position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title AT -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 2 Sum of sequence lengths 1402 Min sequence length 0 Max sequence length 701 Average sequence length 701 Possible positions 1402 Sequences: # length ID 1 701 CYP82C4 2 701 F6'H1 Oligonucleotide statistics: Total occurrences 1402 Position interval parameters: Position interval 20 Number of windows 36 Total positions 1402 Degrees of freedom 35 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -18 [-359,-340] -349.5 2 22 2 -17 [-339,-320] -329.5 2 40 3 -16 [-319,-300] -309.5 2 40 4 -15 [-299,-280] -289.5 2 40 5 -14 [-279,-260] -269.5 2 40 6 -13 [-259,-240] -249.5 2 40 7 -12 [-239,-220] -229.5 2 40 8 -11 [-219,-200] -209.5 2 40 9 -10 [-199,-180] -189.5 2 40 10 -9 [-179,-160] -169.5 2 40 11 -8 [-159,-140] -149.5 2 40 12 -7 [-139,-120] -129.5 2 40 13 -6 [-119,-100] -109.5 2 40 14 -5 [-99,-80] -89.5 2 40 15 -4 [-79,-60] -69.5 2 40 16 -3 [-59,-40] -49.5 2 40 17 -2 [-39,-20] -29.5 2 40 18 -1 [-19,0] -9.5 2 40 19 0 [1,20] 10.5 2 40 20 1 [21,40] 30.5 2 40 21 2 [41,60] 50.5 2 40 22 3 [61,80] 70.5 2 40 23 4 [81,100] 90.5 2 40 24 5 [101,120] 110.5 2 40 25 6 [121,140] 130.5 2 40 26 7 [141,160] 150.5 2 40 27 8 [161,180] 170.5 2 40 28 9 [181,200] 190.5 2 40 29 10 [201,220] 210.5 2 40 30 11 [221,240] 230.5 2 40 31 12 [241,260] 250.5 2 40 32 13 [261,280] 270.5 2 40 33 14 [281,300] 290.5 2 40 34 15 [301,320] 310.5 2 40 35 16 [321,340] 330.5 2 40 36 17 [341,360] 350.5 2 20 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -349.5 occurrences in window 1 [-359,-340] 11 -329.5 occurrences in window 2 [-339,-320] 12 -309.5 occurrences in window 3 [-319,-300] 13 -289.5 occurrences in window 4 [-299,-280] 14 -269.5 occurrences in window 5 [-279,-260] 15 -249.5 occurrences in window 6 [-259,-240] 16 -229.5 occurrences in window 7 [-239,-220] 17 -209.5 occurrences in window 8 [-219,-200] 18 -189.5 occurrences in window 9 [-199,-180] 19 -169.5 occurrences in window 10 [-179,-160] 20 -149.5 occurrences in window 11 [-159,-140] 21 -129.5 occurrences in window 12 [-139,-120] 22 -109.5 occurrences in window 13 [-119,-100] 23 -89.5 occurrences in window 14 [-99,-80] 24 -69.5 occurrences in window 15 [-79,-60] 25 -49.5 occurrences in window 16 [-59,-40] 26 -29.5 occurrences in window 17 [-39,-20] 27 -9.5 occurrences in window 18 [-19,0] 28 10.5 occurrences in window 19 [1,20] 29 30.5 occurrences in window 20 [21,40] 30 50.5 occurrences in window 21 [41,60] 31 70.5 occurrences in window 22 [61,80] 32 90.5 occurrences in window 23 [81,100] 33 110.5 occurrences in window 24 [101,120] 34 130.5 occurrences in window 25 [121,140] 35 150.5 occurrences in window 26 [141,160] 36 170.5 occurrences in window 27 [161,180] 37 190.5 occurrences in window 28 [181,200] 38 210.5 occurrences in window 29 [201,220] 39 230.5 occurrences in window 30 [221,240] 40 250.5 occurrences in window 31 [241,260] 41 270.5 occurrences in window 32 [261,280] 42 290.5 occurrences in window 33 [281,300] 43 310.5 occurrences in window 34 [301,320] 44 330.5 occurrences in window 35 [321,340] 45 350.5 occurrences in window 36 [341,360]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t | t | 455 | 48.5 | 35 | 6.5e-02 | 0.26 | 0.59 | 1 | 10 | 12 | 7 | 13 | 9 | 18 | 11 | 11 | 8 | 13 | 9 | 17 | 14 | 12 | 10 | 14 | 22 | 19 | 13 | 15 | 15 | 15 | 13 | 15 | 13 | 7 | 6 | 10 | 17 | 21 | 20 | 8 | 12 | 5 | 16 | 5 |
| a | a | 488 | 45.0 | 35 | 1.2e-01 | 0.48 | 0.32 | 2 | 6 | 17 | 13 | 13 | 16 | 7 | 17 | 17 | 15 | 17 | 17 | 14 | 17 | 16 | 17 | 18 | 8 | 10 | 15 | 14 | 16 | 10 | 14 | 14 | 17 | 18 | 22 | 10 | 6 | 7 | 6 | 21 | 15 | 17 | 8 | 3 |
| g | g | 198 | 34.8 | 35 | 4.8e-01 | 1.9 | -0.28 | 3 | 2 | 6 | 8 | 6 | 9 | 6 | 6 | 6 | 11 | 4 | 4 | 4 | 3 | 5 | 5 | 4 | 6 | 3 | 5 | 6 | 3 | 10 | 8 | 5 | 6 | 8 | 3 | 10 | 7 | 2 | 5 | 2 | 3 | 9 | 2 | 6 |
| c | c | 261 | 25.8 | 35 | 8.7e-01 | 3.5 | -0.54 | 4 | 4 | 5 | 12 | 8 | 6 | 9 | 6 | 6 | 6 | 6 | 10 | 5 | 6 | 7 | 8 | 4 | 4 | 8 | 7 | 5 | 6 | 5 | 5 | 6 | 4 | 7 | 9 | 10 | 10 | 10 | 9 | 9 | 10 | 9 | 14 | 6 |
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