# RSAT - compare-matrices result

### Analysis: result (07/11/2025 14:46)

`Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/discovered_motifs/oligos_8nt_mkv1_m4/peak-motifs_oligos_8nt_mkv1_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_plants_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/discovered_motifs/oligos_8nt_mkv1_m4/peak-motifs_oligos_8nt_mkv1_m4_vs_db_JASPAR2024_CORE_plants_non-redundant`

## Input files

Type | File
--- | ---
file1 | peak-motifs_oligos_8nt_mkv1_m4.tf
file2 | ../../../../../../../../../motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_plants_non-redundant_pfms_transfac.txt

## Output files

Type | File
--- | ---
match_table_txt | peak-motifs_oligos_8nt_mkv1_m4_vs_db_JASPAR2024_CORE_plants_non-redundant.tab
match_table_html | peak-motifs_oligos_8nt_mkv1_m4_vs_db_JASPAR2024_CORE_plants_non-redundant.html
alignments_1ton | peak-motifs_oligos_8nt_mkv1_m4_vs_db_JASPAR2024_CORE_plants_non-redundant_alignments_1ton.tab
alignments_1ton_html | peak-motifs_oligos_8nt_mkv1_m4_vs_db_JASPAR2024_CORE_plants_non-redundant_alignments_1ton.html

## Directories

Type | Directory
--- | ---
output | .
aligned_logos | peak-motifs_oligos_8nt_mkv1_m4_vs_db_JASPAR2024_CORE_plants_non-redundant_aligned_logos