; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/oligos_8nt_mkv1/peak-motifs_oligos-2str-noov_8nt_mkv1_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/oligos_8nt_mkv1/peak-motifs_oligos-2str-noov_8nt_mkv1_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/oligos_8nt_mkv1/peak-motifs_oligos-2str-noov_8nt_mkv1_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/oligos_8nt_mkv1/peak-motifs_oligos-2str-noov_8nt_mkv1_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/oligos_8nt_mkv1/peak-motifs_oligos-2str-noov_8nt_mkv1_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	0	0	0	0	0	0	0	0	3	3	0	1
c	2	1	3	0	0	0	0	0	0	0	0	1
g	0	1	0	0	3	0	3	3	0	0	1	0
t	1	1	0	3	0	3	0	0	0	0	2	1
//
; Sites	3
>site_0
TGCTGTGGAAGA
>site_1
CTCTGTGGAATT
>site_2
CCCTGTGGAATC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/oligos_8nt_mkv1//peak-motifs_oligos-2str-noov_8nt_mkv1_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/oligos_8nt_mkv1//peak-motifs_oligos-2str-noov_8nt_mkv1_pssm_count_matrices_logo_m1_rc.png
;
a	0	1	0	3	3	0	0	0	0	3	2	2
c	0	1	0	0	0	0	0	0	3	0	0	0
g	3	0	3	0	0	3	0	3	0	0	0	0
t	0	1	0	0	0	0	3	0	0	0	1	1
//
; Sites	3
>site_0
GTGAAGTGCATA
>site_1
GAGAAGTGCAAA
>site_2
GCGAAGTGCAAT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/oligos_8nt_mkv1//peak-motifs_oligos-2str-noov_8nt_mkv1_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/oligos_8nt_mkv1//peak-motifs_oligos-2str-noov_8nt_mkv1_pssm_count_matrices_logo_m2_rc.png
;
a	2	1	0	2	0	0	3	0	1	0	1	0
c	0	1	3	1	3	0	0	0	0	0	1	0
g	1	1	0	0	0	0	0	0	2	3	0	0
t	0	0	0	0	0	3	0	3	0	0	1	3
//
; Sites	3
>site_0
GGCCCTATAGTT
>site_1
AACACTATGGAT
>site_2
ACCACTATGGCT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/oligos_8nt_mkv1//peak-motifs_oligos-2str-noov_8nt_mkv1_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/oligos_8nt_mkv1//peak-motifs_oligos-2str-noov_8nt_mkv1_pssm_count_matrices_logo_m3_rc.png
;
a	1	2	2	2	2	0	0	0	0	0	0	1	0
c	0	0	0	0	0	0	2	0	2	2	0	0	1
g	0	0	0	0	0	2	0	0	0	0	0	1	0
t	1	0	0	0	0	0	0	2	0	0	2	0	1
//
; Sites	2
>site_0
TAAAAGCTCCTGC
>site_1
AAAAAGCTCCTAT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/oligos_8nt_mkv1//peak-motifs_oligos-2str-noov_8nt_mkv1_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/oligos_8nt_mkv1//peak-motifs_oligos-2str-noov_8nt_mkv1_pssm_count_matrices_logo_m4_rc.png
;
a	2	1	0	4	4	0	3	0	0	4	3	1
c	1	3	4	0	0	0	0	0	0	0	0	1
g	1	0	0	0	0	0	0	0	0	0	1	0
t	0	0	0	0	0	4	1	4	4	0	0	2
//
; Sites	4
>site_0
ACCAATATTAGA
>site_1
AACAATATTAAC
>site_2
CCCAATTTTAAT
>site_3
GCCAATATTAAT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/oligos_8nt_mkv1//peak-motifs_oligos-2str-noov_8nt_mkv1_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/11/07/peak-motifs.2025-11-07.144553_2025-11-07.144553_0jTHd8/results/oligos_8nt_mkv1//peak-motifs_oligos-2str-noov_8nt_mkv1_pssm_count_matrices_logo_m5_rc.png
;
; Host name	rsat
; Job started	2025-11-07.144609
; Job done	2025-11-07.144611
; Seconds	0.12
;	user	0.12
;	system	0.05
;	cuser	1.14
;	csystem	0.17
