peak-motifs UP

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=2.58; evalue=0.0026

caCACACACac

GTGTGTGTGTG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor caCACACACac

KLF9 MA1107.3 D 11 1.0000 0.744 0.744 NA NA

MSANTD3 MA1523.2 D 7 0.6364 0.744 0.474 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 266 (42.70%)
Max nb of predicted sites per peak: 63
(FP0000962010009K17Rik_1:+UEU:NC;range-1000to1.)
Mean nb of predicted sites per peak: 9.05

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=0.72; evalue=0.19

skCTGTGAsk

MSTCACAGMS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor skCTGTGAsk

GFI1 MA0038.3 R 10 0.9091 0.709 0.645 NA NA

Zfp809 MA2125.1 R 9 0.9000 0.703 0.632 NA NA

Gfi1B MA0483.2 R 9 0.8182 0.712 0.582 NA NA

Total matches= 10 (7 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 319 (51.20%)
Max nb of predicted sites per peak: 5
(FP000554Cd200r2_1:+UEU:NC;range-1000to1.)
Mean nb of predicted sites per peak: 1.45

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=0.60; evalue=0.25

rrGAAAGAra

TYTCTTTCYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrGAAAGAra

PRDM1 MA0508.4 R 7 0.7000 0.894 0.626 NA NA

ZNF184 MA2120.1 D 10 0.7692 0.790 0.608 NA NA

Nfatc1 MA0624.3 D 6 0.6000 0.792 0.475 NA NA

Total matches= 9 (6 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 292 (46.87%)
Max nb of predicted sites per peak: 20
(FP000208Sdk1_2)
Mean nb of predicted sites per peak: 1.98

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=0.59; evalue=0.26

rrGAGAAAgr

YCTTTCTCYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrGAGAAAgr

PRDM1 MA0508.4 R 7 0.7000 0.940 0.658 NA NA

Stat2 MA1623.2 D 8 0.6667 0.722 0.482 NA NA

Stat6 MA0520.2 D 7 0.5385 0.846 0.456 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 341 (54.74%)
Max nb of predicted sites per peak: 5
(FP000585Ccdc178_1:+UEU:NC;range-1000to1.)
Mean nb of predicted sites per peak: 1.64

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=0.56; evalue=0.28

akAGATCAyr

YRTGATCTMT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor akAGATCAyr

TCF7L1 MA1421.1 D 10 0.8333 0.791 0.659 NA NA

Gata3 MA0037.5 R 8 0.8000 0.740 0.592 NA NA

TRPS1 MA1970.2 R 8 0.8000 0.731 0.585 NA NA

Total matches= 21 (18 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 143 (22.95%)
Max nb of predicted sites per peak: 2
(FP000604Dntt_1)
Mean nb of predicted sites per peak: 1.13

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_7nt_test_vs_ctrl_m1

k-mer sig=2.17; evalue=0.0068

dwATTCAGAww

WWTCTGAATWH

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor dwATTCAGAww

LIN54 MA0619.2 R 7 0.6364 0.732 0.466 NA NA

HAND2 MA1638.2 D 6 0.5455 0.815 0.445 NA NA

NEUROG2 MA1642.2 D 6 0.5000 0.802 0.401 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 137 (21.99%)
Max nb of predicted sites per peak: 3
(FP000308Spata4_1)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_test_vs_ctrl_m2

k-mer sig=1.32; evalue=0.048

ayAGAGACAsa

TSTGTCTCTRT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ayAGAGACAsa

Prdm14 MA1998.2 R 8 0.7273 0.759 0.552 NA NA

PRDM1 MA0508.4 R 7 0.6364 0.727 0.463 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 187 (30.02%)
Max nb of predicted sites per peak: 14
(FP000387Nmur2_1)
Mean nb of predicted sites per peak: 1.58

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_test_vs_ctrl_m3

k-mer sig=1.25; evalue=0.056

rvAATGGCCTbk

MVAGGCCATTBY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rvAATGGCCTbk

NFYB MA0502.3 D 9 0.7500 0.764 0.573 NA NA

THAP1 MA0597.3 R 8 0.6667 0.738 0.492 NA NA

Isl1 MA1608.2 R 7 0.5833 0.842 0.491 NA NA

Total matches= 24 (21 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 53 (8.51%)
Max nb of predicted sites per peak: 2
(FP000316Palm3_1)
Mean nb of predicted sites per peak: 1.04

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_test_vs_ctrl_m4

k-mer sig=0.81; evalue=0.15

syAGGCTCAsr

YSTGAGCCTRS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor syAGGCTCAsr

ZBTB6 MA1581.2 R 8 0.6667 0.835 0.557 NA NA

RHOXF1 MA0719.2 R 6 0.5455 0.789 0.430 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 152 (24.40%)
Max nb of predicted sites per peak: 2
(FP000621Cldn2_1)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_test_vs_ctrl_m5

k-mer sig=0.64; evalue=0.23

dwAACTGCTdw

WHAGCAGTTWH

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor dwAACTGCTdw

MAFF MA0495.4 R 10 0.8333 0.740 0.616 NA NA

NRL MA0842.3 D 10 0.7692 0.704 0.541 NA NA

Tcf21 MA0832.2 D 9 0.7500 0.714 0.535 NA NA

Total matches= 9 (6 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 112 (17.98%)
Max nb of predicted sites per peak: 3
(FP000611Prr32_1)
Mean nb of predicted sites per peak: 1.10

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_8nt_test_vs_ctrl_m1

k-mer sig=1.99; evalue=0.01

rvAATGGCCTbk

MVAGGCCATTBY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rvAATGGCCTbk

NFYB MA0502.3 D 9 0.7500 0.763 0.572 NA NA

THAP1 MA0597.3 R 8 0.6667 0.740 0.493 NA NA

Isl1 MA1608.2 R 7 0.5833 0.840 0.490 NA NA

Total matches= 24 (21 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 50 (8.03%)
Max nb of predicted sites per peak: 2
(FP000316Palm3_1)
Mean nb of predicted sites per peak: 1.04

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_8nt_test_vs_ctrl_m2

k-mer sig=1.37; evalue=0.043

tmwCCATTGAGah

DTCTCAATGGWKA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tmwCCATTGAGah

Nfatc2 MA0152.3 R 8 0.6154 0.764 0.470 NA NA

NKX2-5 MA0063.3 R 7 0.5385 0.792 0.427 NA NA

SOX2 MA0143.5 R 7 0.5385 0.763 0.411 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 82 (13.16%)
Max nb of predicted sites per peak: 3
(FP000599Ms4a8a_1)
Mean nb of predicted sites per peak: 1.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_8nt_test_vs_ctrl_m3

k-mer sig=0.95; evalue=0.11

ycCATCCATCyh

DRGATGGATGGR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ycCATCCATCyh

MEIS1 MA1639.2 D 9 0.7500 0.739 0.554 NA NA

PBX1 MA0070.2 D 9 0.7500 0.737 0.553 NA NA

Atoh1 MA1467.3 R 7 0.5833 0.814 0.475 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 97 (15.57%)
Max nb of predicted sites per peak: 37
(FP000200Ccl24_1)
Mean nb of predicted sites per peak: 1.60

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_8nt_test_vs_ctrl_m4

k-mer sig=0.88; evalue=0.13

ssAGGGCCTAgr

YCTAGGCCCTSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssAGGGCCTAgr

ZNF692 MA1986.2 D 8 0.6667 0.772 0.515 NA NA

Zfx MA0146.3 D 9 0.6923 0.728 0.504 NA NA

THAP1 MA0597.3 D 8 0.6667 0.746 0.497 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 37 (5.94%)
Max nb of predicted sites per peak: 2
(FP000232Slc4a5_2)
Mean nb of predicted sites per peak: 1.03

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_8nt_test_vs_ctrl_m5

k-mer sig=0.38; evalue=0.42

mmACCTCAAChy

RDGTTGAGGTKK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mmACCTCAAChy

RUNX3 MA0684.3 D 8 0.6667 0.943 0.629 NA NA

RUNX2 MA0511.2 D 9 0.7500 0.785 0.589 NA NA

Bcl11B MA1989.2 D 9 0.7500 0.739 0.554 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 83 (13.32%)
Max nb of predicted sites per peak: 2
(FP000340Cd3e_1)
Mean nb of predicted sites per peak: 1.05

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus JASPAR2024_CORE_vertebrates_non-redundant database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: UP (04/11/2025 10:53)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor caCACACACac

KLF9 MA1107.3 D 11 1.0000 0.744 0.744 NA NA

MSANTD3 MA1523.2 D 7 0.6364 0.744 0.474 NA NA

Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ayAGAGACAsa

Prdm14 MA1998.2 R 8 0.7273 0.759 0.552 NA NA

PRDM1 MA0508.4 R 7 0.6364 0.727 0.463 NA NA

Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor syAGGCTCAsr

ZBTB6 MA1581.2 R 8 0.6667 0.835 0.557 NA NA

RHOXF1 MA0719.2 R 6 0.5455 0.789 0.430 NA NA

Total matches= 2

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: UP (04/11/2025 10:53)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor caCACACACac KLF9 MA1107.3 D 11 1.0000 0.744 0.744 NA NA MSANTD3 MA1523.2 D 7 0.6364 0.744 0.474 NA NA Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ayAGAGACAsa Prdm14 MA1998.2 R 8 0.7273 0.759 0.552 NA NA PRDM1 MA0508.4 R 7 0.6364 0.727 0.463 NA NA Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor syAGGCTCAsr ZBTB6 MA1581.2 R 8 0.6667 0.835 0.557 NA NA RHOXF1 MA0719.2 R 6 0.5455 0.789 0.430 NA NA Total matches= 2

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor caCACACACac

KLF9 MA1107.3 D 11 1.0000 0.744 0.744 NA NA

MSANTD3 MA1523.2 D 7 0.6364 0.744 0.474 NA NA

Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ayAGAGACAsa

Prdm14 MA1998.2 R 8 0.7273 0.759 0.552 NA NA

PRDM1 MA0508.4 R 7 0.6364 0.727 0.463 NA NA

Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor syAGGCTCAsr

ZBTB6 MA1581.2 R 8 0.6667 0.835 0.557 NA NA

RHOXF1 MA0719.2 R 6 0.5455 0.789 0.430 NA NA

Total matches= 2