RSAT - peak-motifs result

Analysis: Lesson_Exercise (28/10/2025 14:55)

peak-motifs  -v 1 -title Lesson_Exercise -i $RSAT/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145422_2025-10-28.145422_cIh8x5/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145422_2025-10-28.145422_cIh8x5

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: gacatgcccag (sig=14.99; e-value=1e-15) RC: ctgggcatgtc oligos_6nt_mkv2_m2 assembly: gacaagtc (sig=4.07; e-value=8.5e-05) RC: gacttgtc oligos_6nt_mkv2_m3 assembly: tccccgcc (sig=3.81; e-value=0.00015) RC: ggcgggga oligos_6nt_mkv2_m4 assembly: ccaggcatgtc (sig=14.99; e-value=1e-15) RC: gacatgcctgg oligos_6nt_mkv2_m5 assembly: gacatgtc (sig=6.59; e-value=2.6e-07) RC: gacatgtc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: ggacatgcccaggcatgtcc (sig=24.28; e-value=5.2e-25) RC: ggacatgcctgggcatgtcc oligos_7nt_mkv2_m2 assembly: gtccccgccg (sig=3.54; e-value=0.00029) RC: cggcggggac oligos_7nt_mkv2_m3 assembly: gacaagtct (sig=3.23; e-value=0.00059) RC: agacttgtc oligos_7nt_mkv2_m4 assembly: aacatgcccaggcatgtcca (sig=24.28; e-value=5.2e-25) RC: tggacatgcctgggcatgtt oligos_7nt_mkv2_m5 assembly: tgactca (sig=2.20; e-value=0.0063) RC: tgagtca	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=14.99; evalue=1e-15 trgACATGCCCAsrs SYSTGGGCATGTCYA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 62 (61.39%) Max nb of predicted sites per peak: 3  (chrX:65858294-65858687) Mean nb of predicted sites per peak: 1.61	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=4.07; evalue=8.5e-05 yrGACAAGTCyr YRGACTTGTCYR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 37 (36.63%) Max nb of predicted sites per peak: 4  (chr8:124624702-124624939) Mean nb of predicted sites per peak: 1.51	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=3.81; evalue=0.00015 cstCCCCGCCss SSGGCGGGGASG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 22 (21.78%) Max nb of predicted sites per peak: 4  (chr10:90750758-90751286) Mean nb of predicted sites per peak: 1.91	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=14.99; evalue=1e-15 gyccrGGCATGTcya TRGACATGCCYGGRC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 62 (61.39%) Max nb of predicted sites per peak: 4  (chr7:137849590-137849802) Mean nb of predicted sites per peak: 1.58	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=6.59; evalue=2.6e-07 hrGACATGTCyd HRGACATGTCYD	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 41 (40.59%) Max nb of predicted sites per peak: 8  (chr21:19080891-19081084) Mean nb of predicted sites per peak: 2.37	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=24.28; evalue=5.2e-25 gtgGrCATGyCyrGrCAWGycyam KTRGRCWTGYCYRGRCATGYCCAC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 61 (60.40%) Max nb of predicted sites per peak: 4  (chrX:65858294-65858687) Mean nb of predicted sites per peak: 2.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=3.54; evalue=0.00029 scgtCCCCGCCgss SSCGGCGGGGACGS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 25 (24.75%) Max nb of predicted sites per peak: 6  (chr18:57566843-57567108) Mean nb of predicted sites per peak: 2.36	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=3.23; evalue=0.00059 hrgACAAGTCtrr YYAGACTTGTCYD	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 30 (29.70%) Max nb of predicted sites per peak: 4  (chr8:124624702-124624939) Mean nb of predicted sites per peak: 1.47	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=24.28; evalue=5.2e-25 krrRCATGyCcrGrCATGTcyrmr YKYRGACATGYCYGGRCATGYYYM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 65 (64.36%) Max nb of predicted sites per peak: 4  (chrX:65858294-65858687) Mean nb of predicted sites per peak: 2.02	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=2.20; evalue=0.0063 yvTGAcTCAbm KVTGAGTCABR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 15 (14.85%) Max nb of predicted sites per peak: 2  (chr8:20285652-20285834) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title Lesson_Exercise -i $RSAT/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145422_2025-10-28.145422_cIh8x5/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145422_2025-10-28.145422_cIh8x5

Warning: Not a single pattern was found in file tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145422_2025-10-28.145422_cIh8x5/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145422_2025-10-28.145422_cIh8x5/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab