compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.115850_2025-11-07.115850_AAMmDh/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.115850_2025-11-07.115850_AAMmDh/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab Program version 1.118 Quick mode Input files file2 $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.115850_2025-11-07.115850_AAMmDh/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.115850_2025-11-07.115850_AAMmDh/results/discovered_motifs/peak-motifs_motifs_discovered.tf Output files html_index $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.115850_2025-11-07.115850_AAMmDh/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html alignments_1ton_html $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.115850_2025-11-07.115850_AAMmDh/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html match_table_html $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.115850_2025-11-07.115850_AAMmDh/results/discovered_motifs/peak-motifs_motifs_disco_compa.html prefix $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.115850_2025-11-07.115850_AAMmDh/results/discovered_motifs/peak-motifs_motifs_disco_compa alignments_1ton $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.115850_2025-11-07.115850_AAMmDh/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab match_table_txt $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.115850_2025-11-07.115850_AAMmDh/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab Matrices file1 18 matrices $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.115850_2025-11-07.115850_AAMmDh/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 1 10 407 file1 2 10 655 file1 3 10 566 file1 4 10 273 file1 5 10 525 file1 6 12 782 file1 7 12 615 file1 8 12 641 file1 9 12 614 file1 10 11 1547 file1 11 11 1401 ... 8 more matrices file2 18 matrices $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.115850_2025-11-07.115850_AAMmDh/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 1 10 407 file2 2 10 655 file2 3 10 566 file2 4 10 273 file2 5 10 525 file2 6 12 782 file2 7 12 615 file2 8 12 641 file2 9 12 614 file2 10 11 1547 file2 11 11 1401 ... 8 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_6nt_mkv3_m1 | oligos_6nt_mkv3_m1 | oligos_6nt_mkv3_m1 | oligos_6nt_mkv3_m1 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m5 | dyads_m5 | dyads_m5 | dyads_m5 | 1.000 | 1.000 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m3 | dyads_m3 | dyads_m3 | dyads_m3 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv3_m2 | oligos_6nt_mkv3_m2 | oligos_6nt_mkv3_m2 | oligos_6nt_mkv3_m2 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m2 | positions_6nt_m2 | positions_6nt_m2 | positions_6nt_m2 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m4 | positions_6nt_m4 | positions_6nt_m4 | positions_6nt_m4 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv3_m4 | oligos_6nt_mkv3_m4 | oligos_6nt_mkv3_m4 | oligos_6nt_mkv3_m4 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m1 | positions_6nt_m1 | positions_6nt_m1 | positions_6nt_m1 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m4 | dyads_m4 | dyads_m4 | dyads_m4 | 1.000 | 1.000 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv4_m4 | oligos_7nt_mkv4_m4 | oligos_7nt_mkv4_m4 | oligos_7nt_mkv4_m4 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m1 | dyads_m1 | dyads_m1 | dyads_m1 | 1.000 | 1.000 | 18 | 18 | 18 | 18 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m2 | dyads_m2 | dyads_m2 | dyads_m2 | 1.000 | 1.000 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv4_m1 | oligos_7nt_mkv4_m1 | oligos_7nt_mkv4_m1 | oligos_7nt_mkv4_m1 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv3_m3 | oligos_6nt_mkv3_m3 | oligos_6nt_mkv3_m3 | oligos_6nt_mkv3_m3 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv4_m2 | oligos_7nt_mkv4_m2 | oligos_7nt_mkv4_m2 | oligos_7nt_mkv4_m2 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv3_m5 | oligos_6nt_mkv3_m5 | oligos_6nt_mkv3_m5 | oligos_6nt_mkv3_m5 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m3 | positions_6nt_m3 | positions_6nt_m3 | positions_6nt_m3 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv4_m3 | oligos_7nt_mkv4_m3 | oligos_7nt_mkv4_m3 | oligos_7nt_mkv4_m3 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m4 | positions_6nt_m3 | positions_6nt_m4 | positions_6nt_m3 | 0.860 | 0.860 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m3 | positions_6nt_m4 | positions_6nt_m3 | positions_6nt_m4 | 0.860 | 0.860 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m3 | positions_6nt_m1 | positions_6nt_m3 | positions_6nt_m1 | 0.856 | 0.856 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m1 | positions_6nt_m3 | positions_6nt_m1 | positions_6nt_m3 | 0.856 | 0.856 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m1 | positions_6nt_m4 | positions_6nt_m1 | positions_6nt_m4 | 0.846 | 0.846 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m4 | positions_6nt_m1 | positions_6nt_m4 | positions_6nt_m1 | 0.846 | 0.846 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m1 | positions_6nt_m2 | positions_6nt_m1 | positions_6nt_m2 | 0.811 | 0.811 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m2 | positions_6nt_m1 | positions_6nt_m2 | positions_6nt_m1 | 0.811 | 0.811 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv4_m3 | oligos_6nt_mkv3_m5 | oligos_7nt_mkv4_m3 | oligos_6nt_mkv3_m5 | 0.958 | 0.798 | 12 | 10 | 10 | 12 | 0.8333 | 0.8333 | 1.0000 | R | 0 |
| oligos_6nt_mkv3_m5 | oligos_7nt_mkv4_m3 | oligos_6nt_mkv3_m5 | oligos_7nt_mkv4_m3 | 0.958 | 0.798 | 10 | 12 | 10 | 12 | 0.8333 | 1.0000 | 0.8333 | R | -2 |
| dyads_m4 | dyads_m5 | dyads_m4 | dyads_m5 | 0.761 | 0.761 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m5 | dyads_m4 | dyads_m5 | dyads_m4 | 0.761 | 0.761 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m3 | dyads_m2 | positions_6nt_m3 | dyads_m2 | 0.815 | 0.752 | 12 | 13 | 12 | 13 | 0.9231 | 1.0000 | 0.9231 | D | 0 |
| dyads_m2 | positions_6nt_m3 | dyads_m2 | positions_6nt_m3 | 0.815 | 0.752 | 13 | 12 | 12 | 13 | 0.9231 | 0.9231 | 1.0000 | D | 0 |
| dyads_m3 | oligos_6nt_mkv3_m1 | dyads_m3 | oligos_6nt_mkv3_m1 | 0.884 | 0.736 | 12 | 10 | 10 | 12 | 0.8333 | 0.8333 | 1.0000 | D | 0 |
| oligos_6nt_mkv3_m1 | dyads_m3 | oligos_6nt_mkv3_m1 | dyads_m3 | 0.884 | 0.736 | 10 | 12 | 10 | 12 | 0.8333 | 1.0000 | 0.8333 | D | 0 |
| dyads_m2 | positions_6nt_m1 | dyads_m2 | positions_6nt_m1 | 0.785 | 0.725 | 13 | 12 | 12 | 13 | 0.9231 | 0.9231 | 1.0000 | D | 0 |
| positions_6nt_m1 | dyads_m2 | positions_6nt_m1 | dyads_m2 | 0.785 | 0.725 | 12 | 13 | 12 | 13 | 0.9231 | 1.0000 | 0.9231 | D | 0 |
| positions_6nt_m4 | dyads_m2 | positions_6nt_m4 | dyads_m2 | 0.757 | 0.699 | 12 | 13 | 12 | 13 | 0.9231 | 1.0000 | 0.9231 | D | 0 |
| dyads_m2 | positions_6nt_m4 | dyads_m2 | positions_6nt_m4 | 0.757 | 0.699 | 13 | 12 | 12 | 13 | 0.9231 | 0.9231 | 1.0000 | D | 0 |
| positions_6nt_m2 | dyads_m2 | positions_6nt_m2 | dyads_m2 | 0.704 | 0.650 | 12 | 13 | 12 | 13 | 0.9231 | 1.0000 | 0.9231 | D | -1 |
| dyads_m2 | positions_6nt_m2 | dyads_m2 | positions_6nt_m2 | 0.704 | 0.650 | 13 | 12 | 12 | 13 | 0.9231 | 0.9231 | 1.0000 | D | 1 |
| oligos_7nt_mkv4_m1 | oligos_7nt_mkv4_m2 | oligos_7nt_mkv4_m1 | oligos_7nt_mkv4_m2 | 0.717 | 0.598 | 11 | 11 | 10 | 12 | 0.8333 | 0.9091 | 0.9091 | R | -1 |
| oligos_7nt_mkv4_m2 | oligos_7nt_mkv4_m1 | oligos_7nt_mkv4_m2 | oligos_7nt_mkv4_m1 | 0.717 | 0.598 | 11 | 11 | 10 | 12 | 0.8333 | 0.9091 | 0.9091 | R | -1 |
| oligos_6nt_mkv3_m1 | positions_6nt_m2 | oligos_6nt_mkv3_m1 | positions_6nt_m2 | 0.790 | 0.547 | 10 | 12 | 9 | 13 | 0.6923 | 0.9000 | 0.7500 | D | 1 |
| positions_6nt_m2 | oligos_6nt_mkv3_m1 | positions_6nt_m2 | oligos_6nt_mkv3_m1 | 0.790 | 0.547 | 12 | 10 | 9 | 13 | 0.6923 | 0.7500 | 0.9000 | D | -1 |
| positions_6nt_m1 | oligos_6nt_mkv3_m1 | positions_6nt_m1 | oligos_6nt_mkv3_m1 | 0.741 | 0.513 | 12 | 10 | 9 | 13 | 0.6923 | 0.7500 | 0.9000 | D | -1 |
| oligos_6nt_mkv3_m1 | positions_6nt_m1 | oligos_6nt_mkv3_m1 | positions_6nt_m1 | 0.741 | 0.513 | 10 | 12 | 9 | 13 | 0.6923 | 0.9000 | 0.7500 | D | 1 |
Host name rsat Job started 2025-11-07.120020 Job done 2025-11-07.120030 Seconds 0.66 user 0.66 system 0.37 cuser 8.01 ; csystem 1.23