/var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145428_2025-10-28.145428_er30Hd/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145428_2025-10-28.145428_er30Hd/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title Lesson_Exercise -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145428_2025-10-28.145428_er30Hd/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145428_2025-10-28.145428_er30Hd/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145428_2025-10-28.145428_er30Hd/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	101
	Sum of sequence lengths      	26512
	Min sequence length          	0
	Max sequence length          	583
	Average sequence length      	262
	Possible positions           	26411
 Oligonucleotide statistics:
	Total occurrences    	25713
 Position interval parameters:
	Position interval    	20
	Number of windows    	30
	Total positions      	26411
	Degrees of freedom   	29
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-15	[-299,-280]	-289.5	3	23
	2	-14	[-279,-260]	-269.5	7	91
	3	-13	[-259,-240]	-249.5	10	179
	4	-12	[-239,-220]	-229.5	12	219
	5	-11	[-219,-200]	-209.5	15	262
	6	-10	[-199,-180]	-189.5	23	418
	7	-9	[-179,-160]	-169.5	31	533
	8	-8	[-159,-140]	-149.5	38	700
	9	-7	[-139,-120]	-129.5	48	863
	10	-6	[-119,-100]	-109.5	60	1099
	11	-5	[-99,-80]	-89.5	78	1428
	12	-4	[-79,-60]	-69.5	91	1688
	13	-3	[-59,-40]	-49.5	95	1868
	14	-2	[-39,-20]	-29.5	98	1934
	15	-1	[-19,0]	-9.5	101	2002
	16	0	[1,20]	10.5	101	1996
	17	1	[21,40]	30.5	98	1926
	18	2	[41,60]	50.5	95	1857
	19	3	[61,80]	70.5	89	1659
	20	4	[81,100]	90.5	76	1389
	21	5	[101,120]	110.5	59	1076
	22	6	[121,140]	130.5	48	845
	23	7	[141,160]	150.5	38	688
	24	8	[161,180]	170.5	31	519
	25	9	[181,200]	190.5	23	403
	26	10	[201,220]	210.5	15	255
	27	11	[221,240]	230.5	12	214
	28	12	[241,260]	250.5	10	174
	29	13	[261,280]	270.5	6	85
	30	14	[281,300]	290.5	3	18

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-289.5         	occurrences in window	1	[-299,-280]
	11	-269.5         	occurrences in window	2	[-279,-260]
	12	-249.5         	occurrences in window	3	[-259,-240]
	13	-229.5         	occurrences in window	4	[-239,-220]
	14	-209.5         	occurrences in window	5	[-219,-200]
	15	-189.5         	occurrences in window	6	[-199,-180]
	16	-169.5         	occurrences in window	7	[-179,-160]
	17	-149.5         	occurrences in window	8	[-159,-140]
	18	-129.5         	occurrences in window	9	[-139,-120]
	19	-109.5         	occurrences in window	10	[-119,-100]
	20	-89.5          	occurrences in window	11	[-99,-80]
	21	-69.5          	occurrences in window	12	[-79,-60]
	22	-49.5          	occurrences in window	13	[-59,-40]
	23	-29.5          	occurrences in window	14	[-39,-20]
	24	-9.5           	occurrences in window	15	[-19,0]
	25	10.5           	occurrences in window	16	[1,20]
	26	30.5           	occurrences in window	17	[21,40]
	27	50.5           	occurrences in window	18	[41,60]
	28	70.5           	occurrences in window	19	[61,80]
	29	90.5           	occurrences in window	20	[81,100]
	30	110.5          	occurrences in window	21	[101,120]
	31	130.5          	occurrences in window	22	[121,140]
	32	150.5          	occurrences in window	23	[141,160]
	33	170.5          	occurrences in window	24	[161,180]
	34	190.5          	occurrences in window	25	[181,200]
	35	210.5          	occurrences in window	26	[201,220]
	36	230.5          	occurrences in window	27	[221,240]
	37	250.5          	occurrences in window	28	[241,260]
	38	270.5          	occurrences in window	29	[261,280]
	39	290.5          	occurrences in window	30	[281,300]
seq id occ chi2 df Pval Eval sig rank -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5
aa aa 1641 98.2 29 1.9e-09 3e-08 7.52 1 1 3 17 19 19 41 27 48 50 95 88 101 61 112 113 110 111 90 133 83 71 49 55 48 35 21 18 18 2 2
cg cg 918 92.2 29 1.7e-08 2.7e-07 6.57 2 2 7 19 15 14 22 29 27 32 32 51 54 64 55 66 48 56 55 48 55 40 25 23 18 14 12 13 18 4 0
gg gg 2216 43.7 29 3.9e-02 0.63 0.20 3 5 8 19 21 36 41 42 66 75 82 82 152 184 139 162 167 155 169 143 125 84 53 63 47 29 24 17 16 7 3
cc cc 2147 43.6 29 4.0e-02 0.64 0.19 4 2 11 14 12 16 20 50 54 73 111 131 136 140 161 143 146 173 157 119 106 96 81 68 33 29 30 17 8 8 2
tt tt 1600 42.8 29 4.7e-02 0.76 0.12 5 0 8 13 10 10 27 33 38 50 55 110 108 126 129 112 105 119 99 80 96 69 45 39 41 25 12 22 9 10 0
gt gt 1262 42.4 29 5.2e-02 0.82 0.08 6 1 3 6 8 9 11 23 25 48 56 82 91 118 80 94 99 73 92 72 86 43 42 28 29 15 11 5 8 2 2
tg tg 1845 38.1 29 1.2e-01 1.9 -0.28 7 1 5 8 14 13 19 25 47 69 69 99 115 164 132 153 147 127 153 110 98 73 63 47 25 31 16 9 8 3 2
ga ga 1505 33.7 29 2.5e-01 4 -0.60 8 2 6 5 19 23 19 25 42 51 50 86 92 89 107 105 117 111 105 101 76 85 58 36 32 23 14 16 7 3 0
ta ta 887 31.9 29 3.3e-01 5.2 -0.72 9 1 0 4 9 7 17 20 15 34 44 57 57 49 52 55 69 64 60 54 56 35 32 24 29 19 8 4 8 4 0
ac ac 1223 31.4 29 3.5e-01 5.5 -0.74 10 1 7 10 8 14 21 34 37 36 45 70 87 65 88 98 94 98 66 89 50 59 32 32 27 15 10 10 13 5 2
tc tc 1618 31.4 29 3.5e-01 5.6 -0.74 11 0 3 9 13 12 32 40 57 55 69 92 103 108 117 134 113 129 111 93 94 48 65 30 24 22 14 13 10 8 0
ct ct 2044 26.9 29 5.8e-01 9.3 -0.97 12 2 5 9 16 16 39 42 74 79 75 103 138 133 147 165 158 155 149 126 100 72 71 45 33 36 20 14 11 10 1
gc gc 1962 26.8 29 5.8e-01 9.4 -0.97 13 3 11 21 20 22 38 41 55 67 76 93 115 152 144 143 133 130 146 130 102 77 54 55 30 39 22 20 16 6 1
ag ag 1947 25.8 29 6.4e-01 10 -1.01 14 2 6 9 14 28 28 32 47 60 84 108 122 133 146 126 151 130 137 145 107 88 65 57 46 31 17 17 5 5 1
at at 1053 24.9 29 6.9e-01 11 -1.04 15 0 1 3 13 7 12 26 21 30 51 62 53 66 75 81 80 82 85 68 63 47 39 23 23 19 6 6 9 2 0
ca ca 1845 21.5 29 8.4e-01 13 -1.13 16 0 7 13 8 16 31 44 47 46 85 93 116 136 150 140 138 131 131 141 92 75 51 50 34 21 18 13 10 6 2 
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