; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/11/04/oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/11/04/oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/11/04/oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/11/04/oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/11/04/oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	2	3	2	2	1	1	0	1	2	1	0	4	2	0	2	2	0	2	2	1	1	2	0	1	0	2	2	2	3	6
c	8	3	9	8	13	0	2	12	0	13	4	2	14	4	2	12	13	2	14	1	12	12	1	12	15	4	3	6	5	5
g	6	7	2	5	1	12	14	3	12	1	13	11	0	11	12	1	2	12	1	14	2	3	15	3	2	9	8	6	9	3
t	1	4	4	2	2	4	1	1	3	2	0	0	1	2	1	2	2	1	0	1	2	0	1	1	0	2	4	3	0	3
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m1_rc.png
;
a	28	20	9	15	14	4	7	1	3	12	4	4	96	14	27	22
c	42	54	92	73	112	5	16	127	5	15	133	15	21	34	54	43
g	46	46	33	40	16	123	115	14	136	115	5	125	21	81	51	44
t	29	25	11	17	3	13	7	3	1	3	3	1	7	16	13	36
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m2_rc.png
;
a	4	1	0	4	2	2	4	0	3	3	0	1	2	1	1	3	1	1	1	1	0	2	3	2	1	1	3	1
c	6	9	12	9	13	2	3	16	4	2	18	1	14	14	4	13	3	15	14	15	2	13	14	2	2	4	6	7
g	8	6	6	5	4	15	9	2	11	13	1	17	3	4	12	1	13	1	3	3	16	1	2	14	13	14	7	7
t	1	3	1	1	0	0	3	1	1	1	0	0	0	0	2	2	2	2	1	0	1	3	0	1	3	0	3	4
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m3_rc.png
;
a	5	5	11	0	0	3	2	1	2	1	6	2	0	0	24	3	2	4	3	3	12
c	19	18	23	10	41	2	41	39	3	41	5	34	44	4	10	35	11	30	29	16	11
g	18	17	10	12	5	41	2	7	37	3	37	9	3	44	8	7	34	11	8	19	16
t	6	8	4	26	2	2	3	1	6	3	0	3	1	0	6	3	1	3	8	10	9
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m4_rc.png
;
a	9	2	6	2	2	3	4	1	1	0	0	2	2	0	4	0	1	2	3	4	7
c	9	18	7	4	21	5	7	26	3	28	4	20	24	1	22	26	7	6	10	14	12
g	7	8	16	22	5	18	3	3	23	1	25	7	3	29	0	4	20	21	15	9	9
t	5	2	1	2	2	4	16	0	3	1	1	1	1	0	4	0	2	1	2	3	2
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m5_rc.png
;
a	8	3	4	6	2	2	5	1	3	5	1	1	0	1	2	1	0	2	2	1	3	7	9	5
c	8	14	18	16	18	9	3	28	5	2	28	0	24	27	2	25	3	23	23	19	21	5	9	10
g	11	11	7	7	8	20	23	0	21	19	2	29	3	3	24	3	28	5	4	8	4	16	11	13
t	4	3	2	2	3	0	0	2	2	5	0	1	4	0	3	2	0	1	2	3	3	3	2	3
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m6_rc.png
;
a	27	9	7	17	15	2	8	2	5	13	0	9	77	6	7	13	7	19	26
c	33	48	86	66	84	13	15	115	15	21	116	10	16	102	8	85	94	35	31
g	40	47	27	29	20	98	92	5	106	82	6	104	22	12	107	14	17	50	35
t	26	22	6	14	7	13	11	4	0	10	4	3	11	6	4	14	8	22	34
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m7_rc.png
;
a	3	4	7	1	4	3	3	3	13	0	1	3	2	0	3	0	0	0	2	14	0	5	4
c	10	8	8	5	13	4	15	2	3	21	1	4	17	4	18	3	1	23	2	8	5	10	7
g	7	7	4	15	6	16	4	18	4	2	22	17	2	20	2	20	22	0	20	1	14	8	9
t	4	5	5	3	1	1	2	1	4	1	0	0	3	0	1	1	1	1	0	1	5	1	4
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m8_rc.png
;
a	13	5	4	3	4	1	6	2	3	6	1	2	5	0	23	4	3	5	6	6	12
c	13	17	27	33	36	2	7	49	4	11	44	5	44	5	10	31	40	5	36	21	17
g	18	24	14	12	8	49	37	1	43	34	5	44	1	46	16	7	5	39	5	17	13
t	9	7	8	5	5	1	3	1	3	2	3	2	3	2	4	11	5	4	6	9	11
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m9_rc.png
;
a	9	12	3	2	4	3	5	1	0	2	1	2	3	1	2	2	22	3	8	7
c	9	9	25	9	11	4	5	33	4	2	35	5	4	8	33	4	12	6	13	11
g	18	14	10	25	22	29	28	4	34	32	1	31	30	27	2	32	4	25	12	8
t	3	4	1	3	2	3	1	1	1	3	2	1	2	3	2	1	1	5	6	13
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m10_rc.png
;
a	9	10	0	0	0	0	0	0	18	14
c	24	25	79	0	0	0	79	79	23	15
g	18	30	0	0	79	79	0	0	23	24
t	28	14	0	79	0	0	0	0	15	26
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m11_rc.png
;
a	14	8	11	21	5	2	3	0	2	4	1	5	3	1	2	4	2	4	9	5	15
c	21	17	28	14	10	5	44	51	4	42	50	5	47	5	39	43	7	9	16	29	14
g	11	20	11	9	40	47	4	4	47	8	5	41	4	45	12	5	43	41	20	16	21
t	10	11	6	12	1	2	5	1	3	2	0	5	2	5	3	4	4	2	11	6	6
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m12.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m12_rc.png
;
a	5	3	1	1	1	1	4	0	0	4	1	0	3	2	0	2	1	0	4	3	0	2	0	0	5	4	3	2
c	6	5	11	11	18	0	4	21	5	1	19	2	13	16	18	3	13	2	14	16	2	16	19	5	3	6	10	7
g	6	8	7	6	2	20	10	1	17	13	2	20	6	4	3	16	5	19	1	1	20	2	1	17	10	11	9	7
t	5	6	3	4	1	1	4	0	0	4	0	0	0	0	1	1	3	1	3	2	0	2	2	0	4	1	0	6
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m13.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m13_rc.png
;
a	3	0	0	1	1	1	0	1	0	0	0	0	1	1	2	0	1	1	0	2	1	0	2	1	0	0	0	1
c	2	0	6	3	4	2	1	6	1	5	1	1	6	1	1	5	4	6	0	4	3	1	4	5	6	0	4	2
g	2	4	1	3	2	4	5	0	5	1	4	6	0	5	3	1	2	0	7	1	2	6	1	1	1	7	1	3
t	0	3	0	0	0	0	1	0	1	1	2	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	2	1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m14.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m14_rc.png
;
a	12	5	5	8	5	4	1	1	0	2	6	3	3	4	3	4	6	2	4	6	6	14
c	13	19	33	25	33	14	3	41	46	2	35	42	6	40	5	39	33	8	8	10	23	12
g	12	17	9	11	6	33	42	4	4	46	5	6	37	4	39	3	8	38	36	29	15	21
t	14	10	4	7	7	0	5	5	1	1	5	0	5	3	4	5	4	3	3	6	7	4
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m15.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m15_rc.png
;
a	13	15	0	0	73	0	0	0	6	16
c	11	19	73	0	0	0	0	73	19	13
g	39	25	0	73	0	73	73	0	39	24
t	10	14	0	0	0	0	0	0	9	20
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m16.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m16_rc.png
;
a	1	1	2	2	1	1	2	0	0	2	1	1	0	0	2	2	1	1	0	1	3	3	4	3
c	8	5	7	8	11	2	2	15	3	2	13	0	15	2	10	11	0	11	13	3	3	4	6	4
g	4	6	4	3	3	13	11	0	11	10	2	15	0	13	2	3	15	2	2	11	8	7	5	8
t	3	4	3	3	1	0	1	1	2	2	0	0	1	1	2	0	0	2	1	1	2	2	1	1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m17.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m17_rc.png
;
a	7	3	1	3	0	1	4	2	3	7	0	1	2	1	2	4	1	3	16	0	1	6	2	5	8
c	10	14	17	18	21	7	4	23	2	19	5	5	26	3	1	21	25	3	8	26	2	20	18	8	7
g	6	9	7	9	8	20	21	0	22	1	25	21	1	23	25	4	4	22	2	1	27	3	5	14	7
t	7	4	5	0	1	2	1	5	3	3	0	3	1	3	2	1	0	2	4	3	0	1	5	3	8
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m18.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m18_rc.png
;
a	5	4	3	1	2	2	2	0	0	4	0	1	4	0	14	3	3	18	2	6
c	10	7	16	17	18	1	3	21	4	3	21	2	19	2	2	19	3	3	9	9
g	5	13	6	6	5	23	21	2	21	19	5	22	1	24	10	1	18	3	6	10
t	6	2	1	2	1	0	0	3	1	0	0	1	2	0	0	3	2	2	9	1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m19.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m19_rc.png
;
a	5	4	9	2	0	2	0	0	2	1	3	3	1	0	21	4	3	4	3	3	9
c	20	13	17	8	38	1	36	32	3	34	6	29	34	4	8	27	27	7	26	16	9
g	9	18	8	8	1	37	3	8	32	4	30	2	2	36	7	4	9	23	6	15	13
t	6	5	6	22	1	0	1	0	3	1	1	6	3	0	4	5	1	6	5	6	9
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m20.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/04//oligo-analysis_2025-11-04.100824_IwRQlR_pssm_count_matrices_logo_m20_rc.png
;
; Host name	rsat
; Job started	2025-11-04.100839
; Job done	2025-11-04.100845
; Seconds	0.24
;	user	0.24
;	system	0.21
;	cuser	5.37
;	csystem	0.72