RSAT - compare-matrices result

Analysis: result (28/10/2025 14:54)

Command: compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145428_2025-10-28.145428_er30Hd/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145428_2025-10-28.145428_er30Hd/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

Input files

Type	File
file1	peak-motifs_motifs_discovered.tf
file2	peak-motifs_motifs_discovered.tf

Output files

Type	File
match_table_txt	peak-motifs_motifs_disco_compa.tab
match_table_html	peak-motifs_motifs_disco_compa.html
alignments_1ton	peak-motifs_motifs_disco_compa_alignments_1ton.tab
alignments_1ton_html	peak-motifs_motifs_disco_compa_alignments_1ton.html

Directories

Type	Directory
output	.
aligned_logos	peak-motifs_motifs_disco_compa_aligned_logos