; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	2	10	26	0	31	0	2	29	4	9	5
c	8	7	3	1	0	30	29	1	0	12	17
g	9	6	1	30	0	0	0	0	25	3	4
t	12	8	1	0	0	1	0	1	2	7	5
//
; Sites	31
>site_0
TCCGACCAGCC
>site_1
GAAGACCAGCA
>site_2
TCAGACCAGTC
>site_3
TCCGACCAGCC
>site_4
GAAGACCAGCA
>site_5
TCAGACCAGTC
>site_6
TCCGACCAGCC
>site_7
GAAGACCAGCA
>site_8
GGAGACCAATC
>site_9
TCAGACCATCT
>site_10
CAAGACCAGAC
>site_11
TTAGACCAGTT
>site_12
GAAGACCAAAC
>site_13
GGAGACCAGAA
>site_14
GATGACCAGTG
>site_15
AAAGATCAGAT
>site_16
CTACACCAGGC
>site_17
CAAGACCAGCC
>site_18
TTAGACCAGCC
>site_19
CGAGACCAGCC
>site_20
TAAGACAAGAG
>site_21
CTAGACCCGGC
>site_22
CCGGACCAGGT
>site_23
ATAGACAAGAG
>site_24
CGAGACCAGCC
>site_25
TAAGACCTGAA
>site_26
CTAGACCAAAC
>site_27
GGAGACCAATC
>site_28
GTAGACCAGAG
>site_29
TTAGACCATTC
>site_30
TGAGACCAGCT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m1_rc.png
;
a	9	24	3	0	1	1	1	0	46	9	16	19
c	14	5	3	50	1	2	2	6	2	10	9	10
g	10	9	39	0	1	48	48	42	0	18	11	5
t	18	13	6	1	48	0	0	3	3	14	15	17
//
; Sites	51
>site_0
CATCTGGGATGT
>site_1
CAGCTGGCATAT
>site_2
GAGCTGGCAGTA
>site_3
TACCTGGGAGAG
>site_4
TGGCTGGGACCT
>site_5
CAGCTGCGAAAC
>site_6
GAGCTCGGAGAA
>site_7
TCGTTGGGAAGT
>site_8
CATCTGGGATGT
>site_9
CAGCTGGCATAT
>site_10
CAGCTGCGAAAC
>site_11
GAGCTCGGAGAA
>site_12
CATCTGGGATGT
>site_13
CAGCTGGCATAT
>site_14
GAGCTGGCAGTA
>site_15
TACCTGGGAGAG
>site_16
TGGCTGGGACCT
>site_17
TTGCTGGGATGA
>site_18
AGGCTGGGAATA
>site_19
GGGCTGGTAGCT
>site_20
TAGCTGGTAGCT
>site_21
TTCCTGGGAGTC
>site_22
CCGCAGGGACTC
>site_23
AGGCTGGGCCCG
>site_24
CTTCTGGGAGTA
>site_25
CTGCTGGGAAAC
>site_26
GTTCTGGGACAA
>site_27
TAACTGGGACCA
>site_28
TAGCTGGGACTA
>site_29
ACACTGGGAGAC
>site_30
GTGCTGGGATTA
>site_31
ACGCTGGTAGGG
>site_32
TAGCTGGGTATA
>site_33
GAGCCGGGAGAC
>site_34
TGTCTGGGAGAC
>site_35
ACGCTGGGAGTT
>site_36
GTGCTGGGTAAA
>site_37
ATGCTAGGAACT
>site_38
CTGCTGAGACGT
>site_39
TAGCTGGGATGA
>site_40
TGGCTGGGACCT
>site_41
TTGCTGGGATGA
>site_42
AGGCTGGGAATA
>site_43
TGGCGGGGAGGC
>site_44
AAGCTGGGATGC
>site_45
TTGCTGGGAGCT
>site_46
CTACTGGGACAT
>site_47
AAGCTGGGTTTA
>site_48
CTGCTGGGATTA
>site_49
TAGCTGGGCGTG
>site_50
GAGCTGGCATTA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m2_rc.png
;
a	14	14	4	35	0	0	39	0	1	17	14
c	3	9	39	0	4	41	1	36	41	10	10
g	18	7	0	1	0	2	0	1	0	1	14
t	8	13	0	7	39	0	3	6	1	15	5
//
; Sites	43
>site_0
ATCTTCACCAA
>site_1
AACATCATCCG
>site_2
GTCATCACCTA
>site_3
GCCATCACCTG
>site_4
TCCATCATCAG
>site_5
ATCATCTCCAC
>site_6
GACATGACCAT
>site_7
ATCTTCACCAA
>site_8
AACATCATCCG
>site_9
GTCATCACCTA
>site_10
GCCATCACCTG
>site_11
TCCATCATCAG
>site_12
ATCATCTCCAC
>site_13
GGCATCACCTT
>site_14
GACATGACCAT
>site_15
ATCTTCACCAA
>site_16
AACATCATCCG
>site_17
GTCATCACCTA
>site_18
TCCATCATCAG
>site_19
ATCATCTCCAC
>site_20
ATCATCACCCA
>site_21
GACTTCACCTA
>site_22
GGCATCACCCA
>site_23
GACATCACCTG
>site_24
TCCATCACTCA
>site_25
AACATCACCCC
>site_26
GGAATCACCAT
>site_27
CTCATCACCAC
>site_28
CTCTTCACCTG
>site_29
GCCTTCACCTC
>site_30
TACATCCCCAG
>site_31
AACATCAGCCA
>site_32
TGCATCACATG
>site_33
ACCACCACCGT
>site_34
CACACCACCAC
>site_35
GGAATCACCTG
>site_36
TGCACCACCAC
>site_37
ATCATCACCCA
>site_38
GACTTCACCTA
>site_39
GCAATCACCTG
>site_40
GACGTCACCTC
>site_41
GAAATCACCCA
>site_42
TGCACCACCAC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m3_rc.png
;
; Host name	rsat
; Job started	2025-10-30.045424
; Job done	2025-10-30.045425
; Seconds	0.12
;	user	0.12
;	system	0.02
;	cuser	0.75
;	csystem	0.1
