; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2025/11/07/oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/11/07/oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/11/07/oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2025/11/07/oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2025/11/07/oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 46 49 65 104 117 1 127 132 127 129 20 47 69 55
c 25 27 19 7 7 115 4 2 1 1 94 38 22 19
g 27 21 14 7 1 12 1 1 5 2 9 22 12 22
t 37 38 37 17 10 7 3 0 2 3 12 28 32 39
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m1_rc.png
;
a 45 36 7 92 89 8 93 87 10 91 41 33
c 12 11 4 2 1 3 1 5 1 2 20 9
g 18 14 79 2 4 79 3 1 83 2 18 29
t 22 36 7 1 3 7 0 4 3 2 18 26
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m2_rc.png
;
a 19 23 3 48 4 54 1 12 5 55 4 14 18 29
c 5 9 5 1 4 0 0 1 38 0 1 2 6 8
g 6 11 3 3 2 1 0 43 2 2 1 38 13 6
t 29 16 48 7 49 4 58 3 14 2 53 5 22 16
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m3_rc.png
;
a 143 137 343 345 0 355 347 327 334 134 133
c 75 71 5 6 53 8 15 10 14 77 57
g 50 70 18 17 297 10 9 32 17 59 86
t 115 105 17 15 33 10 12 14 18 113 107
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m4_rc.png
;
a 3 2 1 0 0 0 0 0 1 5 5
c 4 2 17 0 0 17 0 0 17 3 2
g 3 7 0 1 17 0 0 14 0 2 3
t 9 8 1 18 2 2 19 5 1 9 9
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m5_rc.png
;
a 11 7 1 1 1 0 0 0 0 25 9 7
c 2 6 1 1 2 0 0 0 1 0 1 5
g 8 1 27 1 25 0 23 0 29 1 5 5
t 9 16 1 27 2 30 7 30 0 4 15 13
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m6_rc.png
;
a 72 73 121 117 159 7 163 174 170 162 22 109 127 76 80
c 27 36 15 22 11 148 11 3 4 5 131 24 15 29 31
g 34 26 15 16 1 17 4 2 6 6 12 23 11 29 24
t 51 49 33 29 13 12 6 5 4 11 19 28 31 50 49
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m7_rc.png
;
a 44 57 130 127 4 17 132 8 15 49 51
c 33 31 10 7 2 120 3 6 115 23 19
g 21 16 0 5 4 3 6 5 3 16 24
t 47 41 5 6 135 5 4 126 12 57 51
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m8_rc.png
;
a 23 21 59 59 59 0 0 59 25 28
c 11 7 0 0 0 59 0 0 10 7
g 9 12 0 0 0 0 0 0 7 7
t 16 19 0 0 0 0 59 0 17 17
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m9_rc.png
;
a 15 12 32 0 32 0 32 0 16 5
c 4 5 0 0 0 0 0 0 5 7
g 5 7 0 32 0 32 0 32 3 7
t 8 8 0 0 0 0 0 0 8 13
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m10_rc.png
;
a 7 7 1 15 16 1 2 16 1 1 8 7
c 1 3 0 1 0 0 12 0 2 15 4 4
g 2 4 15 0 0 14 1 0 13 0 2 3
t 6 2 0 0 0 1 1 0 0 0 2 2
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m11_rc.png
;
a 24 29 5 61 1 60 3 59 6 61 27 23
c 7 11 51 0 1 0 0 2 45 0 8 11
g 9 13 1 1 1 0 1 0 1 2 4 9
t 24 11 7 2 61 4 60 3 12 1 25 21
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m12.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m12_rc.png
;
a 29 32 72 0 0 72 72 72 30 23
c 15 13 0 0 72 0 0 0 14 16
g 6 11 0 0 0 0 0 0 9 15
t 22 16 0 72 0 0 0 0 19 18
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m13.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m13_rc.png
;
a 7 5 0 0 0 1 12 0 0 12 6 2
c 0 2 12 0 12 1 0 0 13 0 3 4
g 3 2 1 0 0 9 1 0 0 0 1 3
t 3 4 0 13 1 2 0 13 0 1 3 4
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m14.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m14_rc.png
;
a 8 10 2 23 24 1 2 2 1 23 9 4
c 2 3 1 0 0 0 20 20 1 1 5 3
g 3 3 19 0 0 0 0 1 0 0 2 7
t 11 8 2 1 0 23 2 1 22 0 8 10
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m15.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m15_rc.png
;
a 27 40 0 94 94 94 0 94 32 36
c 12 18 0 0 0 0 0 0 8 15
g 18 12 0 0 0 0 0 0 16 12
t 37 24 94 0 0 0 94 0 38 31
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m16.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m16_rc.png
;
a 4 4 0 1 0 0 8 0 1 5 5
c 1 2 9 8 0 0 0 0 0 0 0
g 3 1 0 0 8 9 0 9 7 2 1
t 1 2 0 0 1 0 1 0 1 2 3
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m17.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07//oligo-analysis_2025-11-07.154743_MMRPak_pssm_count_matrices_logo_m17_rc.png
;
; Host name rsat
; Job started 2025-11-07.154750
; Job done 2025-11-07.154755
; Seconds 0.26
; user 0.26
; system 0.13
; cuser 4.04
; csystem 0.6