/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.101200_2025-09-18.101200_0x9V1g/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.101200_2025-09-18.101200_0x9V1g/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title MEKvsNT -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.101200_2025-09-18.101200_0x9V1g/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.101200_2025-09-18.101200_0x9V1g/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.101200_2025-09-18.101200_0x9V1g/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	2391
	Sum of sequence lengths      	480591
	Min sequence length          	0
	Max sequence length          	201
	Average sequence length      	201
	Possible positions           	478200
 Oligonucleotide statistics:
	Total occurrences    	353624
 Position interval parameters:
	Position interval    	20
	Number of windows    	11
	Total positions      	478200
	Degrees of freedom   	10
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-6	[-119,-100]	-109.5	2391	2391
	2	-5	[-99,-80]	-89.5	2391	47820
	3	-4	[-79,-60]	-69.5	2391	47820
	4	-3	[-59,-40]	-49.5	2391	47820
	5	-2	[-39,-20]	-29.5	2391	47820
	6	-1	[-19,0]	-9.5	2391	47820
	7	0	[1,20]	10.5	2391	47820
	8	1	[21,40]	30.5	2391	47820
	9	2	[41,60]	50.5	2391	47820
	10	3	[61,80]	70.5	2391	47820
	11	4	[81,100]	90.5	2391	45429

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-109.5         	occurrences in window	1	[-119,-100]
	11	-89.5          	occurrences in window	2	[-99,-80]
	12	-69.5          	occurrences in window	3	[-79,-60]
	13	-49.5          	occurrences in window	4	[-59,-40]
	14	-29.5          	occurrences in window	5	[-39,-20]
	15	-9.5           	occurrences in window	6	[-19,0]
	16	10.5           	occurrences in window	7	[1,20]
	17	30.5           	occurrences in window	8	[21,40]
	18	50.5           	occurrences in window	9	[41,60]
	19	70.5           	occurrences in window	10	[61,80]
	20	90.5           	occurrences in window	11	[81,100]
seq id occ chi2 df Pval Eval sig rank -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5
gg gg 21267 77.1 10 1.8e-12 3e-11 10.53 1 113 2375 2177 2146 2003 2238 1942 1968 2064 2136 2105
tt tt 27908 74.5 10 6.0e-12 9.7e-11 10.02 2 158 3110 2770 2711 2694 2587 2728 2795 2687 2891 2777
aa aa 28557 64.7 10 4.6e-10 7.4e-09 8.13 3 158 2981 2933 2796 2804 2698 2657 2800 2813 2934 2983
ta ta 16245 55.8 10 2.3e-08 3.7e-07 6.44 4 92 1807 1651 1589 1598 1449 1581 1577 1568 1701 1632
tg tg 27034 43.8 10 3.5e-06 5.7e-05 4.25 5 159 2979 2731 2655 2647 2696 2582 2637 2653 2678 2617
cc cc 21506 43.4 10 4.2e-06 6.8e-05 4.17 6 121 2238 2245 2071 2134 2078 1995 2149 2121 2127 2227
gc gc 19837 35.8 10 9.1e-05 0.0015 2.84 7 114 2102 1993 2038 1872 2011 1919 1911 1873 2003 2001
ac ac 18827 35.6 10 9.9e-05 0.0016 2.80 8 104 2001 1935 1788 1834 1723 1913 1897 1854 1895 1883
ga ga 22491 35.2 10 1.2e-04 0.0019 2.73 9 140 2419 2242 2213 2201 2245 2143 2131 2271 2285 2201
gt gt 18513 33.0 10 2.7e-04 0.0043 2.36 10 90 2043 1906 1793 1872 1735 1810 1805 1846 1853 1760
ag ag 25298 31.8 10 4.4e-04 0.007 2.16 11 141 2678 2529 2504 2470 2528 2434 2414 2494 2546 2560
ct ct 25304 30.9 10 6.1e-04 0.0098 2.01 12 141 2680 2548 2439 2443 2472 2449 2450 2563 2636 2483
ca ca 27494 27.6 10 2.1e-03 0.033 1.48 13 139 2782 2806 2706 2651 2643 2851 2772 2666 2701 2777
at at 22119 23.9 10 7.9e-03 0.13 0.90 14 130 2349 2238 2202 2153 2093 2220 2169 2173 2225 2167
cg cg 8543 19.5 10 3.4e-02 0.54 0.27 15 48 916 865 886 791 848 790 832 859 848 860
tc tc 22681 11.1 10 3.5e-01 5.6 -0.75 16 111 2295 2257 2221 2204 2191 2296 2242 2337 2312 2215 
 Host name	rsat
 Job started	2025-09-18.101208
 Job done	2025-09-18.101210
 Seconds	2.64
	user	2.64
	system	0.01
	cuser	0
;	csystem	0