; pattern-assembly  -v 1 -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/dyads_test_vs_ctrl/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/dyads_test_vs_ctrl/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/dyads_test_vs_ctrl/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/dyads_test_vs_ctrl/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	20
; Top number of patterns       	100
; Number of input patterns     	8
;

; assembly # 1	seed: tcannnnnnnnnnnnnnnnnnncca	6 assembled patterns	length 25
;                  alignt	                  rev_cpl	score
tcannnnnnnnnnnnnnnnnnncca	tggnnnnnnnnnnnnnnnnnnntga	0.78
..agtnnnnnnnnnttc........	........gaannnnnnnnnact..	0.74
..aagnnncta..............	..............tagnnnctt..	0.17
..agcnnnnnnnnnnnnnntcc...	...ggannnnnnnnnnnnnngct..	0.16
...gaannnnnnnnnact.......	.......agtnnnnnnnnnttc...	0.74
...tagnnnctt.............	.............aagnnncta...	0.17
tcannnnnnnnnnnnnnnnnnncca	tggnnnnnnnnnnnnnnnnnnntga	0.78	best consensus

; assembly # 2	seed: tccnnnnnnnnnnnnnnnnaaa	5 assembled patterns	length 22
;               alignt	               rev_cpl	score
tccnnnnnnnnnnnnnnnnaaa	tttnnnnnnnnnnnnnnnngga	0.41
...gaannnnnnnnnact....	....agtnnnnnnnnnttc...	0.74
...agtnnnnnnnnnttc....	....gaannnnnnnnnact...	0.74
...tagnnnctt..........	..........aagnnncta...	0.17
...aagnnncta..........	..........tagnnnctt...	0.17
tccnnnnnnnnnnnnnnnnaaa	tttnnnnnnnnnnnnnnnngga	0.74	best consensus

; assembly # 3	seed: ccannnnnnnnnnnnnnnnnnnnaac	10 assembled patterns	length 26
;                   alignt	                   rev_cpl	score
ccannnnnnnnnnnnnnnnnnnnaac	gttnnnnnnnnnnnnnnnnnnnntgg	0.36
..agtnnnnnnnnnttc.........	.........gaannnnnnnnnact..	0.74
..aagnnncta...............	...............tagnnnctt..	0.17
..agcnnnnnnnnnnnnnntcc....	....ggannnnnnnnnnnnnngct..	0.16
...gaannnnnnnnnact........	........agtnnnnnnnnnttc...	0.74
...tccnnnnnnnnnnnnnnnnaaa.	.tttnnnnnnnnnnnnnnnngga...	0.41
...ttgnnnnnnnnnnnnnnaag...	...cttnnnnnnnnnnnnnncaa...	0.30
...cttnnnnnnnnnnnnnncaa...	...ttgnnnnnnnnnnnnnnaag...	0.30
...tagnnnctt..............	..............aagnnncta...	0.17
...ggannnnnnnnnnnnnngct...	...agcnnnnnnnnnnnnnntcc...	0.16
ccannnnnnnnnnnnnnnnnnnnaac	gttnnnnnnnnnnnnnnnnnnnntgg	0.74	best consensus

; assembly # 4	seed: gcannnnnnnnnnnnnnnnnncaa	7 assembled patterns	length 24
;                 alignt	                 rev_cpl	score
gcannnnnnnnnnnnnnnnnncaa	ttgnnnnnnnnnnnnnnnnnntgc	0.13
..agtnnnnnnnnnttc.......	.......gaannnnnnnnnact..	0.74
..aagnnncta.............	.............tagnnnctt..	0.17
..agcnnnnnnnnnnnnnntcc..	..ggannnnnnnnnnnnnngct..	0.16
...gaannnnnnnnnact......	......agtnnnnnnnnnttc...	0.74
...tagnnnctt............	............aagnnncta...	0.17
....cttnnnnnnnnnnnnnncaa	ttgnnnnnnnnnnnnnnaag....	0.30
gcannnnnnnnnnnnnnnnnncaa	ttgnnnnnnnnnnnnnnnnnntgc	0.74	best consensus
; Host name	rsat
; Job started	2025-09-18.095838
; Job done	2025-09-18.095838
; Seconds	0.38
;	user	0.38
;	system	0
;	cuser	0
;	csystem	0
