAT	8.2
X:136271361-136271562	site	oligos_6nt_test_vs_ctrl_m1	D	76	85	TCATGGAGGA	7.7
X:139968299-139968500	site	oligos_6nt_test_vs_ctrl_m1	D	-35	-26	ACATGGAGCC	7.5
X:141980390-141980591	site	oligos_6nt_test_vs_ctrl_m1	R	36	45	TCATGGAGAT	7.8
X:142211516-142211717	site	oligos_6nt_test_vs_ctrl_m1	D	34	43	TCATGGAGGA	7.7
X:151907233-151907434	site	oligos_6nt_test_vs_ctrl_m1	R	-84	-75	AGATGGAGAA	8.1
X:152027775-152027976	site	oligos_6nt_test_vs_ctrl_m1	D	21	30	GGATGGAGGA	7.7
;
; Matrices
;	matrix	name                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_test_vs_ctrl_m1	10	4	0	-32.100	8.800	40.900	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                      	matches	scored
;	1	oligos_6nt_test_vs_ctrl_m1	352	0
;		TOTAL          	352	0
; Host name	rsat
; Job started	2025-09-18.095847
; Job done	2025-09-18.095848
; Seconds	0.27
;	user	0.27
;	system	0.03
;	cuser	0.1
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:6247971-6248172	site	oligos_7nt_test_vs_ctrl_m1	D	-37	-27	TAGAAACTAAA	8.9
1:46193630-46193831	site	oligos_7nt_test_vs_ctrl_m1	D	-38	-28	TAGAAACTACC	9.1
1:99524210-99524411	site	oligos_7nt_test_vs_ctrl_m1	R	-56	-46	AAGAAACTAGT	8.6
1:119787766-119787967	site	oligos_7nt_test_vs_ctrl_m1	D	67	77	AAGAAACTAGG	7.6
1:155845393-155845594	site	oligos_7nt_test_vs_ctrl_m1	R	-42	-32	TAGAAACTACA	9.5
1:177450518-177450719	site	oligos_7nt_test_vs_ctrl_m1	R	-32	-22	GTGAAACTAAG	7.8
10:39822406-39822607	site	oligos_7nt_test_vs_ctrl_m1	D	-28	-18	GTGAAACTAGG	7.7
10:115431878-115432079	site	oligos_7nt_test_vs_ctrl_m1	R	-33	-23	TGGAAACTAGT	8.2
11:50379468-50379669	site	oligos_7nt_test_vs_ctrl_m1	D	25	35	GAGAAACTATG	8.5
11:65688532-65688733	site	oligos_7nt_test_vs_ctrl_m1	R	76	86	TATAAACTATA	8.1
11:75070956-75071157	site	oligos_7nt_test_vs_ctrl_m1	R	-100	-90	AAGAAACTAGG	7.6
11:84832690-84832891	site	oligos_7nt_test_vs_ctrl_m1	D	23	33	ACGAAACTAAA	9.0
12:34385176-34385377	site	oligos_7nt_test_vs_ctrl_m1	D	71	81	GTTAAACTATA	7.5
12:40036117-40036318	site	oligos_7nt_test_vs_ctrl_m1	R	-19	-9	GAGAAACTACA	9.2
12:51768899-51769100	site	oligos_7nt_test_vs_ctrl_m1	D	33	43	CTGAAACTATA	9.2
12:105838741-105838942	site	oligos_7nt_test_vs_ctrl_m1	R	-75	-65	TGGAAACTAGA	8.0
12:109359254-109359455	site	oligos_7nt_test_vs_ctrl_m1	R	57	67	GAGAAACTAAT	8.8
13:63446963-63447164	site	oligos_7nt_test_vs_ctrl_m1	R	-3	7	ACGAAACTAGA	9.0
13:111718164-111718365	site	oligos_7nt_test_vs_ctrl_m1	D	52	62	GGGAAACTATT	8.9
14:37655439-37655640	site	oligos_7nt_test_vs_ctrl_m1	R	-98	-88	AAGAAACTAAA	8.5
15:71794713-71794914	site	oligos_7nt_test_vs_ctrl_m1	D	17	27	TATAAACTACG	7.7
15:102498532-102498733	site	oligos_7nt_test_vs_ctrl_m1	R	-55	-45	CAGAAACTACA	8.8
15:103244280-103244481	site	oligos_7nt_test_vs_ctrl_m1	R	69	79	CAGAAACTAAA	8.2
16:8843031-8843232	site	oligos_7nt_test_vs_ctrl_m1	D	49	59	CGGAAACTAGC	8.4
16:20656549-20656750	site	oligos_7nt_test_vs_ctrl_m1	R	41	51	ATGAAACTATA	9.7
16:30067583-30067784	site	oligos_7nt_test_vs_ctrl_m1	D	81	91	GAGAAAATATA	7.7
16:38243318-38243519	site	oligos_7nt_test_vs_ctrl_m1	R	47	57	TTAAAACTATA	7.7
17:10206843-10207044	site	oligos_7nt_test_vs_ctrl_m1	D	2	12	ATGAAACTACT	9.1
17:39636739-39636940	site	oligos_7nt_test_vs_ctrl_m1	D	-98	-88	CAGAAACTAAA	8.2
17:74702371-74702572	site	oligos_7nt_test_vs_ctrl_m1	D	-17	-7	AAGAAACTAAT	8.7
17:74702371-74702572	site	oligos_7nt_test_vs_ctrl_m1	D	13	23	CTGAAACTATA	9.2
17:78491587-78491788	site	oligos_7nt_test_vs_ctrl_m1	D	-50	-40	TGGAAACTACT	8.7
18:35860873-35861074	site	oligos_7nt_test_vs_ctrl_m1	D	-7	3	ACGAATCTATA	7.5
18:36610291-36610492	site	oligos_7nt_test_vs_ctrl_m1	D	13	23	TGGAAACTACG	8.9
18:90311815-90312016	site	oligos_7nt_test_vs_ctrl_m1	R	-28	-18	CAGAAACTACA	8.8
19:14561454-14561655	site	oligos_7nt_test_vs_ctrl_m1	D	54	64	GATAAACTATA	7.8
19:24550692-24550893	site	oligos_7nt_test_vs_ctrl_m1	R	-59	-49	GTGAAACTAAA	8.5
19:29809764-29809965	site	oligos_7nt_test_vs_ctrl_m1	R	-91	-81	ATGAAACTATT	9.2
19:39052767-39052968	site	oligos_7nt_test_vs_ctrl_m1	R	-56	-46	AGGAAACTATA	9.4
2:5961449-5961650	site	oligos_7nt_test_vs_ctrl_m1	R	-58	-48	CAGAAACTAAT	8.4
2:23224970-23225171	site	oligos_7nt_test_vs_ctrl_m1	D	48	58	AAGAAACTAGA	8.5
2:37374413-37374614	site	oligos_7nt_test_vs_ctrl_m1	D	11	21	CAGAAACTATT	8.8
2:72936978-72937179	site	oligos_7nt_test_vs_ctrl_m1	R	-29	-19	TAGAAACTAGA	8.9
2:103766550-103766751	site	oligos_7nt_test_vs_ctrl_m1	R	-41	-31	AGGAAACTATT	8.9
2:107309854-107310055	site	oligos_7nt_test_vs_ctrl_m1	R	-64	-54	ATGAAACTATA	9.7
2:122220088-122220289	site	oligos_7nt_test_vs_ctrl_m1	D	50	60	AAGAAACTAGG	7.6
2:155390752-155390953	site	oligos_7nt_test_vs_ctrl_m1	D	67	77	GTGAAACTAAT	8.8
2:156056391-156056592	site	oligos_7nt_test_vs_ctrl_m1	D	35	45	AGGAAACTAAA	8.2
2:156178847-156179048	site	oligos_7nt_test_vs_ctrl_m1	D	46	56	GTGAAACTACT	9.2
3:136935211-136935412	site	oligos_7nt_test_vs_ctrl_m1	D	86	96	AATAAACTATA	7.7
4:74303168-74303369	site	oligos_7nt_test_vs_ctrl_m1	D	9	19	TTGAAACTATT	8.8
4:80534466-80534667	site	oligos_7nt_test_vs_ctrl_m1	D	-62	-52	GTGAAACTATA	9.7
4:135867227-135867428	site	oligos_7nt_test_vs_ctrl_m1	D	64	74	TGGAAACTAAT	8.3
5:45692954-45693155	site	oligos_7nt_test_vs_ctrl_m1	D	56	66	AGGAAACTAGA	8.2
5:92187897-92188098	site	oligos_7nt_test_vs_ctrl_m1	D	-54	-44	GAGAAACTAAA	8.6
5:92187897-92188098	site	oligos_7nt_test_vs_ctrl_m1	D	-3	7	GAGAAACTAGG	7.8
5:109543469-109543670	site	oligos_7nt_test_vs_ctrl_m1	D	-45	-35	TTGAAACTATA	9.4
6:6351040-6351241	site	oligos_7nt_test_vs_ctrl_m1	D	-56	-46	CAGAAACTAAA	8.2
6:31475433-31475634	site	oligos_7nt_test_vs_ctrl_m1	R	-40	-30	TATAAACTATA	8.1
6:31475433-31475634	site	oligos_7nt_test_vs_ctrl_m1	R	-33	-23	TATAAACTATA	8.1
6:71683735-71683936	site	oligos_7nt_test_vs_ctrl_m1	D	-92	-82	AAGAAACTACT	9.1
6:134541666-134541867	site	oligos_7nt_test_vs_ctrl_m1	R	-17	-7	CTGAAACTAAT	8.2
6:134924326-134924527	site	oligos_7nt_test_vs_ctrl_m1	R	60	70	TAAAAACTATA	7.8
7:7062290-7062491	site	oligos_7nt_test_vs_ctrl_m1	R	-20	-10	ATAAAACTATA	8.0
7:10656593-10656794	site	oligos_7nt_test_vs_ctrl_m1	R	-52	-42	AAGAAACTAGT	8.6
7:61070404-61070605	site	oligos_7nt_test_vs_ctrl_m1	D	-77	-67	GTGAAACTAAA	8.5
7:89509699-89509900	site	oligos_7nt_test_vs_ctrl_m1	R	-69	-59	AGGAAACTACC	8.5
8:111309947-111310148	site	oligos_7nt_test_vs_ctrl_m1	R	44	54	CGGACACTATA	7.6
8:112013923-112014124	site	oligos_7nt_test_vs_ctrl_m1	R	78	88	TGGAAACTATA	9.3
8:122841790-122841991	site	oligos_7nt_test_vs_ctrl_m1	D	8	18	AAGAAACTAGT	8.6
9:31053329-31053530	site	oligos_7nt_test_vs_ctrl_m1	D	-80	-70	GGGAAACTAAA	8.2
9:83409687-83409888	site	oligos_7nt_test_vs_ctrl_m1	D	-70	-60	CGGACACTATA	7.6
9:118837629-118837830	site	oligos_7nt_test_vs_ctrl_m1	R	46	56	AAGAAACTAGT	8.6
X:15365322-15365523	site	oligos_7nt_test_vs_ctrl_m1	D	34	44	CAGAAACTACA	8.8
X:74261135-74261336	site	oligos_7nt_test_vs_ctrl_m1	D	-32	-22	AAGAAACTAGT	8.6
X:88971143-88971344	site	oligos_7nt_test_vs_ctrl_m1	D	-55	-45	GGGAAACTACA	8.8
X:106992710-106992911	site	oligos_7nt_test_vs_ctrl_m1	R	88	98	GGGAAACTACA	8.8
;
; Matrices
;	matrix	name                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_test_vs_ctrl_m1	11	4	0	-16.000	9.300	25.300	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                      	matches	scored
;	1	oligos_7nt_test_vs_ctrl_m1	77	0
;		TOTAL          	77	0
; Host name	rsat
; Job started	2025-09-18.095849
; Job done	2025-09-18.095849
; Seconds	0.27
;	user	0.27
;	system	0
;	cuser	0.1
;	csystem	0.02
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:110177455-110177656	site	oligos_7nt_test_vs_ctrl_m2	R	-80	-70	GCCTCACAAGC	7.6
1:177450518-177450719	site	oligos_7nt_test_vs_ctrl_m2	R	-59	-49	CACTCACAATG	8.1
1:178328353-178328554	site	oligos_7nt_test_vs_ctrl_m2	D	-15	-5	GACTCACAATT	8.5
1:178332080-178332281	site	oligos_7nt_test_vs_ctrl_m2	D	-90	-80	ACCTCACAATC	8.4
1:191909656-191909857	site	oligos_7nt_test_vs_ctrl_m2	R	-9	1	GACTCACAAAG	8.0
10:49592968-49593169	site	oligos_7nt_test_vs_ctrl_m2	D	-92	-82	GTCTCACAAGA	8.2
10:69019628-69019829	site	oligos_7nt_test_vs_ctrl_m2	D	-92	-82	GGCTCACAACC	8.1
10:99758732-99758933	site	oligos_7nt_test_vs_ctrl_m2	R	-50	-40	CTCTCACAAGA	7.9
10:126324975-126325176	site	oligos_7nt_test_vs_ctrl_m2	R	-92	-82	AGCTCACAAGA	7.6
11:6467663-6467864	site	oligos_7nt_test_vs_ctrl_m2	D	83	93	GTCTCACAATT	8.4
11:23296693-23296894	site	oligos_7nt_test_vs_ctrl_m2	R	4	14	GGCTCACAAAT	7.7
11:30100091-30100292	site	oligos_7nt_test_vs_ctrl_m2	D	2	12	GCCTCACAAAA	7.9
11:65688532-65688733	site	oligos_7nt_test_vs_ctrl_m2	D	-28	-18	AGCTCACAATG	7.6
11:75724927-75725128	site	oligos_7nt_test_vs_ctrl_m2	D	55	65	GGCTCACAACC	8.1
11:80394288-80394489	site	oligos_7nt_test_vs_ctrl_m2	D	84	94	CACTCACAACC	8.5
11:86711426-86711627	site	oligos_7nt_test_vs_ctrl_m2	R	-22	-12	TACTCACAATG	8.7
11:94292298-94292499	site	oligos_7nt_test_vs_ctrl_m2	D	57	67	CGCTCACAACA	9.0
11:101321863-101322064	site	oligos_7nt_test_vs_ctrl_m2	R	-69	-59	GACTCACAAAG	8.0
11:107917321-107917522	site	oligos_7nt_test_vs_ctrl_m2	D	22	32	GGCTCACAACC	8.1
13:23747003-23747204	site	oligos_7nt_test_vs_ctrl_m2	D	80	90	GGCTCACAACA	8.1
13:70006887-70007088	site	oligos_7nt_test_vs_ctrl_m2	D	85	95	CACTCACAATC	8.7
13:104430996-104431197	site	oligos_7nt_test_vs_ctrl_m2	R	-50	-40	TGCTCACAATG	7.6
13:119775964-119776165	site	oligos_7nt_test_vs_ctrl_m2	D	-38	-28	TTCTCACAATG	7.9
14:52097293-52097494	site	oligos_7nt_test_vs_ctrl_m2	R	32	42	CCCTCACAAAC	8.0
14:66967885-66968086	site	oligos_7nt_test_vs_ctrl_m2	R	65	75	GACTCACAAAG	8.0
14:74223619-74223820	site	oligos_7nt_test_vs_ctrl_m2	D	76	86	ATCTCACAACT	8.2
15:48617935-48618136	site	oligos_7nt_test_vs_ctrl_m2	R	12	22	AACTCACAATC	8.7
15:73407648-73407849	site	oligos_7nt_test_vs_ctrl_m2	R	-58	-48	TCCTCACAATA	8.9
15:74081163-74081364	site	oligos_7nt_test_vs_ctrl_m2	R	-32	-22	AGCTCACAACA	8.0
15:93412881-93413082	site	oligos_7nt_test_vs_ctrl_m2	R	-22	-12	GACTCACAAGG	7.7
15:100619461-100619662	site	oligos_7nt_test_vs_ctrl_m2	D	-15	-5	TTCTCACAATG	7.9
16:20654882-20655083	site	oligos_7nt_test_vs_ctrl_m2	D	-57	-47	GGCTCACAATG	7.7
16:23113303-23113504	site	oligos_7nt_test_vs_ctrl_m2	R	66	76	TCCTCACAAGA	7.8
17:78491587-78491788	site	oligos_7nt_test_vs_ctrl_m2	D	4	14	GACTCACAATT	8.5
18:42071288-42071489	site	oligos_7nt_test_vs_ctrl_m2	R	87	97	GGCTCACAACC	8.1
18:85848456-85848657	site	oligos_7nt_test_vs_ctrl_m2	R	52	62	GACTCACAATT	8.5
2:9041229-9041430	site	oligos_7nt_test_vs_ctrl_m2	D	38	48	TTCTCACAAAA	8.1
2:24992711-24992912	site	oligos_7nt_test_vs_ctrl_m2	D	78	88	AACTCACAAGG	7.5
2:25223158-25223359	site	oligos_7nt_test_vs_ctrl_m2	D	23	33	TTCTCACAACG	8.8
2:60270160-60270361	site	oligos_7nt_test_vs_ctrl_m2	D	-9	1	AGCTCACAACC	8.0
2:87393719-87393920	site	oligos_7nt_test_vs_ctrl_m2	D	-36	-26	CTCTCACAACA	8.3
2:90905786-90905987	site	oligos_7nt_test_vs_ctrl_m2	D	47	57	GGCTCACAACC	8.1
2:155421148-155421349	site	oligos_7nt_test_vs_ctrl_m2	R	89	99	GCCTCACAAGC	7.6
3:5415285-5415486	site	oligos_7nt_test_vs_ctrl_m2	D	-100	-90	CTCTCACAAAA	8.1
3:9264662-9264863	site	oligos_7nt_test_vs_ctrl_m2	D	88	98	TGCTCACAAGC	7.5
3:152427792-152427993	site	oligos_7nt_test_vs_ctrl_m2	R	-55	-45	TTCTCACAATC	8.5
4:74303168-74303369	site	oligos_7nt_test_vs_ctrl_m2	D	81	91	ACCTCACAAAT	7.9
4:87841073-87841274	site	oligos_7nt_test_vs_ctrl_m2	R	41	51	GCCTCACAAAT	7.8
4:129839492-129839693	site	oligos_7nt_test_vs_ctrl_m2	D	43	53	AACTCACAACC	8.5
4:141522189-141522390	site	oligos_7nt_test_vs_ctrl_m2	R	-7	3	AGCTCACAACT	7.7
5:7179566-7179767	site	oligos_7nt_test_vs_ctrl_m2	R	51	61	TTCTCACAACG	8.8
5:40372512-40372713	site	oligos_7nt_test_vs_ctrl_m2	D	-76	-66	GACTCACAAAA	8.5
5:90132313-90132514	site	oligos_7nt_test_vs_ctrl_m2	D	39	49	GACTCATAATA	7.6
5:108085485-108085686	site	oligos_7nt_test_vs_ctrl_m2	R	70	80	GGCTCACAACC	8.1
6:31475433-31475634	site	oligos_7nt_test_vs_ctrl_m2	D	82	92	GGCTCACAACC	8.1
6:98173003-98173204	site	oligos_7nt_test_vs_ctrl_m2	D	74	84	CCCTCACAATA	8.8
7:4794350-4794551	site	oligos_7nt_test_vs_ctrl_m2	R	-66	-56	AGCTCACAAAC	7.9
7:67268254-67268455	site	oligos_7nt_test_vs_ctrl_m2	D	11	21	CTCTCACAACC	8.3
7:90444189-90444390	site	oligos_7nt_test_vs_ctrl_m2	D	75	85	GCCTCACAACC	8.1
7:100640717-100640918	site	oligos_7nt_test_vs_ctrl_m2	R	-9	1	ATCTCACAATA	9.2
7:123002201-123002402	site	oligos_7nt_test_vs_ctrl_m2	R	19	29	AACTCACAATT	8.3
8:25640813-25641014	site	oligos_7nt_test_vs_ctrl_m2	D	-91	-81	CGCTCACAAAT	8.7
8:27500775-27500976	site	oligos_7nt_test_vs_ctrl_m2	R	-64	-54	TACTCACAACA	9.2
8:80111162-80111363	site	oligos_7nt_test_vs_ctrl_m2	D	-57	-47	ACCTCACAACC	8.2
9:66372298-66372499	site	oligos_7nt_test_vs_ctrl_m2	R	6	16	AGCTCACAACT	7.7
9:71844372-71844573	site	oligos_7nt_test_vs_ctrl_m2	D	19	29	CTCTCACAATA	9.0
9:78820865-78821066	site	oligos_7nt_test_vs_ctrl_m2	R	-59	-49	AGCTCACAATG	7.6
X:13161330-13161531	site	oligos_7nt_test_vs_ctrl_m2	R	-32	-22	TTCTCACAAAT	8.0
X:103961653-103961854	site	oligos_7nt_test_vs_ctrl_m2	D	-72	-62	GGCTCACAAAA	7.9
X:139714265-139714466	site	oligos_7nt_test_vs_ctrl_m2	R	4	14	TCCTCACAAGC	7.6
X:156105357-156105558	site	oligos_7nt_test_vs_ctrl_m2	D	35	45	GTCTCACAAAA	8.4
;
; Matrices
;	matrix	name                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_test_vs_ctrl_m2	11	4	0	-19.100	9.400	28.500	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                      	matches	scored
;	1	oligos_7nt_test_vs_ctrl_m2	71	0
;		TOTAL          	71	0
; Host name	rsat
; Job started	2025-09-18.095850
; Job done	2025-09-18.095850
; Seconds	0.27
;	user	0.27
;	system	0
;	cuser	0.11
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:52187636-52187837	site	oligos_7nt_test_vs_ctrl_m3	D	-74	-64	CAGACTCTCCA	7.7
1:52187636-52187837	site	oligos_7nt_test_vs_ctrl_m3	D	25	35	GAGACTCTCAT	8.6
1:110177455-110177656	site	oligos_7nt_test_vs_ctrl_m3	D	-31	-21	AGGACTCTCCT	8.2
1:171340925-171341126	site	oligos_7nt_test_vs_ctrl_m3	D	54	64	CAGACTCTCTC	8.3
10:8601218-8601419	site	oligos_7nt_test_vs_ctrl_m3	D	7	17	GGGACTCTCAC	8.6
10:14746811-14747012	site	oligos_7nt_test_vs_ctrl_m3	R	-71	-61	ATGACTCTCAG	8.4
10:36997006-36997207	site	oligos_7nt_test_vs_ctrl_m3	R	80	90	TAGACTCTCCC	8.7
10:50700437-50700638	site	oligos_7nt_test_vs_ctrl_m3	R	72	82	CTGACTCTCAA	7.7
10:59950652-59950853	site	oligos_7nt_test_vs_ctrl_m3	R	-70	-60	TGGACTCTCGC	8.9
10:77652867-77653068	site	oligos_7nt_test_vs_ctrl_m3	D	45	55	AGGACTCTCAA	8.0
10:128047660-128047861	site	oligos_7nt_test_vs_ctrl_m3	R	-64	-54	GTGACTCTCGT	9.5
11:50207459-50207660	site	oligos_7nt_test_vs_ctrl_m3	R	82	92	TTGACTCTCCC	8.1
11:69998373-69998574	site	oligos_7nt_test_vs_ctrl_m3	D	68	78	AGGACTCTCTT	8.4
11:86733616-86733817	site	oligos_7nt_test_vs_ctrl_m3	D	-31	-21	GAGACTCTCCT	8.4
12:8499218-8499419	site	oligos_7nt_test_vs_ctrl_m3	R	38	48	CGGACTCTCTC	9.3
12:72048760-72048961	site	oligos_7nt_test_vs_ctrl_m3	R	63	73	TAGACTCTCTA	9.2
12:96922631-96922832	site	oligos_7nt_test_vs_ctrl_m3	D	52	62	GTGACTCTCGT	9.5
12:108737345-108737546	site	oligos_7nt_test_vs_ctrl_m3	R	-74	-64	AGGACTCTCTG	8.5
13:64996602-64996803	site	oligos_7nt_test_vs_ctrl_m3	D	-70	-60	GCGACTCTCTC	9.4
13:107787706-107787907	site	oligos_7nt_test_vs_ctrl_m3	R	-20	-10	GAGACTCTCTT	8.6
14:52205262-52205463	site	oligos_7nt_test_vs_ctrl_m3	R	80	90	AGGACTCTCTA	8.8
14:52237389-52237590	site	oligos_7nt_test_vs_ctrl_m3	R	23	33	TGGACTCTCTG	8.3
15:8290731-8290932	site	oligos_7nt_test_vs_ctrl_m3	R	-29	-19	CAGACTCTCCT	7.9
15:8351574-8351775	site	oligos_7nt_test_vs_ctrl_m3	R	-30	-20	TGGACTCTCAG	8.1
15:12118094-12118295	site	oligos_7nt_test_vs_ctrl_m3	D	21	31	CTGACTCTCCG	9.0
15:30094979-30095180	site	oligos_7nt_test_vs_ctrl_m3	D	-25	-15	GCGACTCTCTC	9.4
15:66613091-66613292	site	oligos_7nt_test_vs_ctrl_m3	R	-34	-24	AAGACTCTCCA	8.0
16:87555714-87555915	site	oligos_7nt_test_vs_ctrl_m3	R	18	28	GAGACTCTCGG	9.3
17:12967533-12967734	site	oligos_7nt_test_vs_ctrl_m3	R	-1	9	TAGACTCTCCC	8.7
18:6111876-6112077	site	oligos_7nt_test_vs_ctrl_m3	R	-48	-38	CAGACTCTCAA	7.7
18:24014289-24014490	site	oligos_7nt_test_vs_ctrl_m3	D	-38	-28	TGGACTCTCTG	8.3
19:6975312-6975513	site	oligos_7nt_test_vs_ctrl_m3	D	75	85	GCGACTCTACG	7.8
19:11438375-11438576	site	oligos_7nt_test_vs_ctrl_m3	D	-56	-46	AAGACTCTCAG	8.3
19:53988077-53988278	site	oligos_7nt_test_vs_ctrl_m3	D	-13	-3	CTGACTCTCTT	8.1
19:53988077-53988278	site	oligos_7nt_test_vs_ctrl_m3	D	74	84	TAGACTCTCTC	9.0
2:18080702-18080903	site	oligos_7nt_test_vs_ctrl_m3	D	-88	-78	ATGACTCTCAT	8.6
2:26921920-26922121	site	oligos_7nt_test_vs_ctrl_m3	R	68	78	TTGACTCTCGT	9.0
2:45356984-45357185	site	oligos_7nt_test_vs_ctrl_m3	D	-75	-65	TGGACTCTCTA	8.6
2:72970852-72971053	site	oligos_7nt_test_vs_ctrl_m3	R	0	10	GGGACTCTCGG	9.2
2:90909544-90909745	site	oligos_7nt_test_vs_ctrl_m3	D	-12	-2	GGGACTCTCTA	8.9
3:22459990-22460191	site	oligos_7nt_test_vs_ctrl_m3	D	-89	-79	GCGACTCTCTC	9.4
3:101581952-101582153	site	oligos_7nt_test_vs_ctrl_m3	R	73	83	ATGACTCTCCA	8.2
3:104752665-104752866	site	oligos_7nt_test_vs_ctrl_m3	D	16	26	GTGACTCTCTT	8.7
4:48468336-48468537	site	oligos_7nt_test_vs_ctrl_m3	D	81	91	GTGACTCTCCG	9.5
4:95632907-95633108	site	oligos_7nt_test_vs_ctrl_m3	R	-79	-69	AAGACTCTCTC	8.6
4:129839492-129839693	site	oligos_7nt_test_vs_ctrl_m3	D	62	72	GCGACTCTCAA	8.8
5:31204449-31204650	site	oligos_7nt_test_vs_ctrl_m3	R	54	64	GAGACTCTCGC	9.2
5:31243848-31244049	site	oligos_7nt_test_vs_ctrl_m3	R	68	78	TTGACTCTCCC	8.1
5:115272266-115272467	site	oligos_7nt_test_vs_ctrl_m3	D	-98	-88	TAGACTCGCCG	7.8
5:124885913-124886114	site	oligos_7nt_test_vs_ctrl_m3	R	-71	-61	TGGACTCTCTG	8.3
6:35512090-35512291	site	oligos_7nt_test_vs_ctrl_m3	R	-4	6	ATGACTCTCCT	8.4
6:75297539-75297740	site	oligos_7nt_test_vs_ctrl_m3	R	-42	-32	ATGACTCTCAG	8.4
6:126077119-126077320	site	oligos_7nt_test_vs_ctrl_m3	D	-95	-85	CAGACTCTCTG	8.2
7:15288912-15289113	site	oligos_7nt_test_vs_ctrl_m3	D	85	95	GCGACTCGCGG	7.9
7:112093166-112093367	site	oligos_7nt_test_vs_ctrl_m3	D	22	32	TTGACTCTCAC	8.3
7:123170342-123170543	site	oligos_7nt_test_vs_ctrl_m3	R	27	37	TTGACTCTCCA	7.8
7:131570215-131570416	site	oligos_7nt_test_vs_ctrl_m3	D	-99	-89	TAGACTCGCGG	7.5
9:72061081-72061282	site	oligos_7nt_test_vs_ctrl_m3	R	89	99	AGGACTCTCAA	8.0
9:85325034-85325235	site	oligos_7nt_test_vs_ctrl_m3	R	-69	-59	TAGACTCTCTT	8.9
X:152027775-152027976	site	oligos_7nt_test_vs_ctrl_m3	R	30	40	CTGACTCTCTT	8.1
X:164422883-164423084	site	oligos_7nt_test_vs_ctrl_m3	R	-59	-49	ATGACTCTCAG	8.4
X:164422883-164423084	site	oligos_7nt_test_vs_ctrl_m3	D	-29	-19	ACGACTCTCTT	9.4
;
; Matrices
;	matrix	name                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_test_vs_ctrl_m3	11	4	0	-15.400	9.400	24.800	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                      	matches	scored
;	1	oligos_7nt_test_vs_ctrl_m3	62	0
;		TOTAL          	62	0
; Host name	rsat
; Job started	2025-09-18.095851
; Job done	2025-09-18.095851
; Seconds	0.26
;	user	0.26
;	system	0.02
;	cuser	0.11
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:55015556-55015757	site	oligos_7nt_test_vs_ctrl_m4	D	61	71	TAATTCATGCA	8.0
1:55152813-55153014	site	oligos_7nt_test_vs_ctrl_m4	D	56	66	TTATTCATGAG	8.8
1:131935746-131935947	site	oligos_7nt_test_vs_ctrl_m4	R	85	95	TAATTCATGAA	8.6
1:180093957-180094158	site	oligos_7nt_test_vs_ctrl_m4	D	-30	-20	GAATTCATGGA	7.7
10:17723945-17724146	site	oligos_7nt_test_vs_ctrl_m4	R	83	93	GCATTCATGTT	8.4
10:57782302-57782503	site	oligos_7nt_test_vs_ctrl_m4	D	77	87	GGATTCATGTG	7.5
10:61691294-61691495	site	oligos_7nt_test_vs_ctrl_m4	D	-68	-58	GTATTCATGTG	9.1
10:82431448-82431649	site	oligos_7nt_test_vs_ctrl_m4	D	61	71	TCATTCATGGA	8.0
10:92542411-92542612	site	oligos_7nt_test_vs_ctrl_m4	R	58	68	TTATTCATGGT	8.9
10:128047660-128047861	site	oligos_7nt_test_vs_ctrl_m4	D	78	88	GTATTAATGTT	7.6
10:128084264-128084465	site	oligos_7nt_test_vs_ctrl_m4	R	51	61	ACATTCATGAT	8.8
11:20446647-20446848	site	oligos_7nt_test_vs_ctrl_m4	R	30	40	AAATTCATGCC	7.7
11:59212520-59212721	site	oligos_7nt_test_vs_ctrl_m4	D	52	62	GCATTCATGGC	7.8
11:86267032-86267233	site	oligos_7nt_test_vs_ctrl_m4	R	-94	-84	TTATTCATGAA	9.0
11:86711426-86711627	site	oligos_7nt_test_vs_ctrl_m4	R	6	16	GAATTCATGAG	7.8
11:94292298-94292499	site	oligos_7nt_test_vs_ctrl_m4	R	-3	7	GTATTCATGCC	8.8
12:35773186-35773387	site	oligos_7nt_test_vs_ctrl_m4	D	-4	6	GCATTCATGGA	7.8
12:52516456-52516657	site	oligos_7nt_test_vs_ctrl_m4	D	-44	-34	AAATTCATGTC	8.5
13:34074546-34074747	site	oligos_7nt_test_vs_ctrl_m4	D	-91	-81	TCATTCATGTT	8.5
13:64624414-64624615	site	oligos_7nt_test_vs_ctrl_m4	R	61	71	GGATTCATGTG	7.5
14:24070401-24070602	site	oligos_7nt_test_vs_ctrl_m4	R	20	30	AAATTCATGGT	8.0
14:52084144-52084345	site	oligos_7nt_test_vs_ctrl_m4	D	64	74	GAATTCATGGA	7.7
14:56959765-56959966	site	oligos_7nt_test_vs_ctrl_m4	D	-5	5	ATATTTATGAT	7.5
14:61367149-61367350	site	oligos_7nt_test_vs_ctrl_m4	R	-11	-1	ATATTCATGTT	9.6
14:98025102-98025303	site	oligos_7nt_test_vs_ctrl_m4	R	53	63	GCATTCATGTT	8.4
15:25840375-25840576	site	oligos_7nt_test_vs_ctrl_m4	R	-53	-43	GGATTCATGTG	7.5
15:36605720-36605921	site	oligos_7nt_test_vs_ctrl_m4	D	89	99	AAATTCATGGT	8.0
15:58899099-58899300	site	oligos_7nt_test_vs_ctrl_m4	D	47	57	GTATTAATGTC	7.7
15:59211518-59211719	site	oligos_7nt_test_vs_ctrl_m4	D	-77	-67	TAATTCATGAG	8.3
15:66613091-66613292	site	oligos_7nt_test_vs_ctrl_m4	R	-44	-34	AGATTCATGTT	8.0
15:101691305-101691506	site	oligos_7nt_test_vs_ctrl_m4	D	-58	-48	ACATTCATGAG	8.3
15:103241423-103241624	site	oligos_7nt_test_vs_ctrl_m4	R	0	10	GCATTCATGGC	7.8
17:72848725-72848926	site	oligos_7nt_test_vs_ctrl_m4	D	66	76	GGATTCATGAA	7.6
18:10070233-10070434	site	oligos_7nt_test_vs_ctrl_m4	D	45	55	GAATTCATGGC	7.7
18:27598833-27599034	site	oligos_7nt_test_vs_ctrl_m4	R	-80	-70	GCATTCATGGC	7.8
18:35591178-35591379	site	oligos_7nt_test_vs_ctrl_m4	D	3	13	TAATTCATGTA	9.3
18:36288773-36288974	site	oligos_7nt_test_vs_ctrl_m4	D	-50	-40	TAATTCATGCA	8.0
18:37652466-37652667	site	oligos_7nt_test_vs_ctrl_m4	D	-52	-42	ATATTCATGGA	9.1
18:39486078-39486279	site	oligos_7nt_test_vs_ctrl_m4	D	-10	0	GTATTCATGTC	9.5
18:54699050-54699251	site	oligos_7nt_test_vs_ctrl_m4	D	67	77	CCATTCATGCG	7.8
18:64449143-64449344	site	oligos_7nt_test_vs_ctrl_m4	D	-15	-5	GAATTCATGCG	8.3
18:79959278-79959479	site	oligos_7nt_test_vs_ctrl_m4	R	10	20	GCATTCATGGC	7.8
19:40622559-40622760	site	oligos_7nt_test_vs_ctrl_m4	D	-16	-6	GCATTCATGTT	8.4
2:19993021-19993222	site	oligos_7nt_test_vs_ctrl_m4	D	-17	-7	GCATTCATGTT	8.4
2:22589571-22589772	site	oligos_7nt_test_vs_ctrl_m4	D	58	68	ATATTCATGTC	9.7
2:70023480-70023681	site	oligos_7nt_test_vs_ctrl_m4	D	-100	-90	GGATTCATGAA	7.6
2:70023480-70023681	site	oligos_7nt_test_vs_ctrl_m4	D	-53	-43	ATATACATGGT	7.6
2:83986028-83986229	site	oligos_7nt_test_vs_ctrl_m4	D	-44	-34	CTATTCATGAC	8.7
2:115864230-115864431	site	oligos_7nt_test_vs_ctrl_m4	R	-98	-88	ACATTCATGCC	8.1
2:129750027-129750228	site	oligos_7nt_test_vs_ctrl_m4	D	-41	-31	GGATTCATGTG	7.5
2:143150772-143150973	site	oligos_7nt_test_vs_ctrl_m4	D	-76	-66	ATATTCATGTA	10.1
2:155226364-155226565	site	oligos_7nt_test_vs_ctrl_m4	R	83	93	ATATACATGTG	7.7
2:157168814-157169015	site	oligos_7nt_test_vs_ctrl_m4	R	7	17	GTATTCATGCT	8.7
3:5860459-5860660	site	oligos_7nt_test_vs_ctrl_m4	R	-68	-58	CCATTCATGCG	7.8
3:16214853-16215054	site	oligos_7nt_test_vs_ctrl_m4	R	24	34	TAATTCATGGA	8.3
3:51473525-51473726	site	oligos_7nt_test_vs_ctrl_m4	R	3	13	AAATTCATGCT	7.7
3:76042639-76042840	site	oligos_7nt_test_vs_ctrl_m4	R	45	55	TGATTCATGTG	7.5
3:90361374-90361575	site	oligos_7nt_test_vs_ctrl_m4	D	21	31	TCATTCATGTA	9.0
3:90361374-90361575	site	oligos_7nt_test_vs_ctrl_m4	R	24	34	ATATACATGAA	7.7
3:94984369-94984570	site	oligos_7nt_test_vs_ctrl_m4	R	81	91	ATATACATGTT	8.0
3:152186623-152186824	site	oligos_7nt_test_vs_ctrl_m4	R	-18	-8	TTATTCATGAA	9.0
4:51253379-51253580	site	oligos_7nt_test_vs_ctrl_m4	D	89	99	GAATTCATGCG	8.3
4:65376999-65377200	site	oligos_7nt_test_vs_ctrl_m4	R	-88	-78	GCATTCATGCC	7.7
4:132827945-132828146	site	oligos_7nt_test_vs_ctrl_m4	R	14	24	GCATTCATGGG	7.5
5:43286854-43287055	site	oligos_7nt_test_vs_ctrl_m4	D	43	53	TAATTCATGTG	8.5
5:92187897-92188098	site	oligos_7nt_test_vs_ctrl_m4	D	-67	-57	TTATTTATGTA	7.7
5:149660834-149661035	site	oligos_7nt_test_vs_ctrl_m4	R	-68	-58	TCATTCATGGC	8.0
6:9889897-9890098	site	oligos_7nt_test_vs_ctrl_m4	D	-100	-90	AAATTCATGAC	8.4
6:72434114-72434315	site	oligos_7nt_test_vs_ctrl_m4	D	-68	-58	AAATTCATGTC	8.5
6:98061195-98061396	site	oligos_7nt_test_vs_ctrl_m4	D	-37	-27	CAATTCATGTT	7.6
6:99877814-99878015	site	oligos_7nt_test_vs_ctrl_m4	R	-62	-52	CCATTCATGAT	7.8
6:99877814-99878015	site	oligos_7nt_test_vs_ctrl_m4	D	-5	5	GGATTCATGTT	7.8
6:117923852-117924053	site	oligos_7nt_test_vs_ctrl_m4	D	-93	-83	CAATTCATGAT	7.6
6:125114254-125114455	site	oligos_7nt_test_vs_ctrl_m4	R	46	56	TCATTCATGCC	7.9
7:3983871-3984072	site	oligos_7nt_test_vs_ctrl_m4	D	71	81	TTATACATGTT	7.6
7:12086297-12086498	site	oligos_7nt_test_vs_ctrl_m4	D	-82	-72	AAATTCATGAT	8.4
7:39589112-39589313	site	oligos_7nt_test_vs_ctrl_m4	D	-78	-68	GGATTCATGAA	7.6
7:39589112-39589313	site	oligos_7nt_test_vs_ctrl_m4	R	-75	-65	TTATTCATGAA	9.0
7:89509699-89509900	site	oligos_7nt_test_vs_ctrl_m4	D	14	24	CCATTCATGTC	7.9
7:90208138-90208339	site	oligos_7nt_test_vs_ctrl_m4	R	-92	-82	ATATTAATGTT	7.8
7:90444189-90444390	site	oligos_7nt_test_vs_ctrl_m4	R	-55	-45	ACATTCATGCT	8.1
7:97595219-97595420	site	oligos_7nt_test_vs_ctrl_m4	R	-76	-66	GGATTCATGTC	7.9
7:104501277-104501478	site	oligos_7nt_test_vs_ctrl_m4	R	-95	-85	ATATTAATGTT	7.8
7:104501277-104501478	site	oligos_7nt_test_vs_ctrl_m4	D	-49	-39	TCATTCATGTC	8.6
7:121015324-121015525	site	oligos_7nt_test_vs_ctrl_m4	R	24	34	GGATTCATGTG	7.5
8:42247126-42247327	site	oligos_7nt_test_vs_ctrl_m4	R	78	88	TAATTCATGCT	8.1
8:86725088-86725289	site	oligos_7nt_test_vs_ctrl_m4	R	-69	-59	CTATTCATGAG	8.2
8:94405600-94405801	site	oligos_7nt_test_vs_ctrl_m4	R	-94	-84	TCATTCATGTT	8.5
8:123421397-123421598	site	oligos_7nt_test_vs_ctrl_m4	R	71	81	TCATTCATGTT	8.5
9:62060319-62060520	site	oligos_7nt_test_vs_ctrl_m4	D	-33	-23	TTATTCATGAA	9.0
9:64716807-64717008	site	oligos_7nt_test_vs_ctrl_m4	R	-8	2	CTATTCATGTT	8.6
9:75397910-75398111	site	oligos_7nt_test_vs_ctrl_m4	R	84	94	ACATTCATGGC	8.3
9:79771266-79771467	site	oligos_7nt_test_vs_ctrl_m4	D	-45	-35	ATATTTATGAT	7.5
9:96895818-96896019	site	oligos_7nt_test_vs_ctrl_m4	D	-87	-77	GGATTCATGTG	7.5
9:123689840-123690041	site	oligos_7nt_test_vs_ctrl_m4	D	31	41	GCATTCATGGC	7.8
X:15366229-15366430	site	oligos_7nt_test_vs_ctrl_m4	R	53	63	ATATACATGAA	7.7
X:33605031-33605232	site	oligos_7nt_test_vs_ctrl_m4	R	65	75	TAATTCATGAA	8.6
X:47809930-47810131	site	oligos_7nt_test_vs_ctrl_m4	R	-70	-60	GTATTCATGGT	9.1
X:51005059-51005260	site	oligos_7nt_test_vs_ctrl_m4	R	5	15	ACATTCATGTG	8.5
X:101768947-101769148	site	oligos_7nt_test_vs_ctrl_m4	D	-38	-28	CCATTCATGAT	7.8
X:141980390-141980591	site	oligos_7nt_test_vs_ctrl_m4	D	3	13	GCATTCATGGA	7.8
X:142211516-142211717	site	oligos_7nt_test_vs_ctrl_m4	D	30	40	TTATTCATGGA	8.8
X:151919646-151919847	site	oligos_7nt_test_vs_ctrl_m4	R	-15	-5	ACATTCATGTT	8.8
X:154774722-154774923	site	oligos_7nt_test_vs_ctrl_m4	D	-84	-74	TCATTCATGCT	7.8
;
; Matrices
;	matrix	name                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_test_vs_ctrl_m4	11	4	0	-16.600	9.400	26.000	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                      	matches	scored
;	1	oligos_7nt_test_vs_ctrl_m4	104	0
;		TOTAL          	104	0
; Host name	rsat
; Job started	2025-09-18.095852
; Job done	2025-09-18.095852
; Seconds	0.29
;	user	0.29
;	system	0.02
;	cuser	0.07
;	csystem	0.02
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:55760127-55760328	site	dyads_test_vs_ctrl_m1	R	6	34	ATTCTAAATCGTACCCTTATACTCTCAGA	7.6
1:60692064-60692265	site	dyads_test_vs_ctrl_m1	R	29	57	TTCCATTGGTCTACTTGTCTGTCTCTATA	8.1
1:86530380-86530581	site	dyads_test_vs_ctrl_m1	D	10	38	TTCCAGTAACTTTTGTGTATGTACCTAGC	8.6
1:114228420-114228621	site	dyads_test_vs_ctrl_m1	R	69	97	AAACTGCAGCCCAGGCTACTATACCCAGC	9.4
1:133659276-133659477	site	dyads_test_vs_ctrl_m1	D	55	83	TCTCTTTATTCGCTCCTTCTGCCACCATC	8.7
1:149343933-149344134	site	dyads_test_vs_ctrl_m1	R	-64	-36	AATCATTAACTATTATTTTTGTACTTATA	9.4
1:186968934-186969135	site	dyads_test_vs_ctrl_m1	R	49	77	TCTCAGAAGTAGACCCAACTCTTCCTACG	8.3
10:56497479-56497680	site	dyads_test_vs_ctrl_m1	R	-65	-37	CTTCATAGTTCATTGCTTCTGCCTCTACG	9.9
10:59807493-59807694	site	dyads_test_vs_ctrl_m1	R	7	35	TTTTAAAACCTTCTGCTACCATATCCACC	8.6
10:67185981-67186182	site	dyads_test_vs_ctrl_m1	D	-11	17	GTTCTGTGGTCTTGGCTTTTCTTCCTATA	9.0
10:73202476-73202677	site	dyads_test_vs_ctrl_m1	R	-88	-60	CTACCATATTGTCCTCTTCTTCCTCCATA	7.7
10:120923653-120923854	site	dyads_test_vs_ctrl_m1	D	29	57	ATACAGAAAGATTGGTTACTTTATATATT	9.7
10:129665038-129665239	site	dyads_test_vs_ctrl_m1	R	72	100	ACACATCAATCGTATCTTCATCCTCCATT	8.0
11:12142380-12142581	site	dyads_test_vs_ctrl_m1	R	11	39	AAATAGAAGTAGAAGGTACTCTACCCAAC	8.2
11:31934624-31934825	site	dyads_test_vs_ctrl_m1	D	-75	-47	CTTTGGTATAATATATTTACTTCTCCATA	7.8
11:53420947-53421148	site	dyads_test_vs_ctrl_m1	R	-94	-66	AGTTAGTATATAATACTTTGCTCACCATT	7.5
11:75703357-75703558	site	dyads_test_vs_ctrl_m1	R	-84	-56	TCACATTAATCTTCGTAACCTTTACCAGC	10.0
11:77294068-77294269	site	dyads_test_vs_ctrl_m1	R	58	86	CATCAGACTCCTTTTCTTCTTTTTCTTTA	7.8
11:77709708-77709909	site	dyads_test_vs_ctrl_m1	D	53	81	ATATACAAATATATATATATATATACATA	8.1
11:77709708-77709909	site	dyads_test_vs_ctrl_m1	D	55	83	ATACAAATATATATATATATATACATATA	8.4
11:93945469-93945670	site	dyads_test_vs_ctrl_m1	R	-75	-47	CTACAAAACCTTATGTTATTAACCCCTCT	8.4
12:3109857-3110058	site	dyads_test_vs_ctrl_m1	R	-18	10	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
12:3109857-3110058	site	dyads_test_vs_ctrl_m1	R	20	48	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
12:8751261-8751462	site	dyads_test_vs_ctrl_m1	D	5	33	TACAAGCGGCCTTATGTACATTTCCCAAC	8.0
12:10154084-10154285	site	dyads_test_vs_ctrl_m1	R	71	99	GTTCATGTCGCTTTTGTTCTCTTCCCGAA	8.6
12:14929895-14930096	site	dyads_test_vs_ctrl_m1	R	39	67	AATAAATACAACCCGTTACTCTTCCTAGT	8.2
12:17233836-17234037	site	dyads_test_vs_ctrl_m1	R	36	64	ACAGAGAAACATTGGCTACTTTAACCACC	9.5
12:31007094-31007295	site	dyads_test_vs_ctrl_m1	R	4	32	TTTTTTAATTTTAACATACTGTCCCAATA	7.7
12:32850947-32851148	site	dyads_test_vs_ctrl_m1	D	-77	-49	TTTCAGTGATTTACCAGTCTGTTTCCAAC	9.9
12:51409614-51409815	site	dyads_test_vs_ctrl_m1	R	48	76	AAACAAAAAACCAAACTACTGTCCCCATA	11.7
12:53184222-53184423	site	dyads_test_vs_ctrl_m1	D	-40	-12	TATCTGAAACCTTGTAGTCTCTGACCAGC	9.4
12:67037108-67037309	site	dyads_test_vs_ctrl_m1	R	-75	-47	CTACAGTGGATTTGTATACTTTTTTCAAT	8.8
12:99047331-99047532	site	dyads_test_vs_ctrl_m1	R	48	76	TGTGCATACTCTGTAGTATTTTCCACACG	7.5
13:9668663-9668864	site	dyads_test_vs_ctrl_m1	R	-12	16	GTTGAGTACATGAGTTTTCTCTAACCAGT	9.0
13:75771987-75772188	site	dyads_test_vs_ctrl_m1	D	-30	-2	TATAAAAAGAGTAGATATATTTAACCATA	8.0
14:16413597-16413798	site	dyads_test_vs_ctrl_m1	R	-64	-36	CTTCCGTAAACCATAATAACTTAACCGTA	9.2
14:19417204-19417405	site	dyads_test_vs_ctrl_m1	R	-86	-58	CTACAGTGGACATTTCTACATTTTCGACC	7.7
14:19417204-19417405	site	dyads_test_vs_ctrl_m1	R	-48	-20	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
14:19417204-19417405	site	dyads_test_vs_ctrl_m1	R	68	96	TTTCTGTGATTTTCATTTTTCTCGCCATA	10.9
14:56956861-56957062	site	dyads_test_vs_ctrl_m1	D	-34	-6	TTTGAATACCCTATTCTACTTTAACACTA	8.8
14:112132278-112132479	site	dyads_test_vs_ctrl_m1	R	62	90	AAACTGCAGCCCAGGCTACTATACCCAGC	9.4
15:8351574-8351775	site	dyads_test_vs_ctrl_m1	R	-60	-32	CTTCTATAACTCAGGATTCAGACTCCATA	7.7
15:36771668-36771869	site	dyads_test_vs_ctrl_m1	D	-62	-34	ATTCATAAAACTTTTATTCCACTTACATG	9.6
15:37967831-37968032	site	dyads_test_vs_ctrl_m1	D	31	59	TTTCAGAACATTTTACATTTTTCCCCCTC	9.6
15:58900176-58900377	site	dyads_test_vs_ctrl_m1	R	68	96	AACGTGAAAACTTTTATTCTATGTACAAT	8.1
15:73343126-73343327	site	dyads_test_vs_ctrl_m1	D	-23	5	AATGAAAGACCTTTAATACTCGTTCCATT	10.4
15:77079096-77079297	site	dyads_test_vs_ctrl_m1	R	-89	-61	ATTCATTATTTTTTGTATTACTCTCCATG	9.6
16:11220452-11220653	site	dyads_test_vs_ctrl_m1	D	-13	15	TTTCATTATTGTAGGCAATTATGTCCACA	8.6
16:22246480-22246681	site	dyads_test_vs_ctrl_m1	R	-45	-17	ATTTAAAAGGTTTTTCTACTGAATCCAGG	8.0
16:33497994-33498195	site	dyads_test_vs_ctrl_m1	R	28	56	CTACAGAATATTTATTTTTTTTACTAAAA	7.6
16:37697133-37697334	site	dyads_test_vs_ctrl_m1	D	-59	-31	ACCCAGAGCCTTTTCTTTTTCTTCCCAAG	8.7
16:38245133-38245334	site	dyads_test_vs_ctrl_m1	D	-83	-55	AAACAAAATTTATTATTATTATATATATA	8.7
16:54120008-54120209	site	dyads_test_vs_ctrl_m1	D	-21	7	AATCAGAACCCTAGTGTTTCTTAACTACG	9.7
16:75561405-75561606	site	dyads_test_vs_ctrl_m1	D	63	91	TTATAGAATTTCTCTTTTCTAGTTCTATA	7.8
16:84647608-84647809	site	dyads_test_vs_ctrl_m1	R	-49	-21	CCCCAGTACGTCTTTGCTCTCTTCCCAAC	9.7
16:91034115-91034316	site	dyads_test_vs_ctrl_m1	D	-41	-13	CCCCAGAAGACCCTTCTAATCTCTCAATA	7.7
16:94242118-94242319	site	dyads_test_vs_ctrl_m1	D	53	81	TTTTAAAACCTTCTGCTACCATATCCACC	8.6
17:3197871-3198072	site	dyads_test_vs_ctrl_m1	D	-31	-3	ATTCAAAACACTTGGGTTCCCCCTCCTCA	7.5
17:23344270-23344471	site	dyads_test_vs_ctrl_m1	D	71	99	TTTCATAAACCAATGGTATCTTATCAAAA	7.9
17:53354579-53354780	site	dyads_test_vs_ctrl_m1	R	-76	-48	CTTCAGATGTTCTTCATACATTTTACAAA	7.6
17:79934084-79934285	site	dyads_test_vs_ctrl_m1	R	-78	-50	AGTCTGTCGTCCTCATTTATGATCCCATA	7.9
17:91220275-91220476	site	dyads_test_vs_ctrl_m1	R	-6	22	CCTCTCTGCTCTATCTATCTATTTCCAGT	8.3
17:91220275-91220476	site	dyads_test_vs_ctrl_m1	R	54	82	CCTCTCTGCTCTATCTATCTATTTCCAGT	8.3
18:15831219-15831420	site	dyads_test_vs_ctrl_m1	D	7	35	TTTCCTTGTTATTACTTTCTCTCCACACA	9.0
18:34909808-34910009	site	dyads_test_vs_ctrl_m1	D	-63	-35	GCACAGCAGTCTCGGCTACTTTCCGAACA	8.2
18:35581883-35582084	site	dyads_test_vs_ctrl_m1	R	58	86	ATTAAGATATAATTCTTTATTTTCCCATA	10.0
18:36667482-36667683	site	dyads_test_vs_ctrl_m1	D	-37	-9	TTTCTGCAATTAATCTTTTTACTCCCACC	8.4
18:36667482-36667683	site	dyads_test_vs_ctrl_m1	D	-34	-6	CTGCAATTAATCTTTTTACTCCCACCATC	7.6
18:43477184-43477385	site	dyads_test_vs_ctrl_m1	D	13	41	ATTCCATAAACGGTATTATTAACACCAAA	8.5
18:61589395-61589596	site	dyads_test_vs_ctrl_m1	D	-4	24	TTTCAGTGCTTTTATTTACTATGCACTTA	9.7
19:4801596-4801797	site	dyads_test_vs_ctrl_m1	R	33	61	TATCAGAGTCGCAGCTTTCGTTCCGCCGC	8.3
19:21281394-21281595	site	dyads_test_vs_ctrl_m1	D	-41	-13	CTTCAGTTCTTAATGTAACTGTACCCTTC	7.6
19:29809764-29809965	site	dyads_test_vs_ctrl_m1	D	-86	-58	TTTCATTAATTTTTCCTTCTGCGATTATA	8.7
2:5961449-5961650	site	dyads_test_vs_ctrl_m1	R	-14	14	TCTCCGCAGCACTTTTTACTTTCCTCGGT	8.0
2:24593420-24593621	site	dyads_test_vs_ctrl_m1	R	-36	-8	GCTTAGAAATGTACTTTTCTGTAGACATG	8.0
2:36389246-36389447	site	dyads_test_vs_ctrl_m1	R	15	43	ACACATCAATCGTATCTTCATCCTCCATT	8.0
2:53145578-53145779	site	dyads_test_vs_ctrl_m1	D	18	46	CTTCAAAAGTAGTGTTTACTTCAACTACA	7.6
2:85041039-85041240	site	dyads_test_vs_ctrl_m1	R	-35	-7	CCTCAAAGCGCTTTTCTACTTCTTCCCTA	9.6
2:98662218-98662419	site	dyads_test_vs_ctrl_m1	D	-3	25	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
2:98666864-98667065	site	dyads_test_vs_ctrl_m1	R	-72	-44	TTTCCGTGATTTTCAGGTTTCTCGCCATA	9.4
2:98666864-98667065	site	dyads_test_vs_ctrl_m1	R	8	36	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
2:98666864-98667065	site	dyads_test_vs_ctrl_m1	R	46	74	TTTCTTTGATTTTCAGTTTTCTTGCCATA	7.7
2:103766550-103766751	site	dyads_test_vs_ctrl_m1	D	-47	-19	AATAAAAATAGTTTCCTTCCATATCCAGG	8.5
2:121437724-121437925	site	dyads_test_vs_ctrl_m1	R	-67	-39	ATTCAGAGTATATCCATTCTGTCCTCTCT	8.0
2:131322086-131322287	site	dyads_test_vs_ctrl_m1	D	32	60	AGCCAATAATACAACCTTCTATCCGCATA	10.9
2:153317439-153317640	site	dyads_test_vs_ctrl_m1	R	-44	-16	CGCCAGTAATCATCCTTATCATCCCCGTC	9.4
2:174346330-174346531	site	dyads_test_vs_ctrl_m1	D	56	84	ACACCGCAACCTTTCCTTTTTCCCCCAGT	9.2
3:37714961-37715162	site	dyads_test_vs_ctrl_m1	R	40	68	ACAGAGAAACATTGGCTACTTTAACCACC	9.5
3:95338458-95338659	site	dyads_test_vs_ctrl_m1	D	58	86	TCTCAAAAAGGTAGCGCTCTATCTCCTGC	8.0
3:99500831-99501032	site	dyads_test_vs_ctrl_m1	R	-26	2	ATTCATCACCCCCTTTATCTATCAGCATG	7.7
3:103744046-103744247	site	dyads_test_vs_ctrl_m1	R	25	53	TTCCATTGCTCATCTGTTCTCCCCCCAGG	7.8
3:112478615-112478816	site	dyads_test_vs_ctrl_m1	R	45	73	CTTCAGAGCATCTTCTTTCCTACTTCAGA	7.6
3:116631307-116631508	site	dyads_test_vs_ctrl_m1	R	-49	-21	TCTCTAAAGTGTATATTTTTGTGTCCAGT	9.3
3:135231563-135231764	site	dyads_test_vs_ctrl_m1	R	1	29	TTCTAGTGACTCCGGGTTCTGTTCCCAAC	8.3
3:152232543-152232744	site	dyads_test_vs_ctrl_m1	R	-93	-65	TATCAGTAGTGATAGTTATTTTGTACATT	10.1
4:44123859-44124060	site	dyads_test_vs_ctrl_m1	D	58	86	CTCCAGTAACTTTTGTATATGTACCTAGC	9.4
4:73309982-73310183	site	dyads_test_vs_ctrl_m1	R	13	41	ATTGAGAAGAGTGTTGTTCAGTTTCCACG	7.7
4:74228178-74228379	site	dyads_test_vs_ctrl_m1	D	-57	-29	ACCCATACTTCTGGCCTTCTATCCCCACA	9.1
4:82291556-82291757	site	dyads_test_vs_ctrl_m1	D	11	39	AATCAGTGGTCCATGTTATTCCCCCCAGT	11.7
4:82294688-82294889	site	dyads_test_vs_ctrl_m1	D	72	100	AATCTGTGTACTTACCTATAATAACCAAT	8.9
4:95632907-95633108	site	dyads_test_vs_ctrl_m1	D	-32	-4	TATTATTATTATTATTATTATTTACCATT	8.0
4:95632907-95633108	site	dyads_test_vs_ctrl_m1	D	-26	2	TATTATTATTATTATTTACCATTTCTACT	8.8
4:111807234-111807435	site	dyads_test_vs_ctrl_m1	D	21	49	TTTTAAAACCTTCTGCTACCATATCCACC	8.6
4:119137131-119137332	site	dyads_test_vs_ctrl_m1	R	-56	-28	TATATAAATATCTTCCATCTATACACAGC	7.9
4:123350733-123350934	site	dyads_test_vs_ctrl_m1	D	-68	-40	CTTCATAACACAATTCTTCTTTTACAATT	10.3
4:132148513-132148714	site	dyads_test_vs_ctrl_m1	D	-88	-60	TCTCAACGAAGTCGGCTAATTTTGCCATT	7.9
5:20987139-20987340	site	dyads_test_vs_ctrl_m1	D	-80	-52	TATCATAAAAGTATTACTATATTAACAGG	8.1
5:22486759-22486960	site	dyads_test_vs_ctrl_m1	R	-72	-44	TGCCAGCAGCCCTTGTTTATTTGCCCAGC	8.5
5:22693550-22693751	site	dyads_test_vs_ctrl_m1	D	32	60	GATCAAAATTCTTCTTTACAATTTCTAAT	8.4
5:33076171-33076372	site	dyads_test_vs_ctrl_m1	R	-88	-60	TCACCGTATTGTTTTTTGCTTTATACACA	8.0
5:69461527-69461728	site	dyads_test_vs_ctrl_m1	R	26	54	AAACATCTATCTTCTTGACTTTCCCCATT	7.6
5:89690127-89690328	site	dyads_test_vs_ctrl_m1	D	34	62	ATTCTGTAACCTGATTTAATGTCTTCAAA	7.5
5:92187897-92188098	site	dyads_test_vs_ctrl_m1	R	-62	-34	TATTAGTTGCTTTAGTTTCTCTCTACATA	9.6
5:110118480-110118681	site	dyads_test_vs_ctrl_m1	D	65	93	CCTTATAGTCCATTGCTTCTGCCTCTACG	7.6
6:27230894-27231095	site	dyads_test_vs_ctrl_m1	R	-6	22	CTTCAGAACTTATGTTTATTTTTGCCATA	11.5
6:27230894-27231095	site	dyads_test_vs_ctrl_m1	D	14	42	GTTCTGAAGCTGTTACTTCTCCCTACAGC	8.0
6:27230894-27231095	site	dyads_test_vs_ctrl_m1	D	55	83	AATCCGTAATTTATTGGACCTTGTCCAAC	8.9
6:31475433-31475634	site	dyads_test_vs_ctrl_m1	D	42	70	TTCCAGAGATCCTGAGTTCAATTCCCAGC	9.3
6:44792892-44793093	site	dyads_test_vs_ctrl_m1	R	-21	7	CGTCAGGACCGCTACGGACCTCCACCAGA	8.3
6:49252886-49253087	site	dyads_test_vs_ctrl_m1	D	-92	-64	TTTCATACTTCGTGTATTCTTCCCCAATT	8.4
6:72433132-72433333	site	dyads_test_vs_ctrl_m1	D	-75	-47	GGTGATGGCTTCTCTGTACTTACGCCATA	7.6
6:72434114-72434315	site	dyads_test_vs_ctrl_m1	R	54	82	ATTGAAAGTGTTAGCCTTTTTTCCCCAGA	8.4
6:88578208-88578409	site	dyads_test_vs_ctrl_m1	R	16	44	CTCCATAAAACATTCTTACTATTTCCTTC	9.7
6:94501617-94501818	site	dyads_test_vs_ctrl_m1	D	-49	-21	TTTCATTTACTGTTATTTACTTCTCCAAA	7.7
6:127282170-127282371	site	dyads_test_vs_ctrl_m1	D	-5	23	TGTCTGTGTCTTTCATTTTTCTTGCCATC	7.7
6:145266549-145266750	site	dyads_test_vs_ctrl_m1	D	-67	-39	GTTCTGAACTATAAGCTTATTACTCCAGC	9.3
6:145932827-145933028	site	dyads_test_vs_ctrl_m1	D	23	51	CGTCAGGACCGCTACGGACCTCCACCAGA	8.3
7:7062290-7062491	site	dyads_test_vs_ctrl_m1	D	-76	-48	TCTCTGTATACTATGAATGTCTTCACACA	7.5
7:16562466-16562667	site	dyads_test_vs_ctrl_m1	R	-77	-49	TTTGTGAAGTGCAGGATATTATCCCCATC	8.4
7:29799283-29799484	site	dyads_test_vs_ctrl_m1	D	6	34	ATTCTGTAACCTGATTTAATGTCTTCAAA	7.5
7:84615563-84615764	site	dyads_test_vs_ctrl_m1	D	9	37	AACCAAAAATCTATTCTTCTGATGACATG	7.7
7:90208138-90208339	site	dyads_test_vs_ctrl_m1	D	-45	-17	TCACAGTATGTTTGATTTTTATCCACAAG	8.9
7:123194182-123194383	site	dyads_test_vs_ctrl_m1	D	-95	-67	GATCAGTAACTATGCATACTGTAACCAAG	11.8
8:3583767-3583968	site	dyads_test_vs_ctrl_m1	D	-28	0	ACAGAGAAACATTGGCTACTTTAACCACC	9.5
8:4040161-4040362	site	dyads_test_vs_ctrl_m1	D	45	73	TGTCAAAAACAGTTGGTACATATTCCAAT	7.7
8:20986996-20987197	site	dyads_test_vs_ctrl_m1	R	-10	18	CTACACAACTCCTTCTTACTTTCCCCATG	11.9
8:25640813-25641014	site	dyads_test_vs_ctrl_m1	D	18	46	AAACTTTAGCCCTACTGACTATTACCATT	7.7
8:34111497-34111698	site	dyads_test_vs_ctrl_m1	D	-18	10	CTTCAGATGTTCTTCATACATTTTACAAA	7.6
8:41658337-41658538	site	dyads_test_vs_ctrl_m1	D	-2	26	CTTCATAGACTCATTGTACTCTATCTTTT	8.2
8:78486064-78486265	site	dyads_test_vs_ctrl_m1	R	35	63	GTTCCGAACTATAAGCTTATTACTCCAGC	10.2
8:112013923-112014124	site	dyads_test_vs_ctrl_m1	D	-73	-45	TTTTAAAACCTTCTGCTACCATATCCACC	8.6
9:3000460-3000661	site	dyads_test_vs_ctrl_m1	D	-68	-40	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
9:3000460-3000661	site	dyads_test_vs_ctrl_m1	D	-30	-2	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
9:3000460-3000661	site	dyads_test_vs_ctrl_m1	D	50	78	TTTCCGTGATTTTCAGTTTTCTCGACATA	10.0
9:3006722-3006923	site	dyads_test_vs_ctrl_m1	D	-15	13	TTTCCGTGATTTTCAGTTTTCTCGCCATA	11.7
9:3008437-3008638	site	dyads_test_vs_ctrl_m1	D	-30	-2	TTTCCGTGATTTTCAGTTTTCTTGCCATA	9.9
9:3009928-3010129	site	dyads_test_vs_ctrl_m1	D	21	49	TTTCCGTGATTTTCAGTTTTCTCGCCATA	11.7
9:3014038-3014239	site	dyads_test_vs_ctrl_m1	D	-53	-25	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
9:3014038-3014239	site	dyads_test_vs_ctrl_m1	D	-15	13	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
9:3014038-3014239	site	dyads_test_vs_ctrl_m1	D	65	93	TTTCAGTGATTTTCAGTTTTCTCGCCATA	12.7
9:3015300-3015501	site	dyads_test_vs_ctrl_m1	D	-85	-57	TTTCCTTGATTTTCAGTTTTCTTGCCATA	7.6
9:3015300-3015501	site	dyads_test_vs_ctrl_m1	D	31	59	TTTCCATGATTTTCAGTTTTCTCGCCATA	9.7
9:3017931-3018132	site	dyads_test_vs_ctrl_m1	D	-85	-57	TTTCCGTGATTTTCAGTTTTCTTGCCATA	9.9
9:3017931-3018132	site	dyads_test_vs_ctrl_m1	D	31	59	TTTCCATGATTTTCAGTTTTCTCGCCATA	9.7
9:3020812-3021013	site	dyads_test_vs_ctrl_m1	D	-46	-18	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
9:3020812-3021013	site	dyads_test_vs_ctrl_m1	D	-8	20	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
9:3020812-3021013	site	dyads_test_vs_ctrl_m1	D	72	100	TTTCAGTGATTTTCAGTTTTCTCGCCATA	12.7
9:3022432-3022633	site	dyads_test_vs_ctrl_m1	D	-87	-59	TTTCAATGATTTTCATTTTTCTTGCCATA	10.0
9:3022432-3022633	site	dyads_test_vs_ctrl_m1	D	31	59	TTTCCGTGATTTTCAGTTTTCTTGCCATA	9.9
9:3024368-3024569	site	dyads_test_vs_ctrl_m1	D	-92	-64	TTTCCGTGATTTTCAGTTTCCTCGCCATA	9.9
9:3024368-3024569	site	dyads_test_vs_ctrl_m1	D	24	52	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
9:3024368-3024569	site	dyads_test_vs_ctrl_m1	D	62	90	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
9:3026320-3026521	site	dyads_test_vs_ctrl_m1	D	-58	-30	TTTCCTTGATTTTCAGTTTTCTTGCCATA	7.6
9:3026320-3026521	site	dyads_test_vs_ctrl_m1	D	-20	8	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
9:3026320-3026521	site	dyads_test_vs_ctrl_m1	D	60	88	TTTCAGTGATTTTCAGTTTCCTTGCCATA	9.1
9:3028738-3028939	site	dyads_test_vs_ctrl_m1	D	-17	11	TTTCCGTGATTTTCAGTTTTCTTGCCATA	9.9
9:3035002-3035203	site	dyads_test_vs_ctrl_m1	D	-25	3	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
9:3035002-3035203	site	dyads_test_vs_ctrl_m1	D	13	41	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
9:3037313-3037514	site	dyads_test_vs_ctrl_m1	D	-58	-30	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
9:3037313-3037514	site	dyads_test_vs_ctrl_m1	D	-20	8	CTACAGTGGACATTTCTAAATTTTCCACC	7.6
9:35305341-35305542	site	dyads_test_vs_ctrl_m1	R	-87	-59	TTTCCATGATTTTCAGTTTTCTTGCCATA	7.9
9:35305341-35305542	site	dyads_test_vs_ctrl_m1	R	29	57	TTTCCGTGATTTTCAGTTTTCTCCCCATA	11.8
9:70573689-70573890	site	dyads_test_vs_ctrl_m1	R	-56	-28	TCTCATAATCCTTGGCTTCCTTCTCCGGG	9.8
9:85325034-85325235	site	dyads_test_vs_ctrl_m1	D	53	81	GGTCAGAATCATTGCACACTTTAACCATT	8.7
9:88449808-88450009	site	dyads_test_vs_ctrl_m1	R	-82	-54	GTTCAAAAACTATCTGTACTATCTGTACT	9.2
MT:5585-5786	site	dyads_test_vs_ctrl_m1	D	63	91	CATCAGTAGACCTAACAATTTTCTCCCTT	8.1
X:5265901-5266102	site	dyads_test_vs_ctrl_m1	R	-10	18	ATTGAGTAGACAGTTGTTCAATTTCCATG	7.6
X:23800666-23800867	site	dyads_test_vs_ctrl_m1	R	54	82	ATACTATATGGTACCTTATTTTCTCCAGG	8.8
X:33363028-33363229	site	dyads_test_vs_ctrl_m1	D	46	74	ACTCAAAATCATTGCCATCTACTCCTATA	8.4
X:33581522-33581723	site	dyads_test_vs_ctrl_m1	R	47	75	TTACAGAATTGGAAAATATTTTCACCAAC	7.7
X:48010296-48010497	site	dyads_test_vs_ctrl_m1	R	16	44	TCTTCGTAGTTTACCTGACCATCCCCATC	7.7
X:61785809-61786010	site	dyads_test_vs_ctrl_m1	R	-52	-24	ACTCAGTAGTCCATATTGCTATCTCATCA	9.4
X:105278704-105278905	site	dyads_test_vs_ctrl_m1	D	-99	-71	TGTGCATACTCTGTAGTATTTTCCACACG	7.5
X:114981201-114981402	site	dyads_test_vs_ctrl_m1	R	70	98	AAACTAAAATCTACCTTTCTCGCTCCCCG	7.9
;
; Matrices
;	matrix	name                 	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	dyads_test_vs_ctrl_m1	29	4	0	-29.100	18.900	48.000	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                 	matches	scored
;	1	dyads_test_vs_ctrl_m1	184	0
;		TOTAL          	184	0
; Host name	rsat
; Job started	2025-09-18.095853
; Job done	2025-09-18.095853
; Seconds	0.25
;	user	0.25
;	system	0.03
;	cuser	0.08
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:6247971-6248172	site	dyads_test_vs_ctrl_m2	D	-49	-24	TTTGCAGTTTGTTAGAAACTAAAAAT	8.4
1:8816140-8816341	site	dyads_test_vs_ctrl_m2	R	-22	3	GATTTTGAAAACTAATAACTTAAAAC	7.7
1:9746119-9746320	site	dyads_test_vs_ctrl_m2	R	-60	-35	AATCCGGACGATTACACTCCTGTAAA	8.2
1:58646716-58646917	site	dyads_test_vs_ctrl_m2	R	-43	-18	GGTCCAGTACTTTTTCTACCACAAAT	9.2
1:63165051-63165252	site	dyads_test_vs_ctrl_m2	D	-27	-2	TTTACAGTTAACATAAATTTTACATT	9.4
1:108460137-108460338	site	dyads_test_vs_ctrl_m2	R	-53	-28	TTTCCAAAAAATGTAAGATTTAAAGG	8.6
1:161818417-161818618	site	dyads_test_vs_ctrl_m2	D	-13	12	ACTTTAGATCGCCTTCGTTTTAAAGC	7.8
1:162671906-162672107	site	dyads_test_vs_ctrl_m2	D	7	32	TATATATATGTATATATATTTATATT	8.8
1:162671906-162672107	site	dyads_test_vs_ctrl_m2	R	7	32	AATATAAATATATATACATATATATA	8.9
1:162671906-162672107	site	dyads_test_vs_ctrl_m2	D	13	38	TATGTATATATATTTATATTTATATA	8.8
1:162671906-162672107	site	dyads_test_vs_ctrl_m2	R	13	38	TATATAAATATAAATATATATACATA	7.7
10:20325356-20325557	site	dyads_test_vs_ctrl_m2	R	38	63	TATGCAGTCTCTTTCAGTTTATAATT	7.6
10:39822406-39822607	site	dyads_test_vs_ctrl_m2	R	-70	-45	CCTCTAAATCTATTAATAATAATATA	7.8
10:40301972-40302173	site	dyads_test_vs_ctrl_m2	D	-72	-47	TTTTATATTAACTTTTTTTTAAAAAA	8.5
10:69019628-69019829	site	dyads_test_vs_ctrl_m2	D	-36	-11	GCTACAGTGTACTTAGATATAATAAT	8.5
10:96619324-96619525	site	dyads_test_vs_ctrl_m2	R	-42	-17	AAACCAGACCTCCACTTTCTAAAAAT	7.9
10:108278716-108278917	site	dyads_test_vs_ctrl_m2	D	-83	-58	ATTCGAATAAATTGTACATTTAAAGC	8.8
10:108278716-108278917	site	dyads_test_vs_ctrl_m2	R	-39	-14	AATATAGTATACAATACACTCAATAA	8.2
10:120923653-120923854	site	dyads_test_vs_ctrl_m2	D	52	77	TATATTATATATATATATTTTAACAC	7.7
11:3661704-3661905	site	dyads_test_vs_ctrl_m2	D	-91	-66	TTTCCTATAGCTGAATAATTCAAAAT	8.1
11:23489473-23489674	site	dyads_test_vs_ctrl_m2	R	17	42	ATACAAGTAAACTTAATTTTGATAAT	7.9
11:35776195-35776396	site	dyads_test_vs_ctrl_m2	D	-97	-72	ATTCGGAAATACTTGACTTCTAATGT	7.8
11:51600873-51601074	site	dyads_test_vs_ctrl_m2	D	-17	8	CTTACAATACATTAGATTCCCAAAAG	9.3
11:75765378-75765579	site	dyads_test_vs_ctrl_m2	D	47	72	CATGGAATTAACATTAAACTTAAATA	7.7
11:77542455-77542656	site	dyads_test_vs_ctrl_m2	D	60	85	TATCTTGGATAGTTTAGATTTAAATG	7.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m2	D	54	79	TATACAAATATATATATATATATACA	11.0
11:77709708-77709909	site	dyads_test_vs_ctrl_m2	D	62	87	TATATATATATATATACATATATATA	7.8
11:77709708-77709909	site	dyads_test_vs_ctrl_m2	R	62	87	TATATATATGTATATATATATATATA	7.7
11:77709708-77709909	site	dyads_test_vs_ctrl_m2	D	64	89	TATATATATATATACATATATATATA	7.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m2	R	64	89	TATATATATATGTATATATATATATA	7.8
11:78272016-78272217	site	dyads_test_vs_ctrl_m2	R	5	30	ATTTCAATGTTTTTGCGTTCCAAAGA	7.8
11:88083427-88083628	site	dyads_test_vs_ctrl_m2	R	44	69	GTTCCTAAGCTTTTTATATACAAAAG	8.0
11:93945469-93945670	site	dyads_test_vs_ctrl_m2	R	-21	4	ATTCCATACATTTTTACACTAAAAAG	8.7
11:98185572-98185773	site	dyads_test_vs_ctrl_m2	R	-69	-44	TCTCCAGTTCTCCTTGGTCTGTAACA	7.8
12:24493230-24493431	site	dyads_test_vs_ctrl_m2	D	51	76	TTTTCAATATCATTAGCTTTAAAAGA	8.9
12:31007094-31007295	site	dyads_test_vs_ctrl_m2	D	-100	-75	AGTGCAGTAAACGTAGATTTAAAGCA	7.6
12:54645957-54646158	site	dyads_test_vs_ctrl_m2	D	-4	21	CAACTAATGACCTTAGGTTTTAAAAA	7.6
12:55095822-55096023	site	dyads_test_vs_ctrl_m2	D	12	37	AGTCATGTGGAATATATATTTATATA	8.9
12:65043759-65043960	site	dyads_test_vs_ctrl_m2	D	42	67	ATTCCAGTAATTAGTATTTCTAAGGT	7.9
12:67037108-67037309	site	dyads_test_vs_ctrl_m2	R	-53	-28	ATTAAAAATATTTACGTTTCTACAGT	7.5
12:80108385-80108586	site	dyads_test_vs_ctrl_m2	R	-62	-37	TATCAAAACGTATTTATTGCCAAACT	7.6
12:108815790-108815991	site	dyads_test_vs_ctrl_m2	R	-86	-61	CATCTTATTAAAGTATTTTTTAAATT	7.9
13:15119277-15119478	site	dyads_test_vs_ctrl_m2	R	-30	-5	GATTTTGAAAACTAATAACTTAAAAC	7.7
13:17882287-17882488	site	dyads_test_vs_ctrl_m2	R	-70	-45	CATACTAATAAATATAATTTATAAGC	9.1
13:49494187-49494388	site	dyads_test_vs_ctrl_m2	R	-73	-48	ATTCCATAAGTCTAAGAATTTAAATC	9.4
13:69655081-69655282	site	dyads_test_vs_ctrl_m2	D	-17	8	ATTACGATTTTGAATAGTTTGAAATA	8.7
14:13903319-13903520	site	dyads_test_vs_ctrl_m2	D	23	48	AGTCCTAGTTTATTTTTATTAAAACA	9.6
14:31700030-31700231	site	dyads_test_vs_ctrl_m2	R	-87	-62	ATTCCTGTATATTTTAGAGTATAATA	8.3
14:47736218-47736419	site	dyads_test_vs_ctrl_m2	R	-19	6	TATTCAAACAGTTTTATTATAAAACT	7.7
14:47736218-47736419	site	dyads_test_vs_ctrl_m2	R	-3	22	AATGTAAAGGTCTAATTATTCAAACA	8.5
14:56927397-56927598	site	dyads_test_vs_ctrl_m2	R	65	90	CATAAAGATATCTAAAGACTAAAATA	10.2
14:66967885-66968086	site	dyads_test_vs_ctrl_m2	R	-45	-20	TGTTCAATGCTGATATCTTCGAAAAT	7.6
14:73796932-73797133	site	dyads_test_vs_ctrl_m2	D	-14	11	TCTCCAGTTCTCCTTGGTCTGTAACA	7.8
14:73955269-73955470	site	dyads_test_vs_ctrl_m2	D	70	95	GGTCCAGTACTTTTTCTACCACAAAT	9.2
14:122158883-122159084	site	dyads_test_vs_ctrl_m2	R	-33	-8	TTACAAATGCACATAATATTTAAATC	8.0
15:8358915-8359116	site	dyads_test_vs_ctrl_m2	D	-77	-52	TGTCCTGGATACTGCACATTAAAAGG	7.5
15:35814959-35815160	site	dyads_test_vs_ctrl_m2	D	1	26	TATCCAGACTTGTATAAATCAGTAAT	8.2
15:36595862-36596063	site	dyads_test_vs_ctrl_m2	R	-63	-38	AGTCCTAGATTACTTGATTTAAAACA	7.6
15:50776550-50776751	site	dyads_test_vs_ctrl_m2	R	-78	-53	AGTCCGGAATATCAAACACCATAAGT	8.2
15:63931176-63931377	site	dyads_test_vs_ctrl_m2	D	-1	24	AATATTAAATATTAGTTTTCAAAAAA	7.6
15:83405149-83405350	site	dyads_test_vs_ctrl_m2	D	-86	-61	TATTTAATACAGTATCTATTCTAAAA	7.7
15:87473797-87473998	site	dyads_test_vs_ctrl_m2	R	-65	-40	GATCCAATTATCTAATCTCTAATTCA	8.5
16:23110746-23110947	site	dyads_test_vs_ctrl_m2	D	70	95	GATTCGGTGCAATAAGTATTTAGACC	7.8
16:38245133-38245334	site	dyads_test_vs_ctrl_m2	R	71	96	TCCACAAAAAAGTTTATATTTAAAAT	7.8
16:54120008-54120209	site	dyads_test_vs_ctrl_m2	R	-82	-57	CCTCCAGTCTATATATTTTTTTAATC	8.9
17:21284007-21284208	site	dyads_test_vs_ctrl_m2	D	-2	23	GATTTTGAAAACTAATAACTTAAAAC	7.7
17:83425037-83425238	site	dyads_test_vs_ctrl_m2	R	-38	-13	ATTAATAAAGAATTAATTTTTAAAAA	7.6
18:36290118-36290319	site	dyads_test_vs_ctrl_m2	R	-41	-16	TTTACGGTCACCTCATATTTAACATT	8.3
18:42071288-42071489	site	dyads_test_vs_ctrl_m2	D	-61	-36	TGTCCTGTTCTTTTATTATTATTATT	8.1
18:43477184-43477385	site	dyads_test_vs_ctrl_m2	D	19	44	TAAACGGTATTATTAACACCAAAAGT	9.0
18:79856329-79856530	site	dyads_test_vs_ctrl_m2	R	-26	-1	TGTCTAATTCTTTATTAATTTAAAAT	10.3
18:79856329-79856530	site	dyads_test_vs_ctrl_m2	R	56	81	GATGTAATTATAATTTGATTAAAATA	7.9
19:21280422-21280623	site	dyads_test_vs_ctrl_m2	D	33	58	AATCCAGAGAATATAAAATTACTACA	7.6
19:40560570-40560771	site	dyads_test_vs_ctrl_m2	R	-79	-54	TATCTGGAGAAGTACCGTCCGAAAAT	10.0
2:22554307-22554508	site	dyads_test_vs_ctrl_m2	R	-45	-20	GCCACAGTTATGTTTATATCTAAACC	8.2
2:24593420-24593621	site	dyads_test_vs_ctrl_m2	D	40	65	AATTCAGTATCAATAGATTCCAAATC	7.6
2:39197180-39197381	site	dyads_test_vs_ctrl_m2	D	-82	-57	AATTTAGATAATTTAAAATTAAAAAA	9.0
2:78920155-78920356	site	dyads_test_vs_ctrl_m2	D	-17	8	GCTGTAGATTAGTTATGTTTAAAATG	7.8
2:109724142-109724343	site	dyads_test_vs_ctrl_m2	R	-50	-25	TACCCTGTTATGTATATATACAAATA	9.1
2:122011897-122012098	site	dyads_test_vs_ctrl_m2	R	20	45	TTTCCAATACTGTACTTTCTTAACAA	9.0
2:130837654-130837855	site	dyads_test_vs_ctrl_m2	D	-21	4	TTTAAAATACAATTCTTTTTAAAATT	8.2
2:155390752-155390953	site	dyads_test_vs_ctrl_m2	D	-92	-67	CATCCAAAACACTATATAATAAAATT	11.0
2:170463506-170463707	site	dyads_test_vs_ctrl_m2	R	-23	2	ATTGCTGATAATCATACTCCGAAAGA	7.5
3:75517357-75517558	site	dyads_test_vs_ctrl_m2	D	0	25	TTTACAGATAAATGCAGTTTAATACT	7.6
3:103354917-103355118	site	dyads_test_vs_ctrl_m2	D	-1	24	TATTGAAATATCAAAATACTGAAATA	7.8
3:116631307-116631508	site	dyads_test_vs_ctrl_m2	D	-80	-55	TTTACAAAGTAACACTTTTTTAAATA	9.1
3:116631307-116631508	site	dyads_test_vs_ctrl_m2	R	-67	-42	TGTCCAGTTATATTATTTAAAAAAGT	7.8
4:11960810-11961011	site	dyads_test_vs_ctrl_m2	D	-40	-15	ATACCAGTTAAGTATTCACCCACAAT	7.6
4:44123859-44124060	site	dyads_test_vs_ctrl_m2	D	-32	-7	GATCATGTTCATTATAATCTCAAAGG	7.8
4:79327824-79328025	site	dyads_test_vs_ctrl_m2	R	29	54	TCTCCAGTTCTCCTTGGTCTGTAACA	7.8
4:95050997-95051198	site	dyads_test_vs_ctrl_m2	R	69	94	GCTACAGTAACCCTAAGATCCTAAAA	7.5
4:119137131-119137332	site	dyads_test_vs_ctrl_m2	R	0	25	TGTCCAGATATACTATAACTTAGTGT	7.7
4:129899341-129899542	site	dyads_test_vs_ctrl_m2	D	56	81	TTTGCGGATGCACATCGACCTAAACT	7.6
4:135867227-135867428	site	dyads_test_vs_ctrl_m2	R	10	35	TGTCCTAAAATGCTTACTTTCAAACT	8.2
4:136339831-136340032	site	dyads_test_vs_ctrl_m2	D	-61	-36	ATTCCAAACGTCGTCAGACCAACAAC	8.8
5:13526296-13526497	site	dyads_test_vs_ctrl_m2	R	10	35	TTTCATATATTTTAATTTTTTAAATG	9.1
5:22486759-22486960	site	dyads_test_vs_ctrl_m2	R	20	45	AATGATGTTATCTTAACACTGAAATT	7.5
5:43286854-43287055	site	dyads_test_vs_ctrl_m2	R	-24	1	CATCCAGTCTGCATAAAATCGAATTC	7.7
5:44406182-44406383	site	dyads_test_vs_ctrl_m2	D	-61	-36	ATTCTAAGTCACTTTTATTTCCAATA	7.7
5:106617408-106617609	site	dyads_test_vs_ctrl_m2	D	-95	-70	AATAAAGAACATTAGATTTTTAAAAT	8.5
5:129982605-129982806	site	dyads_test_vs_ctrl_m2	R	47	72	TATTTAATACAGTATCTATTCTAAAA	7.7
5:142529109-142529310	site	dyads_test_vs_ctrl_m2	D	75	100	CTTCTTATGCACCTAATATCTAAATT	8.9
6:8215473-8215674	site	dyads_test_vs_ctrl_m2	R	-22	3	TCTCAAATTTTCTAAGATCCCATATT	7.5
6:27230894-27231095	site	dyads_test_vs_ctrl_m2	R	49	74	GGTCCAATAAATTACGGATTCACAAA	9.4
6:31475433-31475634	site	dyads_test_vs_ctrl_m2	D	-45	-20	TGTCCTATAGTTTATAGTTTATATTA	8.8
6:31475433-31475634	site	dyads_test_vs_ctrl_m2	R	-26	-1	TCTACATTACTCTTAATATTAATATA	9.6
6:39142630-39142831	site	dyads_test_vs_ctrl_m2	D	75	100	CTTCCAAATAAATAGCTTTAAAAAAA	8.3
6:44792892-44793093	site	dyads_test_vs_ctrl_m2	R	-92	-67	TATCCAATAATTTTGTATTTTAGTTA	9.0
6:67284021-67284222	site	dyads_test_vs_ctrl_m2	D	-94	-69	ATCCCAAACAACTAAGAATTAAAAAA	9.0
6:67284021-67284222	site	dyads_test_vs_ctrl_m2	R	-8	17	TAGCTAGAGAAGTTCGTTTTCAAAAC	7.7
6:134541666-134541867	site	dyads_test_vs_ctrl_m2	D	-28	-3	ACTTCAATACGATTAGTTTCAGAATC	7.5
6:134925209-134925410	site	dyads_test_vs_ctrl_m2	D	-43	-18	TATACTAACTTATTTATGTTAAAAAG	7.8
7:13179821-13180022	site	dyads_test_vs_ctrl_m2	R	-98	-73	CTTCCAGATGTCAAACGTTTACAAAG	8.5
7:84615563-84615764	site	dyads_test_vs_ctrl_m2	D	60	85	GATACGGTGCTCTACATTCCCAAGGA	8.2
7:90445937-90446138	site	dyads_test_vs_ctrl_m2	R	-25	0	TATACAAAGAAATATATACAAAAATG	8.8
7:128442287-128442488	site	dyads_test_vs_ctrl_m2	D	22	47	GTTCCAAACATTTCAATTTTTAAAAT	9.0
7:128446639-128446840	site	dyads_test_vs_ctrl_m2	R	-66	-41	TTTTCAATTTTTTAATATTTCATATA	8.5
8:22580329-22580530	site	dyads_test_vs_ctrl_m2	D	54	79	GGTCCAGAAAAATCTATATCAACATT	7.8
8:52196270-52196471	site	dyads_test_vs_ctrl_m2	R	3	28	TTTACAGATATCTGTAAACTATTACA	7.6
8:90247387-90247588	site	dyads_test_vs_ctrl_m2	D	5	30	AATACAGTGTTTTTATTTTCCCAAAC	7.9
8:95825606-95825807	site	dyads_test_vs_ctrl_m2	R	-10	15	TATCCAGGTCTTTTAAGATCCATAAA	8.8
8:102633596-102633797	site	dyads_test_vs_ctrl_m2	D	-76	-51	TATACTAAAATAAGAACTTTAAAATT	7.7
9:3022432-3022633	site	dyads_test_vs_ctrl_m2	D	-53	-28	CGTCCTATAGTGGACATTTCTAAATT	9.2
9:25308163-25308364	site	dyads_test_vs_ctrl_m2	R	-56	-31	TATCTAAATTAAATGTTATTACAAAA	8.0
9:88451352-88451553	site	dyads_test_vs_ctrl_m2	D	51	76	TCTACAGAAATTTAAGTTTTAAAATA	10.9
9:120960296-120960497	site	dyads_test_vs_ctrl_m2	D	6	31	ATACCAGTTGCCTTTTATCCCAAAGT	8.9
X:13521794-13521995	site	dyads_test_vs_ctrl_m2	D	-12	13	TTTCCAAAAATATAACATTCCAAAGG	9.9
X:15366229-15366430	site	dyads_test_vs_ctrl_m2	R	-90	-65	AAACCAGACCTCCACTTTCTAAAAAT	7.9
X:51004277-51004478	site	dyads_test_vs_ctrl_m2	D	-87	-62	AATACAGATATCTATTTTATTAAAAA	10.5
X:51005059-51005260	site	dyads_test_vs_ctrl_m2	D	-81	-56	AATCAAATGCAACACGATTTAAAAAA	7.7
X:68717160-68717361	site	dyads_test_vs_ctrl_m2	R	-41	-16	TTTCAAATACTATACATTCCCAGAAT	7.8
X:106992710-106992911	site	dyads_test_vs_ctrl_m2	R	-6	19	TATACTGTAAAAATTAATTTACAAAA	7.8
X:153501184-153501385	site	dyads_test_vs_ctrl_m2	R	-76	-51	TGTACAATTTAATGTATACTTAGAGA	7.8
;
; Matrices
;	matrix	name                 	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	dyads_test_vs_ctrl_m2	26	4	0	-26.800	14.100	40.900	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                 	matches	scored
;	1	dyads_test_vs_ctrl_m2	133	0
;		TOTAL          	133	0
; Host name	rsat
; Job started	2025-09-18.095854
; Job done	2025-09-18.095855
; Seconds	0.26
;	user	0.26
;	system	0.02
;	cuser	0.08
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:8056450-8056651	site	dyads_test_vs_ctrl_m3	D	-22	7	ATCCATCAAAATTATGTATCATACAAACTG	8.4
1:8791917-8792118	site	dyads_test_vs_ctrl_m3	R	61	90	TACCGGCATGTCATGTTACCCAGAGAACTC	7.6
1:9746119-9746320	site	dyads_test_vs_ctrl_m3	R	-65	-36	ATCCGGACGATTACACTCCTGTAAATATAG	8.7
1:19153043-19153244	site	dyads_test_vs_ctrl_m3	D	-4	25	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
1:21511981-21512182	site	dyads_test_vs_ctrl_m3	R	21	50	AAGCATTTGTTATTGATGCTGTAAGAACTA	8.0
1:24613180-24613381	site	dyads_test_vs_ctrl_m3	R	22	51	TTCCTTATTGTTTGCCTACTACGACAACTA	8.4
1:55760127-55760328	site	dyads_test_vs_ctrl_m3	R	2	31	CTAAATCGTACCCTTATACTCTCAGATAAG	7.9
1:55760127-55760328	site	dyads_test_vs_ctrl_m3	R	24	53	CACCGTAACTCCTTACTACATTCTAAATCG	9.6
1:60692064-60692265	site	dyads_test_vs_ctrl_m3	R	-66	-37	CGCCAGAAGTTCTTTTATCCTTGAGAAGAC	8.1
1:95026280-95026481	site	dyads_test_vs_ctrl_m3	D	-3	26	GTCCAGCTTCGTTTATTTCATTAGATATTT	8.1
1:162671906-162672107	site	dyads_test_vs_ctrl_m3	D	8	37	ATATATATGTATATATATTTATATTTATAT	7.8
1:162671906-162672107	site	dyads_test_vs_ctrl_m3	D	10	39	ATATATGTATATATATTTATATTTATATAA	7.9
1:162671906-162672107	site	dyads_test_vs_ctrl_m3	R	10	39	TTATATAAATATAAATATATATACATATAT	8.3
1:162671906-162672107	site	dyads_test_vs_ctrl_m3	D	14	43	ATGTATATATATTTATATTTATATAAAAAG	7.8
1:162671906-162672107	site	dyads_test_vs_ctrl_m3	D	16	45	GTATATATATTTATATTTATATAAAAAGAC	11.7
1:164437163-164437364	site	dyads_test_vs_ctrl_m3	R	67	96	GTACAATTTTATTTTTTTCTGCAAGAAAAA	8.4
1:165866197-165866398	site	dyads_test_vs_ctrl_m3	R	7	36	CTGCAGAACCTTAGACTTGTGTACTAAGTA	7.8
1:172668785-172668986	site	dyads_test_vs_ctrl_m3	D	-22	7	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
1:172668785-172668986	site	dyads_test_vs_ctrl_m3	D	54	83	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
1:180802598-180802799	site	dyads_test_vs_ctrl_m3	R	-45	-16	TTCCATCCATTCACTATACTTTTCTAACTG	9.8
10:20325356-20325557	site	dyads_test_vs_ctrl_m3	R	18	47	GTTTATAATTTTTTTCTTCTCTAAATCCAT	8.0
10:40566180-40566381	site	dyads_test_vs_ctrl_m3	D	-57	-28	CTGCAGTCTGATCTGATTCTGTATTATCAA	7.7
10:58465078-58465279	site	dyads_test_vs_ctrl_m3	R	-27	2	TTCAGGAATACTATTCTTCTTTCTGATCAT	7.8
10:69019628-69019829	site	dyads_test_vs_ctrl_m3	D	-35	-6	CTACAGTGTACTTAGATATAATAATAAATA	8.2
10:85313742-85313943	site	dyads_test_vs_ctrl_m3	R	-79	-50	ACCTATATGAGCATCGATCTCTACAATCTT	7.9
10:99023572-99023773	site	dyads_test_vs_ctrl_m3	D	-100	-71	GTAGATACTTTTTTTGTTCTTCATAGACGG	7.5
10:108278716-108278917	site	dyads_test_vs_ctrl_m3	R	-68	-39	ATACAGTCAGCTACTATACGCTTTAAATGT	7.5
10:117815440-117815641	site	dyads_test_vs_ctrl_m3	D	-43	-14	ATACAGTACACCATTTTCATACATGTACAA	7.7
10:117815440-117815641	site	dyads_test_vs_ctrl_m3	R	60	89	CACGAGAGATTTTTACTTATATAATAGTTC	7.9
10:120923653-120923854	site	dyads_test_vs_ctrl_m3	D	29	58	ATACAGAAAGATTGGTTACTTTATATATTA	10.8
10:120923653-120923854	site	dyads_test_vs_ctrl_m3	R	45	74	TTAAAATATATATATATAATATATAAAGTA	7.8
10:122591143-122591344	site	dyads_test_vs_ctrl_m3	R	53	82	ATACATACATATATAATACATACACACACA	7.6
10:122591143-122591344	site	dyads_test_vs_ctrl_m3	R	61	90	ATTCATACATACATACATATATAATACATA	9.0
11:30099526-30099727	site	dyads_test_vs_ctrl_m3	R	-89	-60	TAACAAATTTTCATCTTACTGCACAATCAA	7.7
11:41142429-41142630	site	dyads_test_vs_ctrl_m3	R	-63	-34	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
11:41142429-41142630	site	dyads_test_vs_ctrl_m3	R	13	42	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
11:46243313-46243514	site	dyads_test_vs_ctrl_m3	D	-14	15	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
11:46243313-46243514	site	dyads_test_vs_ctrl_m3	D	62	91	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
11:53420947-53421148	site	dyads_test_vs_ctrl_m3	D	-58	-29	CCACATCTGTATAGTATATTATATGTATTT	7.6
11:53420947-53421148	site	dyads_test_vs_ctrl_m3	R	-56	-27	CAAAATACATATAATATACTATACAGATGT	8.9
11:69998373-69998574	site	dyads_test_vs_ctrl_m3	D	-94	-65	CCCCGTCGGACCTTCGAACTATCCAGACTT	8.4
11:75765378-75765579	site	dyads_test_vs_ctrl_m3	D	14	43	GTACAGATCTGTATTGTTCTTACTGAAACA	8.6
11:77529243-77529444	site	dyads_test_vs_ctrl_m3	D	-32	-3	ATACAATTAATACAGGTTATATACGAACTA	9.1
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	45	74	ATATATATATATATTTGTATATATTATCCT	7.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	47	76	ATATATATATATATATTTGTATATATTATC	8.5
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	49	78	GTATATATATATATATATTTGTATATATTA	9.6
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	51	80	ATATATACAAATATATATATATATATACAT	10.2
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	51	80	ATGTATATATATATATATATTTGTATATAT	8.1
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	53	82	ATATACAAATATATATATATATATACATAT	8.4
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	55	84	ATACAAATATATATATATATATACATATAT	10.7
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	59	88	ATATATATATGTATATATATATATATATTT	8.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	61	90	ATATATATATATATATACATATATATATAT	8.3
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	61	90	ATATATATATATGTATATATATATATATAT	9.4
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	63	92	ATATATATATATATACATATATATATATAG	9.8
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	63	92	CTATATATATATATGTATATATATATATAT	10.0
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	65	94	ATATATATATATACATATATATATATAGTT	8.2
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	65	94	AACTATATATATATATGTATATATATATAT	9.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	D	67	96	ATATATATATACATATATATATATAGTTAT	7.7
11:77709708-77709909	site	dyads_test_vs_ctrl_m3	R	71	100	TTAAATAACTATATATATATATGTATATAT	8.4
11:78696611-78696812	site	dyads_test_vs_ctrl_m3	D	5	34	TTCCATTCCCACATCCTTTTCTAAACACCT	8.1
11:85191658-85191859	site	dyads_test_vs_ctrl_m3	R	16	45	TTCGAGTATCACAACGTTCTGTCTAACTGG	7.8
11:86707074-86707275	site	dyads_test_vs_ctrl_m3	D	-18	11	ATCCAGGCGGTTAATATACTCCATAACACG	8.2
11:88049473-88049674	site	dyads_test_vs_ctrl_m3	D	69	98	ATACAGTTTTCCTTTACTCAGTACAATCTT	7.9
11:88083427-88083628	site	dyads_test_vs_ctrl_m3	R	-20	9	ATTTATAAAATTATTTTACACTAGGTACTA	7.7
11:98624944-98625145	site	dyads_test_vs_ctrl_m3	D	-69	-40	AAACAAAACTTTAATTTCCTGTACATACTC	7.6
11:98800007-98800208	site	dyads_test_vs_ctrl_m3	R	-97	-68	TAACAGGAGTCTTTCTTTCTGTATTTCCAA	7.6
12:8750134-8750335	site	dyads_test_vs_ctrl_m3	R	-83	-54	CTATAATTCTATATACATCTCTATAAACCT	9.0
12:26150409-26150610	site	dyads_test_vs_ctrl_m3	R	-73	-44	TTCCAGGGTCCTTCTCTTCTTTAGGAATTT	7.7
12:55095822-55096023	site	dyads_test_vs_ctrl_m3	R	25	54	TAAAATAAAACTCTATTTATATAAATATAT	8.7
12:82317882-82318083	site	dyads_test_vs_ctrl_m3	R	11	40	ATACAGCTCTCTTAAGTTCTCTATTATAGC	7.8
12:86881263-86881464	site	dyads_test_vs_ctrl_m3	D	44	73	AAACATACGACGAAAATAATGTCTATACAT	8.1
12:100206116-100206317	site	dyads_test_vs_ctrl_m3	R	-34	-5	CGCCATCAATATCTGCTTCTCTGATCATTT	7.9
12:100744724-100744925	site	dyads_test_vs_ctrl_m3	D	35	64	ACCCAGACGCGTTTAGTACTTCTCGATGAT	8.9
12:101058379-101058580	site	dyads_test_vs_ctrl_m3	R	-54	-25	CATCAGACATACAGAGTTCAGTATATACAA	8.7
13:9686159-9686360	site	dyads_test_vs_ctrl_m3	D	-58	-29	ATTTAAATATTCATTTTTCTCTAAGATCCA	7.6
13:66008519-66008720	site	dyads_test_vs_ctrl_m3	D	-2	27	TTCCATTGTTTTATATGATTTTCCTAACAA	7.7
13:107726003-107726204	site	dyads_test_vs_ctrl_m3	R	-76	-47	AAACAGAACACCTCCATCCTGTGATAAGTA	7.8
13:111361685-111361886	site	dyads_test_vs_ctrl_m3	R	-64	-35	CAACAGCAATATAACGTTCTGGAGCTACTA	7.9
13:111361685-111361886	site	dyads_test_vs_ctrl_m3	D	-58	-29	CTCCAGAACGTTATATTGCTGTTGGAATAT	8.7
14:13903319-13903520	site	dyads_test_vs_ctrl_m3	R	-89	-60	ATCTAACTATACTCATTTATATATAAAAAA	8.0
14:31700030-31700231	site	dyads_test_vs_ctrl_m3	D	-98	-69	CGTCTGTGTTTTATTATACTCTAAAATATA	9.0
14:52084144-52084345	site	dyads_test_vs_ctrl_m3	D	-24	5	GCCCACAATTTTGCCATACTTTGAAAAGAT	7.5
14:56959765-56959966	site	dyads_test_vs_ctrl_m3	R	-23	6	TATCATAAATATCTTTTACTAGAAGAACCC	10.7
14:120428892-120429093	site	dyads_test_vs_ctrl_m3	D	-3	26	AATAACTAAACATTGTTACTGTACATATTA	8.4
15:8358915-8359116	site	dyads_test_vs_ctrl_m3	R	17	46	TTACATTAAGACTTTCTCGTGTAAGATCTT	8.4
15:58054541-58054742	site	dyads_test_vs_ctrl_m3	R	-31	-2	ATGAATGTAAATATTGTACTTTTCAAACTC	8.1
15:76150410-76150611	site	dyads_test_vs_ctrl_m3	D	-89	-60	TACCGGCATGTCATGTTACCCAGAGAACTC	7.6
15:87473797-87473998	site	dyads_test_vs_ctrl_m3	R	-36	-7	GTCCATCCGTCCATCCATCTGTCCATCCCC	8.4
15:87473797-87473998	site	dyads_test_vs_ctrl_m3	R	-8	21	ATCCATCCGTCCGTCCGTCCATCCATCCGT	8.0
15:87473797-87473998	site	dyads_test_vs_ctrl_m3	R	-4	25	ATCCATCCATCCGTCCGTCCGTCCATCCAT	7.9
15:87473797-87473998	site	dyads_test_vs_ctrl_m3	R	0	29	ATCCATCCATCCATCCGTCCGTCCGTCCAT	8.5
15:87473797-87473998	site	dyads_test_vs_ctrl_m3	R	4	33	ATCCATCCATCCATCCATCCGTCCGTCCGT	8.3
16:31991021-31991222	site	dyads_test_vs_ctrl_m3	D	-42	-13	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
16:31991021-31991222	site	dyads_test_vs_ctrl_m3	D	34	63	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
16:33497994-33498195	site	dyads_test_vs_ctrl_m3	R	27	56	CTACAGAATATTTATTTTTTTTACTAAAAC	9.1
16:38243318-38243519	site	dyads_test_vs_ctrl_m3	R	-40	-11	GAACAGTAACTTTTTGCTCATTAATAACAG	8.2
16:38245133-38245334	site	dyads_test_vs_ctrl_m3	D	-83	-54	AAACAAAATTTATTATTATTATATATATAT	7.7
16:38245133-38245334	site	dyads_test_vs_ctrl_m3	R	-71	-42	CCACAGTCCTTTATATATATATAATAATAA	10.0
16:38245133-38245334	site	dyads_test_vs_ctrl_m3	R	-69	-40	ACCCACAGTCCTTTATATATATATAATAAT	7.7
16:52250508-52250709	site	dyads_test_vs_ctrl_m3	D	43	72	AAATATATATTCTATATTCTGTGGAAAATA	8.5
16:74197811-74198012	site	dyads_test_vs_ctrl_m3	R	37	66	CTCCAGAATCTCCTAATTCTTATTAAAAAT	7.8
16:76294177-76294378	site	dyads_test_vs_ctrl_m3	D	39	68	AGCCAGCAACGCTTCCTTCTTTACGTTTAA	9.5
16:84955073-84955274	site	dyads_test_vs_ctrl_m3	R	68	97	ACCCATCGGTGTTCATTTATAAAATAACGT	8.8
16:94692004-94692205	site	dyads_test_vs_ctrl_m3	D	-46	-17	ATCCAACATACCAATTTTCTGCTAATACAG	8.2
17:19718003-19718204	site	dyads_test_vs_ctrl_m3	R	-94	-65	ATTAAGTCATCTTATTTACTTTATTAAGAA	9.0
17:23344270-23344471	site	dyads_test_vs_ctrl_m3	R	-66	-37	GTTAAGATAGCATTAAGTCTGTAATAATAT	8.1
17:30395894-30396095	site	dyads_test_vs_ctrl_m3	D	-36	-7	ACCCAGACGCGTGTAGTACTTCTCGATGAT	8.2
17:74702371-74702572	site	dyads_test_vs_ctrl_m3	R	-29	0	TTACATAATTAGTTTCTTACATACAAATAT	7.7
17:82191826-82192027	site	dyads_test_vs_ctrl_m3	D	-56	-27	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
18:34909808-34910009	site	dyads_test_vs_ctrl_m3	D	-63	-34	GCACAGCAGTCTCGGCTACTTTCCGAACAT	11.3
18:35860873-35861074	site	dyads_test_vs_ctrl_m3	R	-5	24	GCCCAGGAAGTCTCGGTACTTTATAGATTC	8.6
18:36288773-36288974	site	dyads_test_vs_ctrl_m3	R	-79	-50	AAACCTACGTACCTTGAACTCTACAAACTT	7.6
18:38464343-38464544	site	dyads_test_vs_ctrl_m3	R	1	30	TTCGATGATTACAGAATTCTGCATTAACTA	8.2
18:46506114-46506315	site	dyads_test_vs_ctrl_m3	D	-70	-41	AAGTAAATCTCTTTTTTTATCTACAAACGT	8.3
18:51811837-51812038	site	dyads_test_vs_ctrl_m3	D	60	89	ATCCATCAATGTAATCCATTATATAAACAA	8.4
18:85848456-85848657	site	dyads_test_vs_ctrl_m3	D	9	38	CGATAGATTTCCATTTTTCGGTAGAGACCA	7.7
19:6592302-6592503	site	dyads_test_vs_ctrl_m3	D	28	57	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
19:14561454-14561655	site	dyads_test_vs_ctrl_m3	D	-35	-6	ACTTATAAAGATATTTTACAGTTAAAACCA	7.7
19:29809764-29809965	site	dyads_test_vs_ctrl_m3	D	-86	-57	TTTCATTAATTTTTCCTTCTGCGATTATAC	8.4
19:40622559-40622760	site	dyads_test_vs_ctrl_m3	R	-79	-50	CTTCACATACTCTTACTATTGTGGTAACTC	8.3
2:15631544-15631745	site	dyads_test_vs_ctrl_m3	R	-55	-26	CACTAAACATGTACTGTTCTTTGAAAATTA	7.7
2:19993021-19993222	site	dyads_test_vs_ctrl_m3	R	-80	-51	CTTCACATACTCTTACTATTGTGGTAACTC	8.3
2:30068968-30069169	site	dyads_test_vs_ctrl_m3	R	-86	-57	TGTTATATTTTTGTTCTACTTTCAAAATTT	7.7
2:37373353-37373554	site	dyads_test_vs_ctrl_m3	D	-6	23	TTCCATACTGACACCAGAATATCAAAACTA	8.1
2:64474632-64474833	site	dyads_test_vs_ctrl_m3	D	-83	-54	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
2:70023480-70023681	site	dyads_test_vs_ctrl_m3	R	-63	-34	ATACATTATACCATGTATATATAGCATCAG	7.6
2:109724142-109724343	site	dyads_test_vs_ctrl_m3	D	-63	-34	AGACAAAATTATCTATTTGTATATATACAT	8.4
2:131322086-131322287	site	dyads_test_vs_ctrl_m3	D	32	61	AGCCAATAATACAACCTTCTATCCGCATAT	9.4
2:147243322-147243523	site	dyads_test_vs_ctrl_m3	R	-88	-59	CCCCTGTAGGCTTATATTATTTAAAAACCT	9.5
2:155226364-155226565	site	dyads_test_vs_ctrl_m3	R	-92	-63	TCAAATATAACTTCTGTATTTTAAAAATAT	7.8
2:155226364-155226565	site	dyads_test_vs_ctrl_m3	R	-20	9	TTCCAGAACTAAACGTTTCTTCCATAAAAA	8.7
2:162908080-162908281	site	dyads_test_vs_ctrl_m3	R	-9	20	CTCCATCTGCCCCTGATTCTTTCCCAGCTA	7.9
3:34069069-34069270	site	dyads_test_vs_ctrl_m3	D	2	31	CGCCAGTCTTACATCGCACTTTCAGTTCCT	8.0
3:94984369-94984570	site	dyads_test_vs_ctrl_m3	D	-37	-8	CTCTATGGCTATTTCATACTTGTATAACTC	7.7
3:116560834-116561035	site	dyads_test_vs_ctrl_m3	D	-81	-52	AAACAAAACTTTAATTTCCTGTACATACTC	7.6
3:119719375-119719576	site	dyads_test_vs_ctrl_m3	D	13	42	AACCATTTTCCAAATCTTAATTACAAACTA	7.6
3:137866511-137866712	site	dyads_test_vs_ctrl_m3	D	-99	-70	TTCCAGTGGACTGTATCTCTGTGAAAAACA	7.5
3:157888666-157888867	site	dyads_test_vs_ctrl_m3	D	1	30	CGCCAGTTTCGCTTAATTTTCACATATCAG	7.9
4:73498188-73498389	site	dyads_test_vs_ctrl_m3	D	-59	-30	TGCCATCCAGTTTGTGTTCTTTCAGATCCA	8.3
4:74228178-74228379	site	dyads_test_vs_ctrl_m3	D	-57	-28	ACCCATACTTCTGGCCTTCTATCCCCACAG	7.5
4:74228178-74228379	site	dyads_test_vs_ctrl_m3	D	51	80	CGCCACCTCACTATCCCACTTTGCTAACTG	9.1
4:74303168-74303369	site	dyads_test_vs_ctrl_m3	D	-12	17	GACCATTAACCATTAATATTTTTGAAACTA	8.7
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	D	-98	-69	CTGAATATATATATATTTATATATGTATAT	9.6
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	D	-96	-67	GAATATATATATATTTATATATGTATATTA	8.1
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	R	-96	-67	TAATATACATATATAAATATATATATATTC	8.0
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	R	-94	-65	TTTAATATACATATATAAATATATATATAT	7.9
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	D	-92	-63	ATATATATATTTATATATGTATATTAAAAA	8.2
4:82294688-82294889	site	dyads_test_vs_ctrl_m3	D	-90	-61	ATATATATTTATATATGTATATTAAAAAAA	7.5
4:106136481-106136682	site	dyads_test_vs_ctrl_m3	R	-88	-59	TTACAGACGTTCTTAATGCTACAAGAGCAG	7.9
4:119278109-119278310	site	dyads_test_vs_ctrl_m3	D	-64	-35	GGCCTTTTTTTTTTTTTTCTTAAAAAACAC	8.2
4:129715921-129716122	site	dyads_test_vs_ctrl_m3	R	57	86	ATCCATATGGACGTTATTAAAAACAAACAG	8.2
4:146277742-146277943	site	dyads_test_vs_ctrl_m3	R	56	85	ATACAGTGTATCTATGTACTATATGTGCCC	8.4
5:13526296-13526497	site	dyads_test_vs_ctrl_m3	R	-64	-35	AAACATATTATTGGTATTATTATAAAACTA	8.3
5:29833047-29833248	site	dyads_test_vs_ctrl_m3	D	24	53	GGACAATATTCTGTCTTTCTTTCCGATCCC	8.8
5:76232688-76232889	site	dyads_test_vs_ctrl_m3	D	-5	24	GACCACTTATCTTTCAAAATATCTAAACAT	8.6
5:92187897-92188098	site	dyads_test_vs_ctrl_m3	R	-12	17	GCTAATAAATCCTAGTTTCTCTATGAAATT	7.9
5:108085485-108085686	site	dyads_test_vs_ctrl_m3	D	-36	-7	AGTAACACTTTTGTGTTACTATAAAAAATT	8.1
5:110117765-110117966	site	dyads_test_vs_ctrl_m3	D	-89	-60	CACCACTATTACTATGTCCTATCATAACAT	11.7
5:149048501-149048702	site	dyads_test_vs_ctrl_m3	D	-35	-6	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
5:149048501-149048702	site	dyads_test_vs_ctrl_m3	D	41	70	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
6:16238269-16238470	site	dyads_test_vs_ctrl_m3	R	-64	-35	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
6:16238269-16238470	site	dyads_test_vs_ctrl_m3	R	52	81	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
6:31475433-31475634	site	dyads_test_vs_ctrl_m3	R	-31	-2	CTACATTACTCTTAATATTAATATAAACTA	8.7
6:31475433-31475634	site	dyads_test_vs_ctrl_m3	R	-21	8	CTCTAGCCCTCTACATTACTCTTAATATTA	8.4
6:83362600-83362801	site	dyads_test_vs_ctrl_m3	D	-45	-16	CAGCATAAATTTACTGTACTAAGATATCTA	8.9
6:98061195-98061396	site	dyads_test_vs_ctrl_m3	D	-29	0	GTTCATCTTTCTATATATCTCCCCAAAACG	8.0
6:113153052-113153253	site	dyads_test_vs_ctrl_m3	R	-48	-19	TTACATACGTTTTATATAATATACAAAGAA	11.4
6:116174085-116174286	site	dyads_test_vs_ctrl_m3	D	3	32	TTCCAGTGGACTGTATCTCTGTGAAAAACA	7.5
6:142970384-142970585	site	dyads_test_vs_ctrl_m3	D	-5	24	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
7:90208138-90208339	site	dyads_test_vs_ctrl_m3	D	-98	-69	TTACATAACATTAATATTATATCAGACCTC	9.8
7:96202699-96202900	site	dyads_test_vs_ctrl_m3	D	-74	-45	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
7:96202699-96202900	site	dyads_test_vs_ctrl_m3	D	2	31	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
7:99090278-99090479	site	dyads_test_vs_ctrl_m3	R	59	88	ATGTAGGTTTTCATTTTTCTTTTATAACGA	8.7
7:111072120-111072321	site	dyads_test_vs_ctrl_m3	D	32	61	TTACAGTTAAGAATTTTTCTGTAACAACCA	9.7
8:3995673-3995874	site	dyads_test_vs_ctrl_m3	R	68	97	CTTCAGCTGTTTTCTGTATTCTACAAACAT	8.5
8:61363928-61364129	site	dyads_test_vs_ctrl_m3	D	2	31	TCGCTTTTCCCCATATTTCTTTGTAAACTC	8.6
8:126981352-126981553	site	dyads_test_vs_ctrl_m3	D	-31	-2	CTAAAGACACATTCGGTAGTGTGTTAACTA	7.7
8:126981352-126981553	site	dyads_test_vs_ctrl_m3	D	45	74	TTACATTTCAATTTTTTTCTTTAAAAGGAG	8.1
9:57128069-57128270	site	dyads_test_vs_ctrl_m3	R	-51	-22	GCACATCAAAGCATATTTCTTTAATAAAAA	9.7
9:72430772-72430973	site	dyads_test_vs_ctrl_m3	D	37	66	CTAAAGACACATTTGGTAGTGTGTTAACTA	7.8
9:81677768-81677969	site	dyads_test_vs_ctrl_m3	R	-67	-38	TGTTATATTTTTGTTCTACTTTCAAAATTT	7.7
9:109363602-109363803	site	dyads_test_vs_ctrl_m3	R	-38	-9	ATCCATCAATGTAATCCATTATATAAACAA	8.4
X:3084861-3085062	site	dyads_test_vs_ctrl_m3	R	70	99	ATCCATCAGCATAATCCACTATATAAACAA	10.7
X:13156341-13156542	site	dyads_test_vs_ctrl_m3	D	56	85	TGGAATGCATATATACTTTTTTATGAACGA	7.6
X:13156341-13156542	site	dyads_test_vs_ctrl_m3	D	60	89	ATGCATATATACTTTTTTATGAACGAATGG	8.7
X:51004277-51004478	site	dyads_test_vs_ctrl_m3	D	-86	-57	ATACAGATATCTATTTTATTAAAAAAGTTA	9.4
;
; Matrices
;	matrix	name                 	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	dyads_test_vs_ctrl_m3	30	4	0	-24.500	17.200	41.700	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                 	matches	scored
;	1	dyads_test_vs_ctrl_m3	186	0
;		TOTAL          	186	0
; Host name	rsat
; Job started	2025-09-18.095855
; Job done	2025-09-18.095856
; Seconds	0.27
;	user	0.27
;	system	0.01
;	cuser	0.11
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26985
;		c	0.23075
;		g	0.23198
;		t	0.26741
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
1:8056450-8056651	site	dyads_test_vs_ctrl_m4	D	-82	-55	ACGCATGTTATCTTTAATGTATAAAAAT	7.9
1:8056450-8056651	site	dyads_test_vs_ctrl_m4	R	-73	-46	TGGAATTATATTTTTATACATTAAAGAT	7.9
1:19153043-19153244	site	dyads_test_vs_ctrl_m4	D	72	99	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
1:54996983-54997184	site	dyads_test_vs_ctrl_m4	D	-88	-61	TGGTAGAATAGATTACCTCTTGACAAGT	7.5
1:55000254-55000455	site	dyads_test_vs_ctrl_m4	D	68	95	CACCTAATTTTCATAATACAATCCAAAT	7.7
1:55152813-55153014	site	dyads_test_vs_ctrl_m4	D	-22	5	CCATATTATAGCTTATTTGTTTAGTATA	8.1
1:55760127-55760328	site	dyads_test_vs_ctrl_m4	R	4	31	CTAAATCGTACCCTTATACTCTCAGATA	8.5
1:63165051-63165252	site	dyads_test_vs_ctrl_m4	D	-41	-14	TTATAGATTTTCTTTTTACAGTTAACAT	7.9
1:71294884-71295085	site	dyads_test_vs_ctrl_m4	R	-58	-31	CTCAAGTTTGGCAATATTCTTCCCAAGA	8.3
1:72004272-72004473	site	dyads_test_vs_ctrl_m4	R	-9	18	TTGTAGATTCGCATGTATGTGGCCAAAG	7.9
1:86352461-86352662	site	dyads_test_vs_ctrl_m4	R	25	52	TTTAAGTAACCTTTCCTACAGTGCAACA	7.9
1:93431308-93431509	site	dyads_test_vs_ctrl_m4	D	38	65	TTGCAGTTTCTCTCCGTTTTTGCCAATA	9.3
1:95026280-95026481	site	dyads_test_vs_ctrl_m4	D	-3	24	GTCCAGCTTCGTTTATTTCATTAGATAT	8.3
1:108460137-108460338	site	dyads_test_vs_ctrl_m4	R	-77	-50	AAGGAAAATTATTTTTTTCTACAAAATT	8.3
1:108460137-108460338	site	dyads_test_vs_ctrl_m4	R	-11	16	ATATAGTATTGTTTTATACTTAAAATTA	11.5
1:108460137-108460338	site	dyads_test_vs_ctrl_m4	R	-6	21	TAAAAATATAGTATTGTTTTATACTTAA	8.2
1:146928084-146928285	site	dyads_test_vs_ctrl_m4	D	29	56	AATCATTTTTCGTTAATATTGTTCAACA	8.8
1:149343933-149344134	site	dyads_test_vs_ctrl_m4	R	-68	-41	TTAACTATTATTTTTGTACTTATAAAAA	7.6
1:149343933-149344134	site	dyads_test_vs_ctrl_m4	D	57	84	ATCAAAAATTATATGGTAGTATGCATTA	7.5
1:155097516-155097717	site	dyads_test_vs_ctrl_m4	D	-61	-34	ACGTAAAGTTACATTTTTATACAAAAAT	7.8
1:155097516-155097717	site	dyads_test_vs_ctrl_m4	R	-33	-6	GTACAGTATTTTCTCCTTCTCTGTATTG	8.9
1:162671906-162672107	site	dyads_test_vs_ctrl_m4	R	4	31	ATATAAATATATATACATATATATAATT	8.9
1:162671906-162672107	site	dyads_test_vs_ctrl_m4	D	6	33	TTATATATATGTATATATATTTATATTT	7.8
1:162671906-162672107	site	dyads_test_vs_ctrl_m4	D	10	37	ATATATGTATATATATTTATATTTATAT	8.5
1:162671906-162672107	site	dyads_test_vs_ctrl_m4	R	12	39	TTATATAAATATAAATATATATACATAT	8.0
1:162671906-162672107	site	dyads_test_vs_ctrl_m4	D	14	41	ATGTATATATATTTATATTTATATAAAA	9.7
1:162671906-162672107	site	dyads_test_vs_ctrl_m4	D	16	43	GTATATATATTTATATTTATATAAAAAG	10.4
1:164437163-164437364	site	dyads_test_vs_ctrl_m4	R	71	98	TTGTACAATTTTATTTTTTTCTGCAAGA	8.1
1:172668785-172668986	site	dyads_test_vs_ctrl_m4	D	54	81	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
10:7458743-7458944	site	dyads_test_vs_ctrl_m4	R	-1	26	CTGGGATATCTTTTTCTTCTGTGCAACC	7.7
10:20325356-20325557	site	dyads_test_vs_ctrl_m4	R	20	47	GTTTATAATTTTTTTCTTCTCTAAATCC	8.8
10:21999423-21999624	site	dyads_test_vs_ctrl_m4	R	-62	-35	TTTCAATAGGTTTTAGTTATTAACTATA	7.6
10:39822406-39822607	site	dyads_test_vs_ctrl_m4	R	-80	-53	TCTATTAATAATAATATACTTTATAATG	9.2
10:58465078-58465279	site	dyads_test_vs_ctrl_m4	R	-25	2	TTCAGGAATACTATTCTTCTTTCTGATC	7.9
10:58480024-58480225	site	dyads_test_vs_ctrl_m4	R	-81	-54	TTGTTTATTATCATAATTCTGTAAGATC	7.8
10:69019628-69019829	site	dyads_test_vs_ctrl_m4	R	-26	1	TTTGATTTATTTATTATTATATCTAAGT	8.3
10:85313742-85313943	site	dyads_test_vs_ctrl_m4	R	-77	-50	ACCTATATGAGCATCGATCTCTACAATC	7.9
10:117349231-117349432	site	dyads_test_vs_ctrl_m4	D	-16	11	ATGCAGATTTGCTTTATTCAGATCTATT	8.1
10:117815440-117815641	site	dyads_test_vs_ctrl_m4	D	-94	-67	AGGATTTACATTATTGTACTCTCCAATA	9.4
10:120923653-120923854	site	dyads_test_vs_ctrl_m4	D	29	56	ATACAGAAAGATTGGTTACTTTATATAT	9.1
10:120923653-120923854	site	dyads_test_vs_ctrl_m4	R	47	74	TTAAAATATATATATATAATATATAAAG	9.8
10:120923653-120923854	site	dyads_test_vs_ctrl_m4	D	49	76	TTATATATTATATATATATATTTTAACA	7.7
10:120923653-120923854	site	dyads_test_vs_ctrl_m4	D	51	78	ATATATTATATATATATATTTTAACACA	8.7
11:23489473-23489674	site	dyads_test_vs_ctrl_m4	D	26	53	ATTAAGTTTACTTGTATACGGAACAACC	8.6
11:30099526-30099727	site	dyads_test_vs_ctrl_m4	R	-87	-60	TAACAAATTTTCATCTTACTGCACAATC	9.8
11:41142429-41142630	site	dyads_test_vs_ctrl_m4	R	-61	-34	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
11:46243313-46243514	site	dyads_test_vs_ctrl_m4	D	62	89	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
11:63846556-63846757	site	dyads_test_vs_ctrl_m4	D	-74	-47	ATGTAGGTTTTCATTTCTCTTTCATAAC	7.7
11:65688532-65688733	site	dyads_test_vs_ctrl_m4	D	-77	-50	TTTGATAATTTTTATATACTTTCATATG	9.1
11:74077871-74078072	site	dyads_test_vs_ctrl_m4	D	-67	-40	ATGTAGGTTTTCATTTCTCTTTCATAAT	7.7
11:75765378-75765579	site	dyads_test_vs_ctrl_m4	D	14	41	GTACAGATCTGTATTGTTCTTACTGAAA	8.5
11:77529243-77529444	site	dyads_test_vs_ctrl_m4	D	16	43	AAGAATACTGACAATATACTGTACAATA	10.1
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	29	56	ATATATTATCCTGTGATTCTACTTATGG	7.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	49	76	ATATATATATATATATTTGTATATATTA	10.6
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	51	78	GTATATATATATATATATTTGTATATAT	8.9
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	53	80	ATGTATATATATATATATATTTGTATAT	8.6
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	D	55	82	ATACAAATATATATATATATATACATAT	10.2
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	59	86	ATATATATGTATATATATATATATATTT	8.7
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	61	88	ATATATATATGTATATATATATATATAT	9.3
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	D	63	90	ATATATATATATATACATATATATATAT	9.2
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	63	90	ATATATATATATGTATATATATATATAT	8.2
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	D	65	92	ATATATATATATACATATATATATATAG	7.7
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	R	65	92	CTATATATATATATGTATATATATATAT	8.7
11:77709708-77709909	site	dyads_test_vs_ctrl_m4	D	67	94	ATATATATATACATATATATATATAGTT	8.1
11:80395716-80395917	site	dyads_test_vs_ctrl_m4	R	-22	5	ACCAAATTTACTATACTTCACTTCTAAA	7.7
11:85191658-85191859	site	dyads_test_vs_ctrl_m4	R	18	45	TTCGAGTATCACAACGTTCTGTCTAACT	11.0
11:86270155-86270356	site	dyads_test_vs_ctrl_m4	D	-19	8	ACACAGTGAACTTCATTACTGTACATGT	8.1
11:88049473-88049674	site	dyads_test_vs_ctrl_m4	D	69	96	ATACAGTTTTCCTTTACTCAGTACAATC	10.3
11:93945469-93945670	site	dyads_test_vs_ctrl_m4	D	-100	-73	GCACAGGTTTACCTCATTCTATGCAAGA	8.6
11:94292298-94292499	site	dyads_test_vs_ctrl_m4	R	-97	-70	TTGTGTATCCTTTTTGTTCTTTACAAGA	8.2
11:115724571-115724772	site	dyads_test_vs_ctrl_m4	D	33	60	TTGTAGATTCGCATGTATGTGGCCAAAG	7.9
12:3247478-3247679	site	dyads_test_vs_ctrl_m4	R	-86	-59	ATTCGGTTTCATACTCTACTTAACAATT	9.0
12:3249591-3249792	site	dyads_test_vs_ctrl_m4	R	-88	-61	TTGCGGACTATTATAATTTTCTTCAAAC	8.5
12:3249591-3249792	site	dyads_test_vs_ctrl_m4	D	-86	-59	TTGAAGAAAATTATAATAGTCCGCAAGC	7.7
12:8750134-8750335	site	dyads_test_vs_ctrl_m4	R	-81	-54	CTATAATTCTATATACATCTCTATAAAC	8.9
12:14929895-14930096	site	dyads_test_vs_ctrl_m4	R	-3	24	TTATAGTAACCTTTACAACTTTGCCATA	9.0
12:67037108-67037309	site	dyads_test_vs_ctrl_m4	D	-44	-17	ACGTAAATATTTTTAATATTTTATAATC	10.2
12:67511096-67511297	site	dyads_test_vs_ctrl_m4	R	47	74	CTGGGATATCTTTTTCTTCTGTGCAACC	7.7
12:82317882-82318083	site	dyads_test_vs_ctrl_m4	R	-97	-70	ATACAGCTCTCTTGAGTTCTCTATTATA	8.1
12:82317882-82318083	site	dyads_test_vs_ctrl_m4	R	13	40	ATACAGCTCTCTTAAGTTCTCTATTATA	8.7
12:100744724-100744925	site	dyads_test_vs_ctrl_m4	D	35	62	ACCCAGACGCGTTTAGTACTTCTCGATG	8.1
12:108815790-108815991	site	dyads_test_vs_ctrl_m4	R	-95	-68	TTAAAGTATTTTTTAAATTTTTACTACT	8.3
13:9686159-9686360	site	dyads_test_vs_ctrl_m4	R	51	78	ATTGTGTTTTCATTATTTCTTTTCAATA	9.4
13:21192171-21192372	site	dyads_test_vs_ctrl_m4	R	48	75	ATGTAAGAGCCCAATATTCTTTCCCATA	9.0
13:40063550-40063751	site	dyads_test_vs_ctrl_m4	D	-40	-13	ATAAAGATACATTATTTACTTTCCTTCA	7.8
13:51149056-51149257	site	dyads_test_vs_ctrl_m4	D	-42	-15	ATGACGATTTCCATATTTACGTCTACGA	7.7
13:66008519-66008720	site	dyads_test_vs_ctrl_m4	R	63	90	CAGCAGATTTTTTTTTATATATATATAA	9.0
13:67460533-67460734	site	dyads_test_vs_ctrl_m4	R	73	100	GTATAAATCACTTATTTTCCTTCTAATA	7.9
13:69655081-69655282	site	dyads_test_vs_ctrl_m4	R	-10	17	TTAAAGCTATATTTCAAACTATTCAAAA	7.5
13:97099401-97099602	site	dyads_test_vs_ctrl_m4	D	-93	-66	AATAAATATTATCTTATTCTTTACTCTG	7.8
13:107726003-107726204	site	dyads_test_vs_ctrl_m4	R	-1	26	ACATAGCTCTCCTGTTTTCTGTATACGT	7.9
14:16430394-16430595	site	dyads_test_vs_ctrl_m4	R	-100	-73	CTGCAAAATATTTTACTTCTTTCCTAGC	11.9
14:19417204-19417405	site	dyads_test_vs_ctrl_m4	R	67	94	TCTGTGATTTTCATTTTTCTCGCCATAT	7.6
14:20523872-20524073	site	dyads_test_vs_ctrl_m4	R	-80	-53	TATAAGAAGTTTATGTTTCATACGAAAA	8.1
14:31700030-31700231	site	dyads_test_vs_ctrl_m4	D	-98	-71	CGTCTGTGTTTTATTATACTCTAAAATA	10.1
14:56956861-56957062	site	dyads_test_vs_ctrl_m4	D	-34	-7	TTTGAATACCCTATTCTACTTTAACACT	7.7
14:73955269-73955470	site	dyads_test_vs_ctrl_m4	R	-63	-36	TTGAAGCATTTCTTAATTCTCAAAAAGC	8.5
14:98025102-98025303	site	dyads_test_vs_ctrl_m4	D	-25	2	CAGTAACTCCACATCATACTTATCAATA	8.3
14:122158883-122159084	site	dyads_test_vs_ctrl_m4	D	33	60	TTATAGGAGGCCATAATACTGATGAAAG	7.5
15:58054541-58054742	site	dyads_test_vs_ctrl_m4	R	-29	-2	ATGAATGTAAATATTGTACTTTTCAAAC	9.4
15:63931176-63931377	site	dyads_test_vs_ctrl_m4	D	-5	22	AAGCAATATTAAATATTAGTTTTCAAAA	9.6
15:73428306-73428507	site	dyads_test_vs_ctrl_m4	D	-12	15	CTGGGATATCTTTTTCTTCTGTGCAACC	7.7
15:96403283-96403484	site	dyads_test_vs_ctrl_m4	D	-62	-35	TTGTATTATTCTTCCATTCTTAATACTG	8.3
16:11220452-11220653	site	dyads_test_vs_ctrl_m4	D	-21	6	CTGTAGGTTTTCATTATTGTAGGCAATT	8.0
16:15630318-15630519	site	dyads_test_vs_ctrl_m4	D	-71	-44	AAGCAATTTCACACGTTTCTCTGAAAAA	7.8
16:31991021-31991222	site	dyads_test_vs_ctrl_m4	D	34	61	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
16:31991627-31991828	site	dyads_test_vs_ctrl_m4	D	-97	-70	ATGTAGGTTTTCATTTCTCTTTCATAAT	7.7
16:33497994-33498195	site	dyads_test_vs_ctrl_m4	R	29	56	CTACAGAATATTTATTTTTTTTACTAAA	10.7
16:38243318-38243519	site	dyads_test_vs_ctrl_m4	D	-83	-56	TTTAAGTTTTATTGTTTTGTATGTAAAT	7.5
16:38245133-38245334	site	dyads_test_vs_ctrl_m4	D	-83	-56	AAACAAAATTTATTATTATTATATATAT	9.1
16:38245133-38245334	site	dyads_test_vs_ctrl_m4	D	-81	-54	ACAAAATTTATTATTATTATATATATAT	9.7
16:52250508-52250709	site	dyads_test_vs_ctrl_m4	D	43	70	AAATATATATTCTATATTCTGTGGAAAA	8.1
16:74197811-74198012	site	dyads_test_vs_ctrl_m4	R	39	66	CTCCAGAATCTCCTAATTCTTATTAAAA	9.4
16:84955073-84955274	site	dyads_test_vs_ctrl_m4	D	44	71	AAACGGAAGGGTTTGTTTCTTTCCACGT	8.0
16:87371812-87372013	site	dyads_test_vs_ctrl_m4	R	-80	-53	CTGCAGAATACATTCTTCCTCAACAAAT	8.9
17:10206843-10207044	site	dyads_test_vs_ctrl_m4	R	15	42	ATGTATTTTTTGTCTATTCTTTATTATC	7.9
17:26269634-26269835	site	dyads_test_vs_ctrl_m4	D	5	32	GTGCTGCATACTATCCTCCTAGCCAAAT	8.4
17:74702371-74702572	site	dyads_test_vs_ctrl_m4	R	-27	0	TTACATAATTAGTTTCTTACATACAAAT	8.0
17:78375916-78376117	site	dyads_test_vs_ctrl_m4	R	57	84	TATAATAATAAATTAATTTTTTTTAAGT	7.6
17:78375916-78376117	site	dyads_test_vs_ctrl_m4	D	67	94	AATTAATTTATTATTATAATGACCTAAT	8.1
17:79864923-79865124	site	dyads_test_vs_ctrl_m4	D	-97	-70	GTACATTTTAACATATTAATCATTAATA	8.7
17:82191826-82192027	site	dyads_test_vs_ctrl_m4	D	-56	-29	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
17:82191826-82192027	site	dyads_test_vs_ctrl_m4	R	0	27	GCGCAGTTTTTTTTTCTTGTCTATAAAG	10.3
17:83425037-83425238	site	dyads_test_vs_ctrl_m4	R	-1	26	ATAACTAATTTATTATTTTTATTCAATA	8.0
17:83425037-83425238	site	dyads_test_vs_ctrl_m4	D	49	76	ACGCACTTTATTATTTTGCTTTTTAAGT	7.7
18:7679541-7679742	site	dyads_test_vs_ctrl_m4	D	45	72	ATGCATATTTATTTGTTTATTTATTTAT	8.1
18:34909808-34910009	site	dyads_test_vs_ctrl_m4	D	-63	-36	GCACAGCAGTCTCGGCTACTTTCCGAAC	8.1
18:42071288-42071489	site	dyads_test_vs_ctrl_m4	D	-6	21	TTTTAATATTATTTACTTATTTTTATTT	8.0
18:46506114-46506315	site	dyads_test_vs_ctrl_m4	D	-70	-43	AAGTAAATCTCTTTTTTTATCTACAAAC	9.5
18:73592182-73592383	site	dyads_test_vs_ctrl_m4	D	49	76	TATCAATATAGTTTAGTATTTGCTAATT	8.8
18:79856329-79856530	site	dyads_test_vs_ctrl_m4	R	-27	0	CTGTCTAATTCTTTATTAATTTAAAATA	8.2
18:79856329-79856530	site	dyads_test_vs_ctrl_m4	R	-9	18	GTTATTATGCCTATCATTCTGTCTAATT	8.1
18:79856329-79856530	site	dyads_test_vs_ctrl_m4	D	42	69	TTTCTGATTTATTTTATTTTAATCAAAT	7.6
18:79856329-79856530	site	dyads_test_vs_ctrl_m4	D	67	94	AATTATAATTACATCTTTTTCTCCTACC	8.4
18:84082530-84082731	site	dyads_test_vs_ctrl_m4	D	64	91	TGGTATTTTTGTATTTTTTTATATAAGG	9.1
18:85848456-85848657	site	dyads_test_vs_ctrl_m4	D	9	36	CGATAGATTTCCATTTTTCGGTAGAGAC	7.9
19:6592878-6593079	site	dyads_test_vs_ctrl_m4	D	23	50	ATGTAGGTTTTCATTTCTCTTTCATAAC	7.7
19:21280422-21280623	site	dyads_test_vs_ctrl_m4	R	32	59	ATGTAGTAATTTTATATTCTCTGGATTT	8.2
19:28763056-28763257	site	dyads_test_vs_ctrl_m4	R	12	39	GGTCAGGTGGCCATTCTTCTGTTCAAAT	8.5
19:41214718-41214919	site	dyads_test_vs_ctrl_m4	R	10	37	ATGCAGTAGGCTTTACTACAGTACATGG	10.0
19:61175553-61175754	site	dyads_test_vs_ctrl_m4	D	-58	-31	CATTAGACATTCTTTTTTCTCTACCACG	7.9
2:9041229-9041430	site	dyads_test_vs_ctrl_m4	D	41	68	TCACAAAATCCGATGCTTCTTTCACAGA	7.8
2:15631544-15631745	site	dyads_test_vs_ctrl_m4	D	-71	-44	TTTTAAAATTCAATTTTAATTTTCAAAG	7.9
2:22554307-22554508	site	dyads_test_vs_ctrl_m4	R	-48	-21	CCACAGTTATGTTTATATCTAAACCATA	7.8
2:30068968-30069169	site	dyads_test_vs_ctrl_m4	R	-84	-57	TGTTATATTTTTGTTCTACTTTCAAAAT	8.9
2:30068968-30069169	site	dyads_test_vs_ctrl_m4	R	-76	-49	GCGGAGTTTGTTATATTTTTGTTCTACT	9.1
2:37429653-37429854	site	dyads_test_vs_ctrl_m4	R	36	63	GTGATGTATCCATTTATATTAACGATAC	7.7
2:64474632-64474833	site	dyads_test_vs_ctrl_m4	D	-83	-56	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
2:70023480-70023681	site	dyads_test_vs_ctrl_m4	R	-61	-34	ATACATTATACCATGTATATATAGCATC	8.6
2:72970852-72971053	site	dyads_test_vs_ctrl_m4	R	30	57	GGAAATATTACCTTTGTACCAATCAATA	7.7
2:104428319-104428520	site	dyads_test_vs_ctrl_m4	D	9	36	CTACAATATACTTGAGGTCTATGCAAAA	8.8
2:109724142-109724343	site	dyads_test_vs_ctrl_m4	D	-63	-36	AGACAAAATTATCTATTTGTATATATAC	8.0
2:122011897-122012098	site	dyads_test_vs_ctrl_m4	R	-10	17	ATACAAAATATCAAACTTCTCTTTAGAA	7.9
2:155390752-155390953	site	dyads_test_vs_ctrl_m4	D	-84	-57	ACACTATATAATAAAATTATTTACAACA	8.4
3:13669877-13670078	site	dyads_test_vs_ctrl_m4	D	-68	-41	ATGTAGGTTTTCATTTCTCTTTCATAAC	7.7
3:16214339-16214540	site	dyads_test_vs_ctrl_m4	R	-25	2	GATTATTTTGCTTTTAATCTGTCAAATA	8.6
3:54810647-54810848	site	dyads_test_vs_ctrl_m4	R	-85	-58	TCGAATTAGAGTCGATTTCTCTATAACA	8.2
3:90361374-90361575	site	dyads_test_vs_ctrl_m4	R	69	96	TTCATGTTTTTTTTTTTTCTACACAATG	8.1
3:152233525-152233726	site	dyads_test_vs_ctrl_m4	R	-86	-59	ATGTAGTCTAATATATTAATATGCAAAG	10.2
3:152233525-152233726	site	dyads_test_vs_ctrl_m4	D	-84	-57	TTGCATATTAATATATTAGACTACATGC	8.2
4:29603907-29604108	site	dyads_test_vs_ctrl_m4	D	-91	-64	ATATAATATATGTCAAATATTTACAATA	7.7
4:82294688-82294889	site	dyads_test_vs_ctrl_m4	D	-98	-71	CTGAATATATATATATTTATATATGTAT	7.9
4:82294688-82294889	site	dyads_test_vs_ctrl_m4	D	-94	-67	ATATATATATATTTATATATGTATATTA	8.8
4:82294688-82294889	site	dyads_test_vs_ctrl_m4	D	-92	-65	ATATATATATTTATATATGTATATTAAA	7.9
4:82294688-82294889	site	dyads_test_vs_ctrl_m4	D	-90	-63	ATATATATTTATATATGTATATTAAAAA	9.0
4:82294688-82294889	site	dyads_test_vs_ctrl_m4	D	46	73	AAAAAGCATACATTATTTCTTTTTTAAA	8.1
4:95632907-95633108	site	dyads_test_vs_ctrl_m4	D	-31	-4	ATTATTATTATTATTATTATTTACCATT	8.8
4:135867227-135867428	site	dyads_test_vs_ctrl_m4	R	-39	-12	ATGTAGTTTTCGATAATTCTTTTATCTT	8.5
4:146277742-146277943	site	dyads_test_vs_ctrl_m4	R	58	85	ATACAGTGTATCTATGTACTATATGTGC	8.5
5:22612641-22612842	site	dyads_test_vs_ctrl_m4	D	-75	-48	CTGGGATATCTTTTTCTTCTGTGCAACC	7.7
5:22693550-22693751	site	dyads_test_vs_ctrl_m4	D	27	54	GCGAAGATCAAAATTCTTCTTTACAATT	9.6
5:29833047-29833248	site	dyads_test_vs_ctrl_m4	D	24	51	GGACAATATTCTGTCTTTCTTTCCGATC	10.4
5:32491031-32491232	site	dyads_test_vs_ctrl_m4	D	58	85	GTAAAGGATCTTAAATTTTTTTCTAATA	8.3
5:108085485-108085686	site	dyads_test_vs_ctrl_m4	D	-15	12	TAAAAAATTACTTATTTTATTTATATGA	7.6
5:115298600-115298801	site	dyads_test_vs_ctrl_m4	R	3	30	GGTCAGGTGGCCATTCTTCTGTTCAAAT	8.5
5:149048501-149048702	site	dyads_test_vs_ctrl_m4	D	41	68	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
6:10600556-10600757	site	dyads_test_vs_ctrl_m4	D	-82	-55	ATATATATTTGGTTTCTACTATTAAAGT	9.7
6:16238269-16238470	site	dyads_test_vs_ctrl_m4	R	-62	-35	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
6:44792892-44793093	site	dyads_test_vs_ctrl_m4	R	-75	-48	GCATAGTTCACCATCTAAGTATCCAATA	7.5
6:71683735-71683936	site	dyads_test_vs_ctrl_m4	D	46	73	ATAAAGCTTCCCTCGTGTCTGTACATAG	8.0
6:83362600-83362801	site	dyads_test_vs_ctrl_m4	R	-84	-57	TTGTATAATTTTTACCTTTTTGTTAATA	7.7
6:98061195-98061396	site	dyads_test_vs_ctrl_m4	D	-29	-2	GTTCATCTTTCTATATATCTCCCCAAAA	9.7
6:113153052-113153253	site	dyads_test_vs_ctrl_m4	R	-46	-19	TTACATACGTTTTATATAATATACAAAG	9.7
6:142970384-142970585	site	dyads_test_vs_ctrl_m4	D	73	100	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
7:25792624-25792825	site	dyads_test_vs_ctrl_m4	D	63	90	TAACTGAATAGCTTCATATTTTCTAAGT	8.0
7:36118675-36118876	site	dyads_test_vs_ctrl_m4	R	-14	13	CTGGGATATCTTTTTCTTCTGTGCAACC	7.7
7:59276223-59276424	site	dyads_test_vs_ctrl_m4	R	-63	-36	GTGGAGATTACTATTCTCCATTACAATA	10.3
7:90208138-90208339	site	dyads_test_vs_ctrl_m4	D	-45	-18	TCACAGTATGTTTGATTTTTATCCACAA	8.6
7:96202699-96202900	site	dyads_test_vs_ctrl_m4	D	2	29	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
7:96202699-96202900	site	dyads_test_vs_ctrl_m4	R	58	85	GCGCAGTTTTTTTTTCTTGTCTATAAAG	10.3
7:99090278-99090479	site	dyads_test_vs_ctrl_m4	R	61	88	ATGTAGGTTTTCATTTTTCTTTTATAAC	9.9
7:111072120-111072321	site	dyads_test_vs_ctrl_m4	D	32	59	TTACAGTTAAGAATTTTTCTGTAACAAC	7.6
7:123194182-123194383	site	dyads_test_vs_ctrl_m4	R	-99	-72	TTACAGTATGCATAGTTACTGATCTCGG	7.6
8:61121319-61121520	site	dyads_test_vs_ctrl_m4	R	-81	-54	GTGAAAATTATTTAACTACTATTTAGTA	8.7
8:61363928-61364129	site	dyads_test_vs_ctrl_m4	D	2	29	TCGCTTTTCCCCATATTTCTTTGTAAAC	8.5
8:81195096-81195297	site	dyads_test_vs_ctrl_m4	D	66	93	TATAAGAGTACTAGTTTTCATTTAAATT	7.7
8:89146331-89146532	site	dyads_test_vs_ctrl_m4	R	17	44	TATTTACATTTTATATTTTTGTACATAT	7.6
8:102633596-102633797	site	dyads_test_vs_ctrl_m4	R	-81	-54	TTTAAAGTTCTTATTTTAGTATACATAC	8.3
8:126981352-126981553	site	dyads_test_vs_ctrl_m4	D	45	72	TTACATTTCAATTTTTTTCTTTAAAAGG	8.6
9:3022432-3022633	site	dyads_test_vs_ctrl_m4	D	-85	-58	TCAATGATTTTCATTTTTCTTGCCATAT	7.6
9:47466142-47466343	site	dyads_test_vs_ctrl_m4	R	28	55	TCACTGTATTTTTTTTTCCTCACCAATC	7.7
9:81677768-81677969	site	dyads_test_vs_ctrl_m4	R	-65	-38	TGTTATATTTTTGTTCTACTTTCAAAAT	8.9
9:81677768-81677969	site	dyads_test_vs_ctrl_m4	R	-57	-30	GCGGAGTTTGTTATATTTTTGTTCTACT	9.1
9:88479724-88479925	site	dyads_test_vs_ctrl_m4	D	-79	-52	AAAAATATTTTTTTAATTCTTTCTACAC	9.3
9:100957175-100957376	site	dyads_test_vs_ctrl_m4	R	21	48	TATTTGAATCTCACTATTCTATAGAAAA	7.9
X:3084861-3085062	site	dyads_test_vs_ctrl_m4	D	-71	-44	CTGTATATTGCTTTTATTATGTTTAGGT	8.4
X:13156341-13156542	site	dyads_test_vs_ctrl_m4	D	60	87	ATGCATATATACTTTTTTATGAACGAAT	8.7
X:20272752-20272953	site	dyads_test_vs_ctrl_m4	R	-51	-24	CATTGGCTTTCTTTATTTCTCTACATAT	8.1
X:32254213-32254414	site	dyads_test_vs_ctrl_m4	R	-21	6	TAAAATATTGCTATACTAAATTATAAAA	7.8
X:38183283-38183484	site	dyads_test_vs_ctrl_m4	R	-7	20	TACAAAAAGTTTTTTTTTCTTTTAAATA	8.5
X:51004277-51004478	site	dyads_test_vs_ctrl_m4	D	-86	-59	ATACAGATATCTATTTTATTAAAAAAGT	9.0
X:56155758-56155959	site	dyads_test_vs_ctrl_m4	R	-52	-25	TAGAATTAGGGTCGATTTCTCTATAACA	7.5
X:61785809-61786010	site	dyads_test_vs_ctrl_m4	R	-51	-24	ACTCAGTAGTCCATATTGCTATCTCATC	7.7
X:96485266-96485467	site	dyads_test_vs_ctrl_m4	R	16	43	CTGGGATATCTTTTTCTTCTGTGCAACC	7.7
X:146176106-146176307	site	dyads_test_vs_ctrl_m4	R	-57	-30	ATGTAGGTTTTCATTTCTCTTTCATAAC	7.7
;
; Matrices
;	matrix	name                 	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	dyads_test_vs_ctrl_m4	28	4	0	-24.600	17.500	42.100	a:0.270 c:0.231 g:0.232 t:0.267 
; Number of sequences scanned	2996
; Sum of sequence lengths	602196
; N residues           	0
; Matches per matrix
;	matrix	name                 	matches	scored
;	1	dyads_test_vs_ctrl_m4	215	0
;		TOTAL          	215	0
; Host name	rsat
; Job started	2025-09-18.095857
; Job done	2025-09-18.095857
; Seconds	0.26
;	user	0.26
;	system	0.02
;	cuser	0.08
;	csystem	0.01
