; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	0	1	0	0	1	0	0	0	5	3	1
c	3	1	5	0	0	0	0	0	0	0	0
g	1	1	0	0	4	0	4	5	0	0	1
t	1	2	0	5	0	5	1	0	0	2	3
//
; Sites	5
>site_0
GTCTGTTGATT
>site_1
CACTATGGATA
>site_2
TGCTGTGGAAG
>site_3
CTCTGTGGAAT
>site_4
CCCTGTGGAAT
a	1	2	8	0	0	0	1	0	0	3	2
c	2	2	0	0	1	0	7	2	7	1	1
g	3	1	0	0	7	7	0	0	1	1	0
t	2	3	0	8	0	1	0	6	0	3	5
//
; Sites	8
>site_0
GCATGGATCTT
>site_1
TAATGGCTCGA
>site_2
GTATGTCTCAT
>site_3
TTATCGCTCTT
>site_4
GCATGGCCCAT
>site_5
AGATGGCCGAT
>site_6
CTATGGCTCTC
>site_7
CAATGGCTCCA
a	0	1	0	3	3	0	0	0	0	3	2
c	0	1	0	0	0	0	0	0	3	0	0
g	3	0	3	0	0	3	0	3	0	0	0
t	0	1	0	0	0	0	3	0	0	0	1
//
; Sites	3
>site_0
GTGAAGTGCAT
>site_1
GAGAAGTGCAA
>site_2
GCGAAGTGCAA
a	1	1	4	4	4	4	0	4	0	0	2
c	1	0	0	0	0	0	0	0	0	2	0
g	0	2	0	0	0	0	4	0	4	2	2
t	2	1	0	0	0	0	0	0	0	0	0
//
; Sites	4
>site_0
CAAAAAGAGCA
>site_1
AGAAAAGAGGG
>site_2
TGAAAAGAGCG
>site_3
TTAAAAGAGGA
; Host name	rsat
; Job started	2025-11-07.144606
; Job done	2025-11-07.144606
; Seconds	0.14
;	user	0.15
;	system	0
;	cuser	0
;	csystem	0
