; matrix-from-patterns  -v 1 -logo -seq $RSAT/public_html/tmp/www-data/2025/11/07/retrieve-seq_2025-11-07.201129_6F0SY5.fasta.fasta -format fasta -asmb $RSAT/public_html/tmp/www-data/2025/11/07/oligo-analysis_2025-11-07.201243_50z6L0.asmb -min_weight 5 -flanks 2 -max_asmb_nb 20 -cluster none -uth Pval 0.00025 -bginput -markov 0 -o $RSAT/public_html/tmp/www-data/2025/11/07/oligo-analysis_2025-11-07.201243_50z6L0_pssm
; Input files
;	assembly	/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/oligo-analysis_2025-11-07.201243_50z6L0.asmb
;	sequence	/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/retrieve-seq_2025-11-07.201129_6F0SY5.fasta.fasta
; Output files
;	count_matrices	/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/oligo-analysis_2025-11-07.201243_50z6L0_pssm_count_matrices.txt
;	count_matrices_tf	/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/oligo-analysis_2025-11-07.201243_50z6L0_pssm_count_matrices.tf
;	links	/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/oligo-analysis_2025-11-07.201243_50z6L0_pssm_count_matrices_links.txt
;	sig_matrices	/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/oligo-analysis_2025-11-07.201243_50z6L0_pssm_sig_matrices.tf
;	log	/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/oligo-analysis_2025-11-07.201243_50z6L0_pssm_log.txt
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/oligo-analysis_2025-11-07.201243_50z6L0_pssm
;	assembly	/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/oligo-analysis_2025-11-07.201243_50z6L0.asmb
;	sig_sites	/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/oligo-analysis_2025-11-07.201243_50z6L0_pssm_sig_sites.ft
;	sig_matrices_split	/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/oligo-analysis_2025-11-07.201243_50z6L0_pssm_sig_matrices_split_matrix_list.tab
;	err	/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/oligo-analysis_2025-11-07.201243_50z6L0_pssm_err.txt
;	logo_basename	/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/oligo-analysis_2025-11-07.201243_50z6L0_pssm_count_matrices_logo
;	gibbs_matrices	/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/oligo-analysis_2025-11-07.201243_50z6L0_pssm_gibbs_matrices.txt
; Number of assemblies	0
; Number of assembled patterns	0
; Host name	rsat
; Job started	2025-11-07.201247
; Job done	2025-11-07.201247
; Seconds	0.09
;	user	0.09
;	system	0.01
;	cuser	0
;	csystem	0