; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	5	4	11	0	0	6	5	5	2	2	3	7	2	7	3	6	4	5	4	4	3	6	4	4	9	0	12	3	1
c	2	3	0	2	0	1	1	0	3	1	0	1	5	0	4	0	2	2	0	4	1	1	1	0	1	0	0	1	1
g	3	3	1	8	12	3	2	2	2	1	3	2	1	1	0	1	3	2	2	0	4	0	2	5	1	12	0	4	5
t	2	2	0	2	0	2	4	5	5	8	6	2	4	4	5	5	3	3	6	4	4	5	5	3	1	0	0	4	5
//
; Sites	12
>site_0
CAACGTCACCAATATTAGACTTTTAGAGT
>site_1
TAAGGATATTGACAATGAACAAAAAGAGC
>site_2
GAGGGAAGTATCCATAGTGTTTTGAGAGT
>site_3
CAAGGATTGGAACAAACAAAGAAAAGAGG
>site_4
ACAGGAATGTGATACAATTCCACGTGATG
>site_5
ACAGGGAAATTGCACTTCGCTTTAAGAAG
>site_6
GGACGAGTTTTAGTCTTCTTAAAGCGAAG
>site_7
GGAGGCGACTTATGCAAATTAATGGGATT
>site_8
ACATGTTGTTATTATACTTAGCATAGACG
>site_9
ATATGGTTATTACTAAGATATTTTAGATA
>site_10
AGAGGAAACAGTATTTAAAAGAGGAGAAT
>site_11
TTAGGGATTTTGATTGTGTTGTGAAGATT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m1_rc.png
;
; Host name	rsat
; Job started	2025-11-07.144614
; Job done	2025-11-07.144615
; Seconds	0.13
;	user	0.14
;	system	0.01
;	cuser	0.25
;	csystem	0.04
