; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	7	12	38	0	0	0	0	0	12	7
c	13	12	0	5	0	39	0	0	8	1
g	12	12	0	34	39	0	3	39	13	19
t	7	3	1	0	0	0	36	0	6	12
//
; Sites	39
>site_0
TGAGGCTGAG
>site_1
GAACGCTGTG
>site_2
TGAGGCTGAG
>site_3
GCAGGCGGCG
>site_4
TCAGGCTGCT
>site_5
TGAGGCTGAG
>site_6
GAACGCTGTG
>site_7
AAAGGCTGGG
>site_8
GCAGGCTGTT
>site_9
TCAGGCTGAA
>site_10
TGAGGCTGGA
>site_11
CGAGGCTGCA
>site_12
AAAGGCTGGG
>site_13
CAAGGCTGCC
>site_14
GGAGGCTGAG
>site_15
CCAGGCTGGA
>site_16
GAAGGCTGCA
>site_17
GGAGGCTGAG
>site_18
CTAGGCTGGT
>site_19
AAAGGCTGAG
>site_20
CCAGGCTGGT
>site_21
GGAGGCTGTG
>site_22
CCAGGCTGGT
>site_23
CCAGGCTGTT
>site_24
ATACGCTGGT
>site_25
GGAGGCTGAT
>site_26
CAAGGCTGCA
>site_27
CCAGGCTGCT
>site_28
CGTGGCTGAT
>site_29
TTACGCTGGG
>site_30
AAAGGCGGGT
>site_31
CAAGGCTGAG
>site_32
GGAGGCTGAG
>site_33
CCAGGCTGGT
>site_34
CCAGGCTGGA
>site_35
GAACGCTGTG
>site_36
AAAGGCTGGG
>site_37
GCAGGCGGCG
>site_38
AGAGGCTGAG
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m1_rc.png
;
a	9	22	4	0	1	1	1	0	47	10	18
c	16	5	6	49	1	2	2	3	1	9	9
g	7	10	34	0	1	47	47	44	0	19	12
t	18	13	6	1	47	0	0	3	2	12	11
//
; Sites	50
>site_0
CATCTGGGATG
>site_1
CAGCTGGCATA
>site_2
TACCTGGGAGA
>site_3
TGGCTGGGACC
>site_4
CAGCTGCGAAA
>site_5
GAGCTCGGAGA
>site_6
TCGTTGGGAAG
>site_7
CATCTGGGATG
>site_8
CAGCTGGCATA
>site_9
CAGCTGCGAAA
>site_10
GAGCTCGGAGA
>site_11
CATCTGGGATG
>site_12
CAGCTGGCATA
>site_13
TACCTGGGAGA
>site_14
TGGCTGGGACC
>site_15
TTGCTGGGATG
>site_16
AGGCTGGGAAT
>site_17
GGGCTGGTAGC
>site_18
TAGCTGGTAGC
>site_19
TTCCTGGGAGT
>site_20
CCGCAGGGACT
>site_21
CTTCTGGGAGT
>site_22
CTGCTGGGAAA
>site_23
GTTCTGGGACA
>site_24
TAACTGGGACC
>site_25
TAGCTGGGACT
>site_26
CACCTGGGAGG
>site_27
ACACTGGGAGA
>site_28
GTGCTGGGATT
>site_29
ACGCTGGTAGG
>site_30
TAGCTGGGTAT
>site_31
AGCCTGGGAGA
>site_32
GAGCCGGGAGA
>site_33
TGTCTGGGAGA
>site_34
ACGCTGGGAGT
>site_35
GTGCTGGGTAA
>site_36
ATGCTAGGAAC
>site_37
CACCTGGGAGC
>site_38
CTGCTGAGACG
>site_39
TAGCTGGGATG
>site_40
TGGCTGGGACC
>site_41
TTGCTGGGATG
>site_42
AGGCTGGGAAT
>site_43
TGGCGGGGAGG
>site_44
AAGCTGGGATG
>site_45
AGACTGGGAAA
>site_46
TTGCTGGGAGC
>site_47
CTACTGGGACA
>site_48
CTGCTGGGATT
>site_49
TAGCTGGGCGT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m2_rc.png
;
a	6	2	25	0	0	0	0	25	7	6
c	3	11	0	0	0	0	0	0	2	1
g	10	5	0	25	25	0	25	0	7	12
t	6	7	0	0	0	25	0	0	9	6
//
; Sites	25
>site_0
GTAGGTGATG
>site_1
ACAGGTGATG
>site_2
GCAGGTGAGA
>site_3
GTAGGTGATG
>site_4
ACAGGTGATG
>site_5
AGAGGTGAGA
>site_6
GAAGGTGATG
>site_7
GTAGGTGATG
>site_8
GCAGGTGAGA
>site_9
TTAGGTGAAG
>site_10
TTAGGTGAAC
>site_11
ACAGGTGATG
>site_12
ACAGGTGAAG
>site_13
GGAGGTGAAG
>site_14
TGAGGTGAGA
>site_15
GCAGGTGAAT
>site_16
CCAGGTGAGT
>site_17
CTAGGTGACT
>site_18
CCAGGTGATT
>site_19
TAAGGTGAAT
>site_20
GCAGGTGAGA
>site_21
TTAGGTGAAG
>site_22
AGAGGTGAGA
>site_23
GCAGGTGATT
>site_24
TGAGGTGACG
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m3_rc.png
;
a	3	9	28	0	30	0	1	29	6	7
c	6	6	3	0	0	31	27	1	4	12
g	10	9	0	31	0	0	3	1	18	5
t	12	7	0	0	1	0	0	0	3	7
//
; Sites	31
>site_0
TCCGACCAGC
>site_1
GAAGACCAGC
>site_2
TCAGACCAGT
>site_3
TCCGACCAGC
>site_4
GAAGACCAGC
>site_5
TCAGACCAGT
>site_6
TCCGACCAGC
>site_7
GAAGACCAGC
>site_8
GGAGACCAAT
>site_9
TCAGACCATC
>site_10
CAAGACCAGA
>site_11
GAAGACGACA
>site_12
TTAGACCAGT
>site_13
TTAGACCGAA
>site_14
GAAGACCAAA
>site_15
GGAGACCAGA
>site_16
AGAGACGACT
>site_17
CAAGACCAGC
>site_18
TTAGACCAGC
>site_19
AGAGACAACG
>site_20
GGAGACCAAG
>site_21
CGAGACCAGC
>site_22
AAAGACGATG
>site_23
CTAGACCCGG
>site_24
CGAGACCAGC
>site_25
CTAGACCAAA
>site_26
TAAGTCCACG
>site_27
GGAGACCAAT
>site_28
GTAGACCAGA
>site_29
TTAGACCATT
>site_30
TGAGACCAGC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m4_rc.png
;
; Host name	rsat
; Job started	2025-10-30.045421
; Job done	2025-10-30.045422
; Seconds	0.14
;	user	0.14
;	system	0.05
;	cuser	0.93
;	csystem	0.12
