/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title IpnullvsNT -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	2996
	Sum of sequence lengths      	602196
	Min sequence length          	0
	Max sequence length          	201
	Average sequence length      	201
	Possible positions           	599200
 Oligonucleotide statistics:
	Total occurrences    	466353
 Position interval parameters:
	Position interval    	20
	Number of windows    	11
	Total positions      	599200
	Degrees of freedom   	10
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-6	[-119,-100]	-109.5	2996	2996
	2	-5	[-99,-80]	-89.5	2996	59920
	3	-4	[-79,-60]	-69.5	2996	59920
	4	-3	[-59,-40]	-49.5	2996	59920
	5	-2	[-39,-20]	-29.5	2996	59920
	6	-1	[-19,0]	-9.5	2996	59920
	7	0	[1,20]	10.5	2996	59920
	8	1	[21,40]	30.5	2996	59920
	9	2	[41,60]	50.5	2996	59920
	10	3	[61,80]	70.5	2996	59920
	11	4	[81,100]	90.5	2996	56924

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-109.5         	occurrences in window	1	[-119,-100]
	11	-89.5          	occurrences in window	2	[-99,-80]
	12	-69.5          	occurrences in window	3	[-79,-60]
	13	-49.5          	occurrences in window	4	[-59,-40]
	14	-29.5          	occurrences in window	5	[-39,-20]
	15	-9.5           	occurrences in window	6	[-19,0]
	16	10.5           	occurrences in window	7	[1,20]
	17	30.5           	occurrences in window	8	[21,40]
	18	50.5           	occurrences in window	9	[41,60]
	19	70.5           	occurrences in window	10	[61,80]
	20	90.5           	occurrences in window	11	[81,100]
seq id occ chi2 df Pval Eval sig rank -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5
gg gg 27988 58.1 10 8.3e-09 1.3e-07 6.88 1 164 2991 2824 2792 2669 2891 2663 2679 2632 2888 2795
ta ta 22291 54.6 10 3.8e-08 6.1e-07 6.21 2 130 2388 2343 2268 2251 2061 2076 2144 2197 2201 2232
aa aa 38487 51.0 10 1.8e-07 2.8e-06 5.55 3 198 3931 3853 3857 3739 3695 3669 3871 3868 3814 3992
tt tt 37537 47.2 10 8.8e-07 1.4e-05 4.85 4 224 4052 3809 3726 3676 3541 3693 3772 3705 3766 3573
ac ac 24627 42.6 10 5.8e-06 9.4e-05 4.03 5 143 2600 2414 2417 2370 2274 2476 2475 2477 2476 2505
cc cc 27573 40.7 10 1.3e-05 0.00021 3.69 6 152 2929 2649 2637 2728 2617 2739 2723 2782 2891 2726
tg tg 35777 38.3 10 3.4e-05 0.00054 3.27 7 193 3849 3605 3534 3552 3652 3498 3442 3438 3545 3469
gc gc 25961 30.2 10 7.9e-04 0.013 1.90 8 150 2702 2660 2499 2508 2637 2562 2563 2456 2659 2565
cg cg 10949 28.8 10 1.3e-03 0.021 1.67 9 65 1142 1154 1022 1047 1014 1102 1100 1056 1180 1067
ct ct 33259 28.6 10 1.4e-03 0.023 1.64 10 179 3497 3378 3294 3197 3245 3279 3242 3287 3349 3312
gt gt 24524 26.8 10 2.8e-03 0.045 1.34 11 137 2614 2468 2485 2476 2401 2405 2319 2369 2460 2390
ag ag 33316 25.6 10 4.4e-03 0.07 1.15 12 157 3380 3349 3317 3306 3343 3125 3312 3303 3381 3343
at at 29553 21.3 10 1.9e-02 0.31 0.51 13 144 3075 3069 2943 2980 2885 2890 2829 2945 2905 2888
ga ga 29584 20.4 10 2.6e-02 0.41 0.39 14 173 3061 2974 2915 2902 2938 2817 2942 2952 3008 2902
tc tc 29264 17.8 10 5.9e-02 0.94 0.03 15 119 2968 2921 2918 2878 2853 2958 2814 2995 2989 2851
ca ca 35663 17.7 10 6.1e-02 0.97 0.01 16 180 3625 3483 3465 3545 3522 3594 3492 3613 3584 3560 
 Host name	rsat
 Job started	2025-09-18.095800
 Job done	2025-09-18.095803
 Seconds	3.39
	user	3.39
	system	0.01
	cuser	0
;	csystem	0