RSAT - peak-motifs result

Analysis: F1 (30/10/2025 04:54)

peak-motifs  -v 1 -title F1 -i $RSAT/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: aggctg (sig=2.38; e-value=0.0042) RC: cagcct oligos_6nt_mkv2_m2 assembly: gctggga (sig=2.14; e-value=0.0072) RC: tcccagc oligos_6nt_mkv2_m3 assembly: aggtga (sig=0.81; e-value=0.15) RC: tcacct oligos_6nt_mkv2_m4 assembly: agacca (sig=0.20; e-value=0.63) RC: tggtct oligos_6nt_mkv2_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: agaccag (sig=1.45; e-value=0.035) RC: ctggtct oligos_7nt_mkv2_m2 assembly: gctgggag (sig=1.39; e-value=0.041) RC: ctcccagc oligos_7nt_mkv2_m3 assembly: catcacc (sig=0.84; e-value=0.14) RC: ggtgatg oligos_7nt_mkv2_m4 : (sig=; e-value=1) RC: oligos_7nt_mkv2_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=2.38; evalue=0.0042 svAGGCTGrk MYCAGCCTBS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (19.05%) Max nb of predicted sites per peak: 24  (FDFT1-201) Mean nb of predicted sites per peak: 8.75	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=2.14; evalue=0.0072 yaGCTGGGAgr YCTCCCAGCTR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (19.05%) Max nb of predicted sites per peak: 15  (FDFT1-201) Mean nb of predicted sites per peak: 7.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=0.81; evalue=0.15 gcAGGTGAdg CHTCACCTGC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (19.05%) Max nb of predicted sites per peak: 14  (FDFT1-201) Mean nb of predicted sites per peak: 6.75	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=0.20; evalue=0.63 krAGACCAgc GCTGGTCTYM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (19.05%) Max nb of predicted sites per peak: 16  (FDFT1-201) Mean nb of predicted sites per peak: 7.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_7nt_mkv2_m1	k-mer sig=1.45; evalue=0.035 bmAGACCAGmc GKCTGGTCTKV	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (19.05%) Max nb of predicted sites per peak: 17  (FDFT1-201) Mean nb of predicted sites per peak: 7.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m2	k-mer sig=1.39; evalue=0.041 yaGCTGGGAgaw WTCTCCCAGCTR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (19.05%) Max nb of predicted sites per peak: 19  (FDFT1-201) Mean nb of predicted sites per peak: 8.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m3	k-mer sig=0.84; evalue=0.14 rwCATCACChv BDGGTGATGWY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (19.05%) Max nb of predicted sites per peak: 16  (FDFT1-201) Mean nb of predicted sites per peak: 7.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title F1 -i $RSAT/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU

Warning: Not a single pattern was found in file tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/10/30/peak-motifs.2025-10-30.045413_2025-10-30.045413_ZEQzsU/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab