/var/www/html/rsat/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.155730_2025-09-18.155730_PhUuvq/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.155730_2025-09-18.155730_PhUuvq/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title T15_2 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.155730_2025-09-18.155730_PhUuvq/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.155730_2025-09-18.155730_PhUuvq/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.155730_2025-09-18.155730_PhUuvq/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	3039
	Sum of sequence lengths      	610839
	Min sequence length          	0
	Max sequence length          	201
	Average sequence length      	201
	Possible positions           	607800
 Oligonucleotide statistics:
	Total occurrences    	473103
 Position interval parameters:
	Position interval    	20
	Number of windows    	11
	Total positions      	607800
	Degrees of freedom   	10
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-6	[-119,-100]	-109.5	3039	3039
	2	-5	[-99,-80]	-89.5	3039	60780
	3	-4	[-79,-60]	-69.5	3039	60780
	4	-3	[-59,-40]	-49.5	3039	60780
	5	-2	[-39,-20]	-29.5	3039	60780
	6	-1	[-19,0]	-9.5	3039	60780
	7	0	[1,20]	10.5	3039	60780
	8	1	[21,40]	30.5	3039	60780
	9	2	[41,60]	50.5	3039	60780
	10	3	[61,80]	70.5	3039	60780
	11	4	[81,100]	90.5	3039	57741

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-109.5         	occurrences in window	1	[-119,-100]
	11	-89.5          	occurrences in window	2	[-99,-80]
	12	-69.5          	occurrences in window	3	[-79,-60]
	13	-49.5          	occurrences in window	4	[-59,-40]
	14	-29.5          	occurrences in window	5	[-39,-20]
	15	-9.5           	occurrences in window	6	[-19,0]
	16	10.5           	occurrences in window	7	[1,20]
	17	30.5           	occurrences in window	8	[21,40]
	18	50.5           	occurrences in window	9	[41,60]
	19	70.5           	occurrences in window	10	[61,80]
	20	90.5           	occurrences in window	11	[81,100]
seq id occ chi2 df Pval Eval sig rank -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5
gg gg 25633 57.2 10 1.2e-08 2e-07 6.70 1 153 2686 2584 2533 2651 2581 2315 2469 2458 2611 2592
tt tt 42220 41.0 10 1.1e-05 0.00018 3.75 2 220 4522 4193 4155 4028 4166 4240 4208 4313 4082 4093
ct ct 32995 38.8 10 2.7e-05 0.00044 3.36 3 191 3511 3349 3195 3116 3263 3333 3323 3187 3311 3216
aa aa 42347 38.3 10 3.4e-05 0.00054 3.27 4 242 4411 4170 4265 4141 4166 4210 4096 4097 4308 4241
ac ac 24595 37.7 10 4.3e-05 0.0007 3.16 5 138 2571 2556 2355 2332 2362 2442 2498 2423 2426 2492
cc cc 25635 33.1 10 2.6e-04 0.0042 2.38 6 157 2713 2540 2524 2501 2466 2569 2495 2507 2583 2580
ta ta 26249 31.0 10 5.8e-04 0.0092 2.03 7 142 2714 2656 2610 2544 2399 2613 2652 2684 2661 2574
tc tc 29658 28.2 10 1.7e-03 0.027 1.57 8 181 3092 2985 2849 2850 2932 3006 2973 2882 3008 2900
ag ag 32797 27.3 10 2.3e-03 0.038 1.43 9 162 3373 3333 3282 3267 3232 3069 3215 3245 3393 3226
tg tg 35183 26.6 10 3.1e-03 0.049 1.31 10 186 3722 3582 3570 3525 3518 3376 3412 3490 3422 3380
ca ca 35391 26.4 10 3.3e-03 0.053 1.28 11 171 3687 3599 3426 3526 3504 3526 3459 3466 3477 3550
ga ga 29259 25.8 10 4.0e-03 0.063 1.20 12 148 3015 2978 2899 2838 2935 2726 2896 2949 3002 2873
gc gc 23600 24.4 10 6.7e-03 0.11 0.97 13 132 2482 2332 2363 2406 2338 2322 2335 2210 2339 2341
gt gt 24594 24.3 10 6.8e-03 0.11 0.97 14 135 2592 2532 2489 2511 2394 2330 2366 2438 2453 2354
cg cg 9475 17.7 10 6.0e-02 0.96 0.02 15 60 987 952 917 958 890 913 962 904 972 960
at at 33472 14.2 10 1.6e-01 2.6 -0.42 16 160 3422 3380 3286 3324 3227 3335 3293 3439 3332 3274 
 Host name	rsat
 Job started	2025-09-18.155737
 Job done	2025-09-18.155741
 Seconds	3.29
	user	3.29
	system	0.01
	cuser	0.01
;	csystem	0