/var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145428_2025-10-28.145428_er30Hd/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145428_2025-10-28.145428_er30Hd/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145428_2025-10-28.145428_er30Hd/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145428_2025-10-28.145428_er30Hd/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145428_2025-10-28.145428_er30Hd/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145428_2025-10-28.145428_er30Hd/results/discovered_motifs/peak-motifs_motifs_disco_compa
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145428_2025-10-28.145428_er30Hd/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145428_2025-10-28.145428_er30Hd/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145428_2025-10-28.145428_er30Hd/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145428_2025-10-28.145428_er30Hd/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145428_2025-10-28.145428_er30Hd/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145428_2025-10-28.145428_er30Hd/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	15	125
		file1	2	12	62
		file1	3	12	99
		file1	4	15	97
		file1	5	12	112
		file1	6	24	65
		file1	7	14	74
		file1	8	13	64
		file1	9	24	59
		file1	10	11	77
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145428_2025-10-28.145428_er30Hd/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		15		125
		file2		2		12		62
		file2		3		12		99
		file2		4		15		97
		file2		5		12		112
		file2		6		24		65
		file2		7		14		74
		file2		8		13		64
		file2		9		24		59
		file2		10		11		77
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m4 0.909 0.909 15 15 15 15 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m1 0.909 0.909 15 15 15 15 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m1 0.987 0.908 24 24 23 25 0.9200 0.9583 0.9583 D -1
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m4 0.987 0.908 24 24 23 25 0.9200 0.9583 0.9583 D 1
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m3 0.979 0.904 12 13 12 13 0.9231 1.0000 0.9231 D 0
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m2 0.979 0.904 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m5 0.872 0.872 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m2 0.872 0.872 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m3 0.955 0.818 14 12 12 14 0.8571 0.8571 1.0000 D 1
oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m2 0.955 0.818 12 14 12 14 0.8571 1.0000 0.8571 D -1
oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m3 0.841 0.776 12 13 12 13 0.9231 1.0000 0.9231 R -1
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m5 0.841 0.776 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m4 0.887 0.709 12 15 12 15 0.8000 1.0000 0.8000 D -3
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m5 0.887 0.709 15 12 12 15 0.8000 0.8000 1.0000 D 3
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m1 0.874 0.699 12 15 12 15 0.8000 1.0000 0.8000 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m5 0.874 0.699 15 12 12 15 0.8000 0.8000 1.0000 D 0
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m3 0.758 0.657 15 13 13 15 0.8667 0.8667 1.0000 R 2
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m4 0.758 0.657 13 15 13 15 0.8667 1.0000 0.8667 R 0
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m4 0.774 0.619 12 15 12 15 0.8000 1.0000 0.8000 R 0
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m2 0.774 0.619 15 12 12 15 0.8000 0.8000 1.0000 R 3
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m2 0.730 0.584 15 12 12 15 0.8000 0.8000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m1 0.730 0.584 12 15 12 15 0.8000 1.0000 0.8000 D 0
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m4 0.922 0.576 15 24 15 24 0.6250 1.0000 0.6250 D -7
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m4 0.922 0.576 24 15 15 24 0.6250 0.6250 1.0000 D 7
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m1 0.913 0.571 15 24 15 24 0.6250 1.0000 0.6250 D -8
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m4 0.913 0.571 24 15 15 24 0.6250 0.6250 1.0000 D 8
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 0.904 0.565 24 15 15 24 0.6250 0.6250 1.0000 D 1
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 0.904 0.565 15 24 15 24 0.6250 1.0000 0.6250 D -1
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m1 0.893 0.558 24 15 15 24 0.6250 0.6250 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m4 0.893 0.558 15 24 15 24 0.6250 1.0000 0.6250 D 0
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m5 0.924 0.462 24 12 12 24 0.5000 0.5000 1.0000 D 10
oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m4 0.924 0.462 12 24 12 24 0.5000 1.0000 0.5000 R -2
oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m1 0.911 0.455 12 24 12 24 0.5000 1.0000 0.5000 R -1
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m5 0.911 0.455 24 12 12 24 0.5000 0.5000 1.0000 D 11
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m4 0.786 0.426 13 24 13 24 0.5417 1.0000 0.5417 R -2
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m3 0.786 0.426 24 13 13 24 0.5417 0.5417 1.0000 R 9
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 0.832 0.416 24 12 12 24 0.5000 0.5000 1.0000 D 11
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 0.832 0.416 12 24 12 24 0.5000 1.0000 0.5000 D -11
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m1 0.766 0.415 13 24 13 24 0.5417 1.0000 0.5417 R -1
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m3 0.766 0.415 24 13 13 24 0.5417 0.5417 1.0000 R 10
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m4 0.827 0.414 12 24 12 24 0.5000 1.0000 0.5000 R -2
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m2 0.827 0.414 24 12 12 24 0.5000 0.5000 1.0000 R 10 
 Host name	rsat
 Job started	2025-10-28.145449
 Job done	2025-10-28.145458
 Seconds	0.37
	user	0.37
	system	0.27
	cuser	7.69
;	csystem	1.12