RSAT - peak-motifs result

Analysis: T15_2 (18/09/2025 15:58)

peak-motifs  -v 1 -title T15_2 -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.155730_2025-09-18.155730_PhUuvq/peak-motifspeak_seq -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.155730_2025-09-18.155730_PhUuvq

motif discovery
oligos_6nt_mkv3	oligos_6nt_mkv3_m1 assembly: gccgccgc (sig=13.92; e-value=1.2e-14) RC: gcggcggc oligos_6nt_mkv3_m2 assembly: aagaaac (sig=8.31; e-value=4.9e-09) RC: gtttctt oligos_6nt_mkv3_m3 assembly: cgagcga (sig=6.39; e-value=4.1e-07) RC: tcgctcg oligos_6nt_mkv3_m4 assembly: tacatac (sig=6.20; e-value=6.3e-07) RC: gtatgta oligos_6nt_mkv3_m5 assembly: ccggcggcgc (sig=13.92; e-value=1.2e-14) RC: gcgccgccgg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv4	oligos_7nt_mkv4_m1 assembly: aaacaaaacc (sig=4.12; e-value=7.6e-05) RC: ggttttgttt oligos_7nt_mkv4_m2 assembly: cggctgc (sig=1.70; e-value=0.02) RC: gcagccg oligos_7nt_mkv4_m3 assembly: cgagcgc (sig=1.61; e-value=0.025) RC: gcgctcg oligos_7nt_mkv4_m4 assembly: aaccaaa (sig=1.58; e-value=0.026) RC: tttggtt oligos_7nt_mkv4_m5 assembly: ccacctc (sig=1.50; e-value=0.032) RC: gaggtgg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv3_m1	k-mer sig=13.92; evalue=1.2e-14 ssGCCGCCGCss SSGCGGCGGCSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 226 (7.44%) Max nb of predicted sites per peak: 55  (4:129820372-129820573) Mean nb of predicted sites per peak: 4.29	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv3_m2	k-mer sig=8.31; evalue=4.9e-09 rrAAGAAAraa TTYTTTCTTYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 440 (14.48%) Max nb of predicted sites per peak: 30  (14:86648235-86648436) Mean nb of predicted sites per peak: 1.38	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv3_m3	k-mer sig=6.39; evalue=4.1e-07 ssCGAGCGass SSTCGCTCGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 170 (5.59%) Max nb of predicted sites per peak: 7  (11:109363040-109363241) Mean nb of predicted sites per peak: 1.55	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv3_m4	k-mer sig=6.20; evalue=6.3e-07 taTACATAcww WWGTATGTATA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 233 (7.67%) Max nb of predicted sites per peak: 18  (19:32822290-32822491) Mean nb of predicted sites per peak: 1.76	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv3_m5	k-mer sig=13.92; evalue=1.2e-14 sssCGGCGGCGCss SSGCGCCGCCGSSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 239 (7.86%) Max nb of predicted sites per peak: 62  (4:129820372-129820573) Mean nb of predicted sites per peak: 5.84	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv4_m1	k-mer sig=4.12; evalue=7.6e-05 aaAAACAAAACcaa TTGGTTTTGTTTTT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 215 (7.07%) Max nb of predicted sites per peak: 6  (11:24994902-24995103) Mean nb of predicted sites per peak: 1.30	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv4_m2	k-mer sig=1.70; evalue=0.02 ssCGGCTGCys SRGCAGCCGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 206 (6.78%) Max nb of predicted sites per peak: 27  (4:129820372-129820573) Mean nb of predicted sites per peak: 2.09	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv4_m3	k-mer sig=1.61; evalue=0.025 ssCGAGCGCss SSGCGCTCGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 193 (6.35%) Max nb of predicted sites per peak: 7  (11:109363040-109363241) Mean nb of predicted sites per peak: 1.63	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv4_m4	k-mer sig=1.58; evalue=0.026 awAACCAAAth DATTTGGTTWT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 126 (4.15%) Max nb of predicted sites per peak: 3  (7:41552292-41552493) Mean nb of predicted sites per peak: 1.10	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv4_m5	k-mer sig=1.50; evalue=0.032 ckCCACCTCcb VGGAGGTGGMG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 237 (7.80%) Max nb of predicted sites per peak: 9  (8:25640878-25641079) Mean nb of predicted sites per peak: 1.26	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title T15_2 -i $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.155730_2025-09-18.155730_PhUuvq/peak-motifspeak_seq -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/09/18/peak-motifs.2025-09-18.155730_2025-09-18.155730_PhUuvq

Warning: Not a single pattern was found in file tmp/www-data/2025/09/18/peak-motifs.2025-09-18.155730_2025-09-18.155730_PhUuvq/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/09/18/peak-motifs.2025-09-18.155730_2025-09-18.155730_PhUuvq/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab