One-to-n alignments
Command: compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.095753_2025-09-18.095753_7F5dVY/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
One-to-n matrix alignment; reference matrix: dyads_test_vs_ctrl_m3_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_test_vs_ctrl_m3_shift0 (dyads_test_vs_ctrl_m3) |
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; dyads_test_vs_ctrl_m3; m=0 (reference); ncol1=30; shift=0; ncol=30; mwcCAkwwwtcywtwtTwCTktmmrAAcww
; Alignment reference
a 172 162 136 90 521 69 224 238 190 139 153 67 234 98 161 148 64 244 63 52 152 86 266 300 273 426 438 84 214 202
c 162 109 332 427 23 102 147 143 132 151 257 256 64 85 139 154 37 37 462 46 126 85 182 174 55 48 65 376 103 140
g 138 132 70 42 41 254 62 83 137 142 69 29 82 99 121 139 37 23 36 28 160 71 129 50 172 65 53 70 105 116
t 151 220 85 64 38 198 190 159 164 191 144 271 243 341 202 182 485 319 62 497 185 381 46 99 123 84 67 93 201 165
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| dyads_test_vs_ctrl_m3_shift0 (dyads_test_vs_ctrl_m3) |
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; dyads_test_vs_ctrl_m3 versus dyads_test_vs_ctrl_m3; m=1/2; ncol2=30; w=0; offset=0; strand=D; shift=0; score= 1; mwcCAkwwwtcywtwtTwCTktmmrAAcww
; cor=; Ncor=
a 172 162 136 90 521 69 224 238 190 139 153 67 234 98 161 148 64 244 63 52 152 86 266 300 273 426 438 84 214 202
c 162 109 332 427 23 102 147 143 132 151 257 256 64 85 139 154 37 37 462 46 126 85 182 174 55 48 65 376 103 140
g 138 132 70 42 41 254 62 83 137 142 69 29 82 99 121 139 37 23 36 28 160 71 129 50 172 65 53 70 105 116
t 151 220 85 64 38 198 190 159 164 191 144 271 243 341 202 182 485 319 62 497 185 381 46 99 123 84 67 93 201 165
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| dyads_test_vs_ctrl_m4_shift0 (dyads_test_vs_ctrl_m4) |
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; dyads_test_vs_ctrl_m3 versus dyads_test_vs_ctrl_m4; m=2/2; ncol2=28; w=0; offset=0; strand=D; shift=0; score=0.75581; wtgcAgwwttyywtwwTwCTttmcaaww--
; cor=; Ncor=
a 198 166 165 142 552 137 260 338 84 168 123 78 256 101 190 181 64 257 57 54 157 106 184 101 457 457 221 206 0 0
c 151 143 102 299 27 25 109 37 75 160 282 261 59 81 127 150 34 28 502 36 135 84 276 404 84 60 127 150 0 0
g 137 104 289 85 34 362 65 72 87 134 95 42 61 77 115 128 25 16 47 19 153 80 85 59 58 58 142 151 0 0
t 192 265 122 152 65 154 244 231 432 216 178 297 302 419 246 219 555 377 72 569 233 408 133 114 79 103 188 171 0 0
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One-to-n matrix alignment; reference matrix: dyads_test_vs_ctrl_m4_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_test_vs_ctrl_m4_shift0 (dyads_test_vs_ctrl_m4) |
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; dyads_test_vs_ctrl_m4; m=0 (reference); ncol1=28; shift=0; ncol=28; wtgcAgwwttyywtwwTwCTttmcaaww
; Alignment reference
a 198 166 165 142 552 137 260 338 84 168 123 78 256 101 190 181 64 257 57 54 157 106 184 101 457 457 221 206
c 151 143 102 299 27 25 109 37 75 160 282 261 59 81 127 150 34 28 502 36 135 84 276 404 84 60 127 150
g 137 104 289 85 34 362 65 72 87 134 95 42 61 77 115 128 25 16 47 19 153 80 85 59 58 58 142 151
t 192 265 122 152 65 154 244 231 432 216 178 297 302 419 246 219 555 377 72 569 233 408 133 114 79 103 188 171
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| dyads_test_vs_ctrl_m4_shift0 (dyads_test_vs_ctrl_m4) |
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; dyads_test_vs_ctrl_m4 versus dyads_test_vs_ctrl_m4; m=1/2; ncol2=28; w=0; offset=0; strand=D; shift=0; score= 1; wtgcAgwwttyywtwwTwCTttmcaaww
; cor=; Ncor=
a 198 166 165 142 552 137 260 338 84 168 123 78 256 101 190 181 64 257 57 54 157 106 184 101 457 457 221 206
c 151 143 102 299 27 25 109 37 75 160 282 261 59 81 127 150 34 28 502 36 135 84 276 404 84 60 127 150
g 137 104 289 85 34 362 65 72 87 134 95 42 61 77 115 128 25 16 47 19 153 80 85 59 58 58 142 151
t 192 265 122 152 65 154 244 231 432 216 178 297 302 419 246 219 555 377 72 569 233 408 133 114 79 103 188 171
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| dyads_test_vs_ctrl_m3_shift0 (dyads_test_vs_ctrl_m3) |
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; dyads_test_vs_ctrl_m4 versus dyads_test_vs_ctrl_m3; m=2/2; ncol2=30; w=0; offset=0; strand=D; shift=0; score=0.75581; mwcCAkwwwtcywtwtTwCTktmmrAAc
; cor=; Ncor=
a 172 162 136 90 521 69 224 238 190 139 153 67 234 98 161 148 64 244 63 52 152 86 266 300 273 426 438 84
c 162 109 332 427 23 102 147 143 132 151 257 256 64 85 139 154 37 37 462 46 126 85 182 174 55 48 65 376
g 138 132 70 42 41 254 62 83 137 142 69 29 82 99 121 139 37 23 36 28 160 71 129 50 172 65 53 70
t 151 220 85 64 38 198 190 159 164 191 144 271 243 341 202 182 485 319 62 497 185 381 46 99 123 84 67 93
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One-to-n matrix alignment; reference matrix: dyads_test_vs_ctrl_m1_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_test_vs_ctrl_m1_shift0 (dyads_test_vs_ctrl_m1) |
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; dyads_test_vs_ctrl_m1; m=0 (reference); ncol1=29; shift=0; ncol=29; wwTCAgwrayyywttyTwcTwtyyCCAth
; Alignment reference
a 94 83 44 26 247 74 134 204 113 74 50 44 103 56 72 59 36 134 35 28 88 37 64 62 38 32 263 66 104
c 76 75 32 244 28 12 39 15 69 86 153 89 34 56 80 87 17 6 215 37 70 43 143 129 239 249 18 78 82
g 53 55 18 29 10 173 28 82 68 51 39 28 27 59 80 77 22 14 15 10 63 32 34 44 21 10 18 77 56
t 101 111 230 25 39 65 123 23 74 113 82 163 160 153 92 101 249 170 59 249 103 212 83 89 26 33 25 103 82
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| dyads_test_vs_ctrl_m1_shift0 (dyads_test_vs_ctrl_m1) |
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; dyads_test_vs_ctrl_m1 versus dyads_test_vs_ctrl_m1; m=1/1; ncol2=29; w=0; offset=0; strand=D; shift=0; score= 1; wwTCAgwrayyywttyTwcTwtyyCCAth
; cor=; Ncor=
a 94 83 44 26 247 74 134 204 113 74 50 44 103 56 72 59 36 134 35 28 88 37 64 62 38 32 263 66 104
c 76 75 32 244 28 12 39 15 69 86 153 89 34 56 80 87 17 6 215 37 70 43 143 129 239 249 18 78 82
g 53 55 18 29 10 173 28 82 68 51 39 28 27 59 80 77 22 14 15 10 63 32 34 44 21 10 18 77 56
t 101 111 230 25 39 65 123 23 74 113 82 163 160 153 92 101 249 170 59 249 103 212 83 89 26 33 25 103 82
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One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m1_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
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| oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1) |
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; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=11; shift=0; ncol=11; dwGAAACTAyw
; Alignment reference
a 257 298 89 793 780 759 98 20 809 193 301
c 173 133 41 33 42 28 691 22 17 246 162
g 220 196 697 26 36 47 44 22 26 147 126
t 230 253 53 28 22 46 47 816 28 294 291
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| oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1) |
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; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; dwGAAACTAyw
; cor=; Ncor=
a 257 298 89 793 780 759 98 20 809 193 301
c 173 133 41 33 42 28 691 22 17 246 162
g 220 196 697 26 36 47 44 22 26 147 126
t 230 253 53 28 22 46 47 816 28 294 291
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One-to-n matrix alignment; reference matrix: dyads_test_vs_ctrl_m2_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
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| dyads_test_vs_ctrl_m2_shift0 (dyads_test_vs_ctrl_m2) |
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; dyads_test_vs_ctrl_m2; m=0 (reference); ncol1=26; shift=0; ncol=26; wwTcCrrwwwwctwwwwwyywAAAww
; Alignment reference
a 170 190 48 92 66 333 272 265 187 190 203 118 97 233 183 194 160 275 24 30 193 461 451 493 192 194
c 130 130 39 400 430 13 17 18 116 150 115 286 90 45 131 125 134 10 257 242 139 55 55 28 131 131
g 110 119 40 57 40 160 310 60 133 119 97 84 56 54 122 123 123 15 16 9 104 40 46 43 119 114
t 208 179 491 69 82 112 19 275 182 159 203 130 375 286 182 176 201 318 321 337 182 62 66 54 176 179
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| dyads_test_vs_ctrl_m2_shift0 (dyads_test_vs_ctrl_m2) |
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; dyads_test_vs_ctrl_m2 versus dyads_test_vs_ctrl_m2; m=1/1; ncol2=26; w=0; offset=0; strand=D; shift=0; score= 1; wwTcCrrwwwwctwwwwwyywAAAww
; cor=; Ncor=
a 170 190 48 92 66 333 272 265 187 190 203 118 97 233 183 194 160 275 24 30 193 461 451 493 192 194
c 130 130 39 400 430 13 17 18 116 150 115 286 90 45 131 125 134 10 257 242 139 55 55 28 131 131
g 110 119 40 57 40 160 310 60 133 119 97 84 56 54 122 123 123 15 16 9 104 40 46 43 119 114
t 208 179 491 69 82 112 19 275 182 159 203 130 375 286 182 176 201 318 321 337 182 62 66 54 176 179
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One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m1_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
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| oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1) |
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; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=10; shift=0; ncol=10; abATGGAGrw
; Alignment reference
a 234 149 688 1 7 2 640 4 229 221
c 143 183 0 30 18 0 56 17 144 130
g 151 179 13 1 674 681 1 670 178 169
t 173 190 0 669 2 18 4 10 150 181
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| oligos_6nt_test_vs_ctrl_m1_shift0 (oligos_6nt_test_vs_ctrl_m1) |
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; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/1; ncol2=10; w=0; offset=0; strand=D; shift=0; score= 1; abATGGAGrw
; cor=; Ncor=
a 234 149 688 1 7 2 640 4 229 221
c 143 183 0 30 18 0 56 17 144 130
g 151 179 13 1 674 681 1 670 178 169
t 173 190 0 669 2 18 4 10 150 181
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One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m2_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2) |
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; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=11; shift=0; ncol=11; wwCTCACAAwm
; Alignment reference
a 154 198 33 52 41 574 10 530 528 167 208
c 147 122 549 15 514 4 536 34 39 144 160
g 144 122 15 8 9 22 14 14 23 111 106
t 170 173 18 540 51 15 55 37 25 193 141
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| oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2) |
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; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; wwCTCACAAwm
; cor=; Ncor=
a 154 198 33 52 41 574 10 530 528 167 208
c 147 122 549 15 514 4 536 34 39 144 160
g 144 122 15 8 9 22 14 14 23 111 106
t 170 173 18 540 51 15 55 37 25 193 141
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One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m3_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
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| oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3) |
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; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=11; shift=0; ncol=11; dwGACTCTCwk
; Alignment reference
a 207 208 26 619 20 40 24 40 37 192 169
c 144 135 29 41 658 42 630 32 627 163 173
g 188 177 620 21 23 15 52 30 27 134 191
t 186 205 50 44 24 628 19 623 34 236 192
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| oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3) |
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; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; dwGACTCTCwk
; cor=; Ncor=
a 207 208 26 619 20 40 24 40 37 192 169
c 144 135 29 41 658 42 630 32 627 163 173
g 188 177 620 21 23 15 52 30 27 134 191
t 186 205 50 44 24 628 19 623 34 236 192
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One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m4_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
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| oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4) |
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; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=11; shift=0; ncol=11; wyATTCATGww
; Alignment reference
a 333 238 906 36 80 88 912 29 64 310 279
c 141 253 22 32 66 790 40 22 29 171 247
g 229 132 49 32 24 59 19 21 850 199 196
t 299 379 25 902 832 65 31 930 59 322 280
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| oligos_7nt_test_vs_ctrl_m4_shift0 (oligos_7nt_test_vs_ctrl_m4) |
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; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; wyATTCATGww
; cor=; Ncor=
a 333 238 906 36 80 88 912 29 64 310 279
c 141 253 22 32 66 790 40 22 29 171 247
g 229 132 49 32 24 59 19 21 850 199 196
t 299 379 25 902 832 65 31 930 59 322 280
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