peak-motifs FNR

motif discovery

oligos_6nt_mkv3

oligos_6nt_mkv3_m1	assembly: acaaaa (sig=1.40; e-value=0.04)	RC: ttttgt
oligos_6nt_mkv3_m2	assembly: ggtaga (sig=0.99; e-value=0.1)	RC: tctacc
oligos_6nt_mkv3_m3	assembly: tccaga (sig=0.61; e-value=0.25)	RC: tctgga
oligos_6nt_mkv3_m4	assembly: agataa (sig=0.45; e-value=0.35)	RC: ttatct
oligos_6nt_mkv3_m5	assembly: gagcta (sig=0.36; e-value=0.44)	RC: tagctc

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_6nt

positions_6nt_m1	assembly: caaaaaat (sig=21.18; e-value=6.6e-22)	RC: attttttg
positions_6nt_m2	assembly: caaaaaag (sig=21.18; e-value=6.6e-22)	RC: cttttttg
positions_6nt_m3	assembly: taaaaaat (sig=21.18; e-value=6.6e-22)	RC: atttttta
positions_6nt_m4	assembly: gaaaaaat (sig=21.18; e-value=6.6e-22)	RC: attttttc
positions_6nt_m5	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

oligos_7nt_mkv4

oligos_7nt_mkv4_m1	assembly: ggttcga (sig=4.16; e-value=6.9e-05)	RC: tcgaacc
oligos_7nt_mkv4_m2	assembly: cgaatcc (sig=1.33; e-value=0.047)	RC: ggattcg
oligos_7nt_mkv4_m3	assembly: tagctcag (sig=1.25; e-value=0.056)	RC: ctgagcta
oligos_7nt_mkv4_m4	assembly: agcgcct (sig=0.40; e-value=0.4)	RC: aggcgct
oligos_7nt_mkv4_m5	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_7nt

Not a single significant pattern

[positions_7nt]

dyads

dyads_m1	assembly: ttgatgtacatcaa (sig=17.75; e-value=1.8e-18)	RC: ttgatgtacatcaa
dyads_m2	assembly: agaaaaatg (sig=10.51; e-value=3.1e-11)	RC: catttttct
dyads_m3	assembly: acaaaatg (sig=8.43; e-value=3.7e-09)	RC: cattttgt
dyads_m4	assembly: ttgccagct (sig=8.33; e-value=4.7e-09)	RC: agctggcaa
dyads_m5	assembly: ttgccagat (sig=8.18; e-value=6.6e-09)	RC: atctggcaa

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

Motif discovery

Motif 1 oligos_6nt_mkv3_m1

k-mer sig=1.40; evalue=0.04

ayACAAAArk

MYTTTTGTRT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 46 (14.07%)
Max nb of predicted sites per peak: 56
(gi|49175990|ref|NC_000913.2|:3421279-3427122)
Mean nb of predicted sites per peak: 5.39

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv3_m2

k-mer sig=0.99; evalue=0.1

vgGGTAGagm

KCTCTACCCB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 47 (14.37%)
Max nb of predicted sites per peak: 70
(gi|49175990|ref|NC_000913.2|:3421279-3427122)
Mean nb of predicted sites per peak: 9.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv3_m3

k-mer sig=0.61; evalue=0.25

gcTCCAGAyt

ARTCTGGAGC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 53 (16.21%)
Max nb of predicted sites per peak: 78
(gi|49175990|ref|NC_000913.2|:4164306-4169931)
Mean nb of predicted sites per peak: 9.43

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv3_m4

k-mer sig=0.45; evalue=0.35

asAGATAArw

WYTTATCTST

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 54 (16.51%)
Max nb of predicted sites per peak: 28
(gi|49175990|ref|NC_000913.2|:3421279-3427122)
Mean nb of predicted sites per peak: 3.93

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv3_m5

k-mer sig=0.36; evalue=0.44

skGAGCTAhy

RDTAGCTCMS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 34 (10.40%)
Max nb of predicted sites per peak: 98
(gi|49175990|ref|NC_000913.2|:3421279-3427122)
Mean nb of predicted sites per peak: 15.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=21.18; evalue=6.6e-22

rdCAAAAAATkm

KMATTTTTTGHY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 30 (9.17%)
Max nb of predicted sites per peak: 52
(gi|49175990|ref|NC_000913.2|:4164306-4169931)
Mean nb of predicted sites per peak: 10.30

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=21.18; evalue=6.6e-22

vgCAAAAAAGca

TGCTTTTTTGCB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 34 (10.40%)
Max nb of predicted sites per peak: 39
(gi|49175990|ref|NC_000913.2|:4164306-4169931)
Mean nb of predicted sites per peak: 6.97

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=21.18; evalue=6.6e-22

stTaAAAAATym

KRATTTTTTAAS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 35 (10.70%)
Max nb of predicted sites per peak: 42
(gi|49175990|ref|NC_000913.2|:3421279-3427122)
Mean nb of predicted sites per peak: 6.69

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

k-mer sig=21.18; evalue=6.6e-22

wwGAAAAAATas

STATTTTTTCWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 29 (8.87%)
Max nb of predicted sites per peak: 28
(gi|49175990|ref|NC_000913.2|:3421279-3427122)
Mean nb of predicted sites per peak: 5.83

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_mkv4_m1

k-mer sig=4.16; evalue=6.9e-05

ssGGTTCGAhy

RDTCGAACCSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 29 (8.87%)
Max nb of predicted sites per peak: 77
(gi|49175990|ref|NC_000913.2|:223424-229111)
Mean nb of predicted sites per peak: 18.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv4_m2

k-mer sig=1.33; evalue=0.047

wkCGAATCCsk

MSGGATTCGMW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 26 (7.95%)
Max nb of predicted sites per peak: 52
(gi|49175990|ref|NC_000913.2|:4164306-4169931)
Mean nb of predicted sites per peak: 13.42

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv4_m3

k-mer sig=1.25; evalue=0.056

gwTAGCTCAGbk

MVCTGAGCTAWC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 30 (9.17%)
Max nb of predicted sites per peak: 98
(gi|49175990|ref|NC_000913.2|:3421279-3427122)
Mean nb of predicted sites per peak: 16.10

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv4_m4

k-mer sig=0.40; evalue=0.4

smAGCGCCTgs

SCAGGCGCTKS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 42 (12.84%)
Max nb of predicted sites per peak: 84
(gi|49175990|ref|NC_000913.2|:3421279-3427122)
Mean nb of predicted sites per peak: 10.98

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 dyads_m1

k-mer sig=17.75; evalue=1.8e-18

wwtTGAtstasATCAaww

WWTTGATSTASATCAAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 64 (19.57%)
Max nb of predicted sites per peak: 12
(gi|49175990|ref|NC_000913.2|:3655506-3656662)
Mean nb of predicted sites per peak: 2.70

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 dyads_m2

k-mer sig=10.51; evalue=3.1e-11

rmaGAAAAATGma

TKCATTTTTCTKY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 30 (9.17%)
Max nb of predicted sites per peak: 55
(gi|49175990|ref|NC_000913.2|:2723910-2729596)
Mean nb of predicted sites per peak: 11.10

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 dyads_m3

k-mer sig=8.43; evalue=3.7e-09

wsACAAAAkGkw

WMCMTTTTGTSW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 39 (11.93%)
Max nb of predicted sites per peak: 56
(gi|49175990|ref|NC_000913.2|:3421279-3427122)
Mean nb of predicted sites per peak: 7.90

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 dyads_m4

k-mer sig=8.33; evalue=4.7e-09

tstTGCCAGCrGc

GCYGCTGGCAASA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 34 (10.40%)
Max nb of predicted sites per peak: 72
(gi|49175990|ref|NC_000913.2|:3939453-3945193)
Mean nb of predicted sites per peak: 13.62

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 dyads_m5

k-mer sig=8.18; evalue=6.6e-09

gyTTSCCAGamwy

RWKTCTGGSAARC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 30 (9.17%)
Max nb of predicted sites per peak: 60
(gi|49175990|ref|NC_000913.2|:3939453-3945193)
Mean nb of predicted sites per peak: 11.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: FNR (04/11/2025 12:16)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results