peak-motifs DOWN

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=7.61; evalue=2.5e-08

grctCAGGAAgrr

YYCTTCCTGAGYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grctCAGGAAgrr

Erg MA0474.4 D 10 0.7692 0.873 0.672 NA NA

ETV2::FOXI1 MA1942.2 D 11 0.8462 0.779 0.659 NA NA

GABPA MA0062.4 R 10 0.7692 0.856 0.658 NA NA

Total matches= 36 (33 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 190 (20.00%)
Max nb of predicted sites per peak: 4
(FP0002824930467D21Rik_1)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=6.20; evalue=6.3e-07

aymCACATGGAtaya

TRTATCCATGTGKRT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor aymCACATGGAtaya

TFAP4 MA1570.1 R 10 0.6667 0.710 0.474 NA NA

BHLHA15 MA0607.2 D 10 0.6667 0.707 0.472 NA NA

TCF21 MA1568.2 R 10 0.6667 0.706 0.471 NA NA

Total matches= 10 (7 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 269 (28.32%)
Max nb of predicted sites per peak: 45
(FP000938Gpr174_2)
Mean nb of predicted sites per peak: 2.41

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=6.07; evalue=8.5e-07

rrAGAAGAATGcww

WWGCATTCTTCTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrAGAAGAATGcww

ZNF680 MA1729.2 D 10 0.6667 0.892 0.595 NA NA

Sox7 MA2095.1 D 10 0.7143 0.761 0.543 NA NA

Sox17 MA0078.3 D 10 0.7143 0.753 0.538 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 181 (19.05%)
Max nb of predicted sites per peak: 4
(FP000534Arg1_1)
Mean nb of predicted sites per peak: 1.10

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=6.20; evalue=6.3e-07

sacAgAgACATrGAtaba

TVTATCYATGTCTCTGTS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sacAgAgACATrGAtaba

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 299 (31.47%)
Max nb of predicted sites per peak: 82
(FP000274Tecrl_1)
Mean nb of predicted sites per peak: 4.07

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=5.13; evalue=7.4e-06

wwAAACATTAaww

WWTTAATGTTTWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwAAACATTAaww

BARX2 MA1471.2 D 9 0.6923 0.794 0.550 NA NA

FOXA1 MA0148.5 D 8 0.6154 0.859 0.529 NA NA

Foxq1 MA0040.2 R 9 0.6429 0.816 0.525 NA NA

Total matches= 29 (26 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 311 (32.74%)
Max nb of predicted sites per peak: 6
(FP000284Gm17660_1)
Mean nb of predicted sites per peak: 1.49

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_7nt_test_vs_ctrl_m1

k-mer sig=3.92; evalue=0.00012

awAcATAaAaAtaw

WTATTTTTATGTWT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor awAcATAaAaAtaw

MEF2A MA0052.5 D 10 0.7143 0.760 0.543 NA NA

Hmga1 MA2124.1 R 8 0.5714 0.924 0.528 NA NA

MEF2C MA0497.2 D 10 0.6667 0.726 0.484 NA NA

Total matches= 11 (8 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 460 (48.42%)
Max nb of predicted sites per peak: 83
(FP000938Gpr174_2)
Mean nb of predicted sites per peak: 4.29

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_test_vs_ctrl_m2

k-mer sig=3.91; evalue=0.00012

wwwaGAAGAAAaa

TTTTTCTTCTWWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwwaGAAGAAAaa

ZNF384 MA1125.2 D 8 0.6154 0.769 0.473 NA NA

ZNF766 MA2098.1 D 8 0.5714 0.804 0.459 NA NA

Sox11 MA0869.3 D 8 0.6154 0.738 0.454 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 271 (28.53%)
Max nb of predicted sites per peak: 5
(FP000465Nanos3_1)
Mean nb of predicted sites per peak: 1.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_test_vs_ctrl_m3

k-mer sig=3.80; evalue=0.00016

wwGCATTGAwh

DWTCAATGCWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwGCATTGAwh

ONECUT1 MA0679.3 R 8 0.6667 0.745 0.496 NA NA

TCF7 MA0769.3 D 7 0.6364 0.742 0.472 NA NA

Arid3b MA0601.2 R 7 0.6364 0.722 0.460 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 99 (10.42%)
Max nb of predicted sites per peak: 2
(FP000667Hist1h2bn_1)
Mean nb of predicted sites per peak: 1.05

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_test_vs_ctrl_m4

k-mer sig=3.71; evalue=0.00019

wwTAAACATTAAww

WWTTAATGTTTAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwTAAACATTAAww

HNF1A MA0046.3 D 13 0.9286 0.733 0.680 NA NA

HNF1B MA0153.2 D 13 0.9286 0.721 0.669 NA NA

Foxq1 MA0040.2 R 10 0.7143 0.873 0.623 NA NA

Total matches= 38 (35 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 350 (36.84%)
Max nb of predicted sites per peak: 40
(FP000938Gpr174_2)
Mean nb of predicted sites per peak: 2.07

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_test_vs_ctrl_m5

k-mer sig=3.49; evalue=0.00032

rvACAGGAAGrr

YYCTTCCTGTBY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rvACAGGAAGrr

ETV2::FOXI1 MA1942.2 D 11 0.9167 0.912 0.836 NA NA

FOXJ2::ELF1 MA1952.2 D 11 0.9167 0.886 0.812 NA NA

Erg MA0474.4 D 10 0.8333 0.933 0.778 NA NA

Total matches= 49 (46 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 144 (15.16%)
Max nb of predicted sites per peak: 3
(FP000450Adam3_1)
Mean nb of predicted sites per peak: 1.13

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_8nt_test_vs_ctrl_m1

k-mer sig=4.91; evalue=1.2e-05

adrAAGAAATGaa

TTCATTTCTTYHT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor adrAAGAAATGaa

Stat2 MA1623.2 D 9 0.6429 0.715 0.460 NA NA

Stat5a MA1624.2 D 8 0.5714 0.700 0.400 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 253 (26.63%)
Max nb of predicted sites per peak: 5
(FP000515Gadl1_1)
Mean nb of predicted sites per peak: 1.26

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_8nt_test_vs_ctrl_m2

k-mer sig=4.35; evalue=4.5e-05

wdaGCATTGAAmwh

DWKTTCAATGCTHW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wdaGCATTGAAmwh

Vdr MA0693.4 R 7 0.5000 0.822 0.411 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 128 (13.47%)
Max nb of predicted sites per peak: 2
(FP000902Cpn1_2)
Mean nb of predicted sites per peak: 1.09

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_8nt_test_vs_ctrl_m3

k-mer sig=3.15; evalue=0.00071

atATAcATAkat

ATMTATGTATAT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atATAcATAkat

DMRT3 MA0610.2 R 7 0.5833 0.769 0.449 NA NA

TBP MA0108.3 D 7 0.5833 0.752 0.439 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 335 (35.26%)
Max nb of predicted sites per peak: 89
(FP000274Tecrl_1)
Mean nb of predicted sites per peak: 3.91

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_8nt_test_vs_ctrl_m4

k-mer sig=2.57; evalue=0.0027

avAATGGCCCws

SWGGGCCATTBT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor avAATGGCCCws

Plagl1 MA1615.2 R 8 0.6667 0.875 0.583 NA NA

NFYB MA0502.3 D 9 0.7500 0.772 0.579 NA NA

ZNF692 MA1986.2 D 8 0.6667 0.787 0.525 NA NA

Total matches= 17 (14 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 64 (6.74%)
Max nb of predicted sites per peak: 2
(FP000902Cpn1_2)
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_8nt_test_vs_ctrl_m5

k-mer sig=2.48; evalue=0.0033

waAATGTTTAww

WWTAAACATTTW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor waAATGTTTAww

Foxq1 MA0040.2 D 10 0.8333 0.866 0.722 NA NA

FOXF2 MA0030.2 R 9 0.7500 0.824 0.618 NA NA

FOXA1 MA0148.5 R 8 0.6667 0.923 0.615 NA NA

Total matches= 38 (35 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 310 (32.63%)
Max nb of predicted sites per peak: 7
(FP000795Ostn_2)
Mean nb of predicted sites per peak: 1.46

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus JASPAR2024_CORE_vertebrates_non-redundant database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: DOWN (04/11/2025 11:31)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sacAgAgACATrGAtaba

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor adrAAGAAATGaa

Stat2 MA1623.2 D 9 0.6429 0.715 0.460 NA NA

Stat5a MA1624.2 D 8 0.5714 0.700 0.400 NA NA

Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wdaGCATTGAAmwh

Vdr MA0693.4 R 7 0.5000 0.822 0.411 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atATAcATAkat

DMRT3 MA0610.2 R 7 0.5833 0.769 0.449 NA NA

TBP MA0108.3 D 7 0.5833 0.752 0.439 NA NA

Total matches= 2

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: DOWN (04/11/2025 11:31)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor sacAgAgACATrGAtaba Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor adrAAGAAATGaa Stat2 MA1623.2 D 9 0.6429 0.715 0.460 NA NA Stat5a MA1624.2 D 8 0.5714 0.700 0.400 NA NA Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wdaGCATTGAAmwh Vdr MA0693.4 R 7 0.5000 0.822 0.411 NA NA Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor atATAcATAkat DMRT3 MA0610.2 R 7 0.5833 0.769 0.449 NA NA TBP MA0108.3 D 7 0.5833 0.752 0.439 NA NA Total matches= 2

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sacAgAgACATrGAtaba

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor adrAAGAAATGaa

Stat2 MA1623.2 D 9 0.6429 0.715 0.460 NA NA

Stat5a MA1624.2 D 8 0.5714 0.700 0.400 NA NA

Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wdaGCATTGAAmwh

Vdr MA0693.4 R 7 0.5000 0.822 0.411 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atATAcATAkat

DMRT3 MA0610.2 R 7 0.5833 0.769 0.449 NA NA

TBP MA0108.3 D 7 0.5833 0.752 0.439 NA NA

Total matches= 2