# RSAT - peak-motifs result

### Analysis: overlap_regions (28/10/2025 14:56)

Input files
test_seq | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/peak-motifspeak_seq
Directories
output | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/
oligos_6nt_mkv2_m1 | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m1/
oligos_6nt_mkv2_m2 | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m2/
oligos_6nt_mkv2_m3 | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m3/
oligos_6nt_mkv2_m4 | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m4/
oligos_6nt_mkv2_m5 | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m5/
oligos_7nt_mkv2_m1 | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_7nt_mkv2_m1/
oligos_7nt_mkv2_m2 | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_7nt_mkv2_m2/
oligos_7nt_mkv2_m3 | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_7nt_mkv2_m3/
oligos_7nt_mkv2_m4 | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_7nt_mkv2_m4/
oligos_7nt_mkv2_m5 | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_7nt_mkv2_m5/
Output files
1nt_test_freq | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab
1nt_test_heatmap | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/composition/peak-motifs_test_heatmap-1str-ovlp_1nt.png
1nt_test_inclusive | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/composition/peak-motifs_test_inclusive-1str-ovlp_1nt.txt
1nt_test_profiles | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab
1nt_test_profiles_graph | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.png
1nt_test_profiles_index | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20_graph_index.html
1nt_test_transitions | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/composition/peak-motifs_test_transitions-1str-ovlp_1nt.tab
2nt_test_freq | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab
2nt_test_heatmap | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/composition/peak-motifs_test_heatmap-1str-ovlp_2nt.png
2nt_test_inclusive | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
2nt_test_profiles | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
2nt_test_profiles_graph | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.png
2nt_test_profiles_index | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20_graph_index.html
2nt_test_transitions | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/composition/peak-motifs_test_transitions-1str-ovlp_2nt.tab
archive | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/peak-motifs_archive.zip
links | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/reports/peak-motifs_links.html
log | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/reports/peak-motifs_log.txt
merged_sites | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/sites/peak-motifs_all_motifs_seqcoord.tab
merged_sites_bed | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/sites/peak-motifs_all_motifs_seqcoord.bed
merged_words | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/merged_words/peak-motifs_merged_words.tab
merged_words_heatmap | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/merged_words/peak-motifs_merged_words_heatmap.png
merged_words_html | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/merged_words/peak-motifs_merged_words.html
motifs_disco_clusters | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/peak-motifs_motifs_discovered_clusters
motifs_disco_clusters_html | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/peak-motifs_motifs_discovered_clusters_SUMMARY.html
motifs_disco_compa | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
motifs_disco_compa_alignments_1ton | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
motifs_disco_compa_alignments_1ton_html | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
motifs_disco_compa_gml | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/peak-motifs_motifs_disco_compa.gml
motifs_disco_compa_html | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
motifs_discovered | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/peak-motifs_motifs_discovered.tf
motifs_discovered_table | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/peak-motifs_motifs_discovered_table.tab
oligos_6nt_mkv2 | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2.tab
oligos_6nt_mkv2_2pssm | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_log.txt
oligos_6nt_mkv2_asmb | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm.asmb
oligos_6nt_mkv2_m1_logo | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_logo.png
oligos_6nt_mkv2_m1_logo_rc | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_logo_rc.png
oligos_6nt_mkv2_m1_pssm_enrichment | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_scan_mkv1_enrichment.tab
oligos_6nt_mkv2_m1_pssm_enrichment_png | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_scan_mkv1_enrichment.png
oligos_6nt_mkv2_m1_pssm_site_distrib | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_site_distrib.tab
oligos_6nt_mkv2_m1_pssm_site_distrib_graph | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_site_distrib.png
oligos_6nt_mkv2_m1_pssm_sites | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_sites.tab
oligos_6nt_mkv2_m1_pssm_sites_per_peak | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_sites_per_peak.tab
oligos_6nt_mkv2_m1_pssm_sites_per_peak_graph | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_sites_per_peak.png
oligos_6nt_mkv2_m1_tab | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tab
oligos_6nt_mkv2_m1_tf | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf
oligos_6nt_mkv2_m1_vs_ref | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_ref.tab
oligos_6nt_mkv2_m1_vs_ref_html | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_ref.html
oligos_6nt_mkv2_m2_logo | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_logo.png
oligos_6nt_mkv2_m2_logo_rc | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_logo_rc.png
oligos_6nt_mkv2_m2_pssm_enrichment | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_scan_mkv1_enrichment.tab
oligos_6nt_mkv2_m2_pssm_enrichment_png | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_scan_mkv1_enrichment.png
oligos_6nt_mkv2_m2_pssm_site_distrib | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_site_distrib.tab
oligos_6nt_mkv2_m2_pssm_site_distrib_graph | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_site_distrib.png
oligos_6nt_mkv2_m2_pssm_sites | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_sites.tab
oligos_6nt_mkv2_m2_pssm_sites_per_peak | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_sites_per_peak.tab
oligos_6nt_mkv2_m2_pssm_sites_per_peak_graph | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_sites_per_peak.png
oligos_6nt_mkv2_m2_tab | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tab
oligos_6nt_mkv2_m2_tf | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf
oligos_6nt_mkv2_m2_vs_ref | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_ref.tab
oligos_6nt_mkv2_m2_vs_ref_html | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_ref.html
oligos_6nt_mkv2_m3_logo | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_logo.png
oligos_6nt_mkv2_m3_logo_rc | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_logo_rc.png
oligos_6nt_mkv2_m3_pssm_enrichment | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_scan_mkv1_enrichment.tab
oligos_6nt_mkv2_m3_pssm_enrichment_png | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_scan_mkv1_enrichment.png
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synthesis | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/peak-motifs_synthesis.html
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timelog | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/reports/peak-motifs_timelog.txt
timelog_html | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/reports/peak-motifs_timelog.html
timetable | /var/www/html/rsat/public_html/tmp/www-data/2025/10/28/peak-motifs.2025-10-28.145617_2025-10-28.145617_nDfMXm/reports/peak-motifs_timetable.txt